genome.fa.s2855.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002855.1 Hibiscus syriacus cultivar Beakdansim tig00005878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59768

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52--95	21	2.1	21	86	0	61	43	11	29	15	1.82
129--194	33	2.0	33	87	0	96	30	0	46	22	1.52
1958--2006	19	2.6	19	93	0	80	30	2	10	57	1.43
2125--3298	400	2.9	398	96	0	2134	37	14	16	31	1.89
2125--3298	199	5.9	200	96	0	2140	37	14	16	31	1.89
3771--3843	23	3.2	23	88	0	101	34	4	21	39	1.73
4204--4276	23	3.2	23	92	0	119	34	5	21	38	1.77
3582--4442	424	2.0	429	94	3	1509	40	7	12	39	1.72
5279--5343	18	3.5	18	70	15	60	52	10	1	35	1.46
6552--6600	21	2.4	21	86	3	64	26	30	16	26	1.97
16734--16815	42	2.0	42	87	4	112	28	18	19	34	1.95
16866--16965	42	2.4	42	84	1	121	24	26	21	29	1.99
16994--17165	53	3.2	53	92	1	283	31	23	25	19	1.98
21227--21296	35	2.0	35	100	0	140	28	22	28	20	1.98
21945--21998	3	17.0	3	85	11	56	35	0	0	64	0.94
23326--23366	18	2.3	18	86	0	55	36	0	0	63	0.95
23341--23685	135	2.7	125	81	9	376	38	5	7	48	1.54
24048--24155	53	2.0	53	96	0	198	21	26	32	19	1.97
24903--24956	28	1.9	28	84	0	72	24	7	3	64	1.35
26255--26298	20	2.2	20	87	0	61	18	9	6	65	1.42
32113--32208	39	2.4	40	84	1	113	33	14	27	25	1.94
32183--32437	75	3.4	75	88	1	377	30	14	25	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34149--34189	18	2.3	18	86	0	55	36	0	0	63	0.95
34164--34408	125	2.0	125	87	2	359	36	5	7	50	1.55
40735--40798	27	2.4	27	94	0	110	25	35	15	23	1.94
46073--46103	2	15.5	2	100	0	62	48	0	0	51	1.00
47272--47303	2	16.0	2	100	0	64	50	0	0	50	1.00
55798--55839	13	2.8	16	79	20	63	76	0	23	0	0.79
55798--55846	15	3.3	15	82	5	64	75	0	22	2	0.90
55784--55854	15	4.7	15	76	13	56	76	0	21	2	0.92
55807--55838	7	4.7	7	92	7	57	75	0	25	0	0.81
57111--57218	32	3.2	32	70	12	99	35	22	19	23	1.96
57115--57449	37	9.1	37	76	7	322	35	22	17	23	1.95
57118--57391	148	1.8	148	85	4	370	33	23	17	24	1.96
57115--57449	148	2.3	148	80	6	358	35	22	17	23	1.95
57826--58564	54	13.9	54	86	2	951	31	20	25	23	1.98
57826--58567	267	2.8	265	84	4	967	31	19	25	23	1.98
57826--58518	321	2.2	321	84	2	937	31	20	24	23	1.98
58847--58888	2	22.0	2	90	9	70	47	0	0	52	1.00
58845--58885	13	3.2	13	100	0	82	46	0	0	53	1.00

Tables:   1

The End!