genome.fa.s2856.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002856.1 Hibiscus syriacus cultivar Beakdansim tig00005882_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  208120

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3199--3276	38	2.1	38	97	0	147	19	19	16	44	1.86
8381--8422	21	2.0	21	100	0	84	47	28	9	14	1.75
11213--11529	135	2.3	136	81	7	338	43	18	12	25	1.85
11302--11796	125	3.8	125	79	8	430	41	17	14	26	1.88
13820--13860	16	2.6	16	88	3	57	39	9	19	31	1.84
13912--13978	27	2.5	27	95	0	116	26	19	17	35	1.94
14238--14263	2	13.0	2	100	0	52	0	50	0	50	1.00
16371--16423	6	8.3	6	82	12	52	24	0	49	26	1.51
16374--16434	27	2.2	28	80	8	81	27	0	45	26	1.54
16412--16471	27	2.4	25	86	8	77	28	0	41	30	1.56
18319--18376	24	2.4	24	97	0	107	25	17	37	18	1.93
21663--21710	25	1.9	25	83	8	62	39	14	10	35	1.80
41195--41229	18	1.9	18	100	0	70	11	28	34	25	1.91
42564--42633	34	2.1	32	86	5	95	22	30	15	31	1.95
42848--42887	21	1.9	22	90	10	66	12	10	40	37	1.77
42915--42957	21	2.0	21	95	0	77	27	27	20	23	1.99
42993--43036	21	2.1	21	86	0	61	15	27	40	15	1.88
43070--43148	21	4.1	20	75	21	87	13	27	35	22	1.93
43071--43142	36	2.0	36	91	0	117	15	27	33	23	1.95
43238--43297	29	2.0	31	90	6	97	45	15	6	33	1.72
45899--45968	34	2.1	32	86	5	95	22	30	15	31	1.95
46183--46222	21	1.9	22	90	10	66	12	10	40	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46250--46293	22	2.0	22	91	4	72	27	29	20	22	1.99
46406--46470	21	3.1	21	90	0	103	13	27	36	21	1.92
46560--46618	29	2.0	31	93	6	104	44	16	5	33	1.70
48698--48737	14	3.1	13	82	10	55	60	0	0	40	0.97
48711--48754	16	2.6	17	85	7	54	47	0	0	52	1.00
49715--49747	16	2.0	16	94	5	57	0	12	3	84	0.72
50159--50190	11	2.8	11	95	4	55	43	0	0	56	0.99
50186--50235	3	16.7	3	100	0	100	66	0	0	34	0.92
50553--51202	339	1.9	340	87	5	958	30	19	12	38	1.88
50553--51220	114	5.9	113	85	5	931	30	19	12	38	1.88
51928--52319	83	4.7	83	89	2	550	35	22	13	28	1.92
51928--52319	169	2.3	166	88	2	550	35	22	13	28	1.92
53463--53552	8	12.1	8	78	16	70	3	13	0	83	0.77
53481--53550	1	70.0	1	73	0	59	4	8	0	87	0.67
53463--53550	13	6.5	14	81	13	80	3	12	0	84	0.75
53473--53550	38	2.1	38	87	0	111	3	10	0	85	0.71
64105--64182	27	2.8	28	72	18	72	67	2	3	25	1.20
65863--65895	16	2.0	16	94	5	57	0	12	3	84	0.72
66317--66341	11	2.3	11	100	0	50	48	0	0	52	1.00
66337--66377	3	13.7	3	100	0	82	65	0	0	34	0.93
73624--74435	261	3.0	264	83	6	910	39	16	18	25	1.92
80868--80923	23	2.6	22	86	10	80	41	3	10	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84171--84766	123	4.8	126	94	2	1048	21	26	19	32	1.97
85058--85152	28	3.0	32	76	17	108	38	3	4	53	1.36
85665--85757	21	4.5	21	90	6	120	20	26	34	18	1.96
85761--85807	21	2.3	21	85	3	60	21	12	40	25	1.89
87523--87605	31	2.6	31	79	9	87	57	2	0	39	1.12
87523--87596	34	2.3	33	81	11	91	59	1	0	39	1.06
87521--87592	14	4.7	15	70	20	51	58	1	0	40	1.07
87558--87626	33	2.1	34	83	8	88	62	5	0	31	1.19
99548--99572	2	12.5	2	100	0	50	48	0	0	52	1.00
104675--104707	17	1.9	17	88	11	50	66	3	0	30	1.06
109789--109827	20	2.0	20	85	10	53	61	2	5	30	1.31
110302--110334	3	11.0	3	100	0	66	66	0	0	33	0.92
113257--113307	24	2.1	24	88	0	75	45	9	3	41	1.56
118523--118567	21	2.2	21	84	4	56	44	26	8	20	1.80
118495--118614	20	6.0	21	76	10	92	38	22	12	26	1.90
118547--118605	19	3.1	19	92	2	91	33	22	11	32	1.90
118782--118818	16	2.4	16	86	8	51	29	5	0	64	1.15
119409--119442	12	2.8	12	90	0	50	55	29	0	14	1.40
119463--119519	24	2.4	24	94	5	98	36	35	3	24	1.73
119578--119633	24	2.3	24	87	0	76	26	19	17	35	1.94
121919--121954	18	2.0	18	94	0	63	55	22	2	19	1.56
122188--122355	63	2.7	63	88	1	248	32	23	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122426--122475	25	2.0	25	96	0	91	26	8	22	44	1.80
122862--122898	18	2.1	18	89	0	56	32	5	10	51	1.60
124016--124071	20	2.8	20	75	0	67	37	17	21	23	1.94
124109--124190	20	4.1	20	82	0	92	23	19	19	37	1.94
124249--124406	64	2.5	64	93	1	262	51	15	2	30	1.57
125744--125903	21	7.6	21	82	0	194	22	20	35	21	1.96
125744--125906	42	3.9	42	89	4	222	23	20	34	20	1.96
127960--128025	20	3.3	20	91	0	105	48	21	18	12	1.80
127955--128042	40	2.2	39	86	4	122	46	20	18	14	1.84
128049--128087	20	1.9	21	89	5	62	15	10	20	53	1.70
128106--128140	17	2.1	17	100	0	70	34	17	11	37	1.85
128445--128501	22	2.6	22	80	0	69	21	19	38	21	1.93
128651--128703	20	2.7	19	80	8	61	24	11	20	43	1.85
128668--128707	21	2.0	20	90	5	62	30	7	20	42	1.79
145776--145821	22	2.1	22	91	0	74	47	0	0	52	1.00
153758--153796	3	13.0	3	100	0	78	66	0	0	33	0.92
166300--166346	23	2.0	23	95	0	85	38	12	14	34	1.85
168810--168891	33	2.5	33	85	0	101	24	25	13	36	1.92
171437--171501	2	32.5	2	96	0	121	47	0	1	50	1.10
171574--171853	133	2.1	134	89	3	418	25	11	5	57	1.54
171609--171853	133	1.8	134	92	0	420	25	11	5	57	1.54
183401--184071	105	6.4	105	94	0	1126	34	25	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185740--186026	142	2.1	139	88	5	429	26	10	4	57	1.53
186763--186808	13	3.5	13	80	8	58	30	0	4	65	1.12
186771--186809	14	2.7	14	88	4	51	25	0	5	69	1.09
187093--187146	14	3.6	16	70	29	55	27	0	7	64	1.20
195763--195792	15	1.9	16	93	6	53	3	23	0	73	0.98
196994--197050	27	2.1	27	87	6	80	45	8	5	40	1.58
197143--197173	12	2.6	12	100	0	62	38	0	0	61	0.96
198290--198362	21	3.5	21	70	20	71	34	23	20	21	1.97
198270--198356	42	2.1	42	93	0	147	36	20	18	24	1.95
200282--200317	10	3.6	10	92	0	63	8	19	22	50	1.74
200581--200628	24	2.0	24	87	0	69	62	16	6	14	1.51
200607--200642	14	2.6	14	90	0	54	61	13	11	13	1.58

Tables:   1

The End!