genome.fa.s2857.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002857.1 Hibiscus syriacus cultivar Beakdansim tig00005883_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81097

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2775--2819	17	2.6	17	89	3	63	22	53	13	11	1.71
2813--2847	18	1.9	18	94	0	61	17	42	22	17	1.88
2779--2856	31	2.5	31	85	2	104	19	46	17	16	1.85
2796--2856	13	4.3	13	75	18	59	18	44	19	18	1.87
2848--2883	7	5.1	7	87	12	56	13	33	27	25	1.94
2836--2883	21	2.3	20	92	3	78	14	35	27	22	1.93
3974--4008	18	1.9	18	88	0	52	54	0	17	28	1.43
21528--21611	44	1.9	44	92	4	143	36	16	19	27	1.93
22518--22551	2	17.0	2	100	0	68	50	0	0	50	1.00
23121--23165	2	22.5	2	100	0	90	48	0	0	51	1.00
25930--26058	39	3.3	39	93	0	222	37	29	6	27	1.81
28796--28838	13	3.3	12	81	12	50	0	27	0	72	0.85
29035--29069	12	2.9	12	91	0	61	2	25	5	65	1.28
29415--29660	126	2.0	126	85	1	332	22	26	13	38	1.90
29426--29689	126	2.1	126	82	4	309	21	26	12	39	1.90
37596--37647	3	17.3	3	87	0	77	28	1	1	67	1.12
40834--40902	31	2.2	31	94	5	122	17	11	8	62	1.53
41624--41685	32	2.0	32	96	3	117	14	12	9	62	1.53
44804--44841	11	3.4	11	89	7	58	71	10	13	5	1.30
44813--44848	18	1.9	19	88	5	56	72	8	13	5	1.27
46013--46046	4	9.0	4	87	12	54	50	26	0	23	1.50
46009--46054	22	2.1	21	92	4	74	50	23	2	23	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46520--46758	105	2.3	102	83	7	286	30	20	12	36	1.89
46719--46824	34	3.0	35	77	10	108	32	20	11	35	1.88
47077--47131	27	2.1	26	82	3	65	23	12	14	49	1.78
47077--47202	29	4.5	29	82	4	152	28	10	14	46	1.77
47074--47202	56	2.3	55	81	6	152	29	10	14	45	1.78
47111--47216	29	3.7	28	87	3	124	28	8	14	49	1.72
47189--47326	61	2.3	61	98	0	267	29	13	15	42	1.84
47368--47431	30	2.1	30	91	5	103	35	9	15	39	1.80
47385--47630	64	3.8	64	72	12	205	30	14	12	42	1.82
47804--47899	35	2.7	35	95	3	167	34	22	9	33	1.87
47874--48052	66	2.8	63	78	6	180	25	21	15	37	1.93
48171--48224	28	1.9	28	84	0	72	22	18	16	42	1.89
48250--48576	46	7.5	46	72	14	219	25	31	19	23	1.98
48253--48612	40	8.4	40	72	16	170	25	32	19	23	1.97
48237--48626	129	3.0	129	91	0	602	25	32	18	22	1.97
48816--48867	3	17.3	3	91	0	86	30	1	1	65	1.14
55902--55930	13	2.2	13	100	0	58	31	0	20	48	1.50
56475--56539	20	3.2	20	82	4	85	40	3	0	56	1.15
56482--56543	20	3.0	20	83	4	88	37	3	0	59	1.13
61035--61160	59	2.1	59	85	1	162	29	13	16	40	1.87
61216--61832	316	1.9	318	84	2	812	36	15	14	32	1.89
67505--67600	45	2.1	46	92	3	158	52	6	3	38	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67513--67588	21	3.5	21	67	18	57	52	7	1	38	1.39
67868--67898	15	2.1	15	100	0	62	38	29	0	32	1.57
74244--74328	44	1.9	44	83	11	111	48	5	11	34	1.64
74470--74506	18	2.1	18	89	0	56	51	0	0	48	1.00
77425--77455	14	2.3	14	94	5	55	87	0	0	12	0.55
79397--79429	2	16.5	2	100	0	66	48	0	0	51	1.00

Tables:   1

The End!