Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002858.1 Hibiscus syriacus cultivar Beakdansim tig00005893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125628

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3718--3771
24
2.2
24
86
0
72
12
25
29
31
1.93
4910--4963
28
2.0
26
89
7
81
62
3
22
11
1.43
11543--11594
19
2.7
19
100
0
104
30
30
17
21
1.96
11561--11704
65
2.2
64
82
6
184
28
24
20
27
1.99
13643--13682
21
1.9
21
85
10
55
52
0
10
37
1.35
17857--17886
12
2.5
12
94
0
51
46
16
3
33
1.64
19577--19638
2
31.0
2
100
0
124
50
0
0
50
1.00
20262--20420
64
2.5
63
85
11
207
30
23
18
27
1.98
23288--23348
19
3.2
19
73
13
61
26
1
3
68
1.14
24945--25000
22
2.5
22
100
0
112
26
32
28
12
1.93
28968--29007
21
1.9
21
90
10
64
65
17
7
10
1.46
30201--30228
2
14.0
2
100
0
56
50
0
0
50
1.00
30382--30424
17
2.5
17
85
7
61
65
4
4
25
1.32
32377--32417
20
2.0
20
90
0
64
29
14
31
24
1.95
44705--44798
30
3.1
30
81
6
116
36
24
15
23
1.94
47050--47079
15
1.9
16
93
6
53
66
6
6
20
1.38
53098--53144
10
4.7
10
97
0
76
0
23
0
76
0.78
59581--59681
53
1.9
52
82
9
125
0
21
12
64
1.33
59965--60003
9
3.8
10
84
15
53
41
0
2
56
1.13
59999--60096
3
32.7
3
93
0
169
63
0
2
34
1.06
60443--60982
113
4.8
113
95
0
895
27
19
14
38
1.90
61788--62119
83
4.0
83
97
0
610
38
21
12
27
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73936--73998
24
2.6
23
80
14
74
61
0
1
36
1.05
75875--75911
16
2.4
16
95
4
67
16
18
56
8
1.64
75997--76035
9
3.8
10
84
15
53
41
0
2
56
1.13
76031--76110
3
26.7
3
89
0
124
61
0
2
36
1.10
76545--76778
43
5.5
42
79
8
204
26
15
23
34
1.94
76545--76778
86
2.7
85
78
3
236
26
15
23
34
1.94
76548--76793
129
1.9
129
79
3
280
27
16
23
32
1.96
77179--77249
21
3.4
20
80
7
70
2
30
22
43
1.68
77192--77281
42
2.1
42
87
4
128
0
32
22
45
1.53
77192--77263
21
3.4
21
92
0
117
0
30
23
45
1.53
77192--77281
21
4.3
21
79
13
96
0
32
22
45
1.53
77257--77317
21
2.9
21
73
9
61
0
32
19
47
1.50
82128--82171
21
2.1
21
83
8
54
34
0
2
63
1.07
82170--82246
3
25.7
3
89
0
64
53
1
1
44
1.17
82560--83025
113
4.1
113
96
1
812
28
18
15
37
1.91
83807--84401
83
7.1
83
90
3
942
35
22
13
28
1.92
83807--84401
168
3.6
167
95
1
1032
35
22
13
28
1.92
83807--84404
251
2.4
249
89
3
948
35
21
13
28
1.92
98360--98403
21
2.1
21
83
8
54
34
0
2
63
1.07
98392--98463
9
7.9
10
86
7
68
58
0
1
40
1.07
98402--98454
3
17.7
3
96
0
97
64
0
1
33
1.05
99135--99160
13
2.0
13
100
0
52
46
15
7
30
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99828--100213
41
9.4
41
81
4
384
32
17
20
29
1.95
99834--100213
83
4.6
81
79
6
381
32
17
20
28
1.96
101607--101716
41
2.7
41
84
5
134
35
18
10
36
1.84
101731--101925
41
4.7
41
69
18
127
27
17
17
36
1.93
101733--101923
82
2.3
83
83
7
228
27
17
17
36
1.93
103753--103777
11
2.3
11
100
0
50
24
0
0
76
0.80
119153--119191
20
2.0
20
89
0
60
35
0
17
46
1.49
120842--120906
2
33.5
2
93
6
116
49
0
0
50
1.00
124500--124559
3
20.7
3
86
6
88
63
0
0
36
0.95
124500--124567
15
4.1
17
81
12
88
64
0
0
35
0.94
124602--124643
2
21.5
2
95
4
77
50
0
0
50
1.00
124807--124850
22
2.0
22
95
4
79
20
13
18
47
1.82

Tables:   1

The End!