Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002859.1 Hibiscus syriacus cultivar Beakdansim tig00005895_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75508

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4163--4210
19
2.5
19
93
0
78
18
20
27
33
1.96
4242--4319
36
2.2
35
86
2
102
34
15
25
24
1.95
4242--4311
18
3.9
18
88
0
104
32
15
27
24
1.95
6948--7029
23
3.6
23
70
17
73
26
20
26
25
1.99
12243--12347
45
2.3
46
86
4
151
32
18
19
30
1.95
12335--12374
18
2.3
18
86
4
55
32
17
25
25
1.97
16798--16905
41
2.6
41
85
0
126
29
19
18
32
1.96
29845--29898
10
5.4
10
75
16
58
29
25
11
33
1.91
29835--29913
20
4.0
20
96
0
140
31
24
10
34
1.88
29841--29918
10
7.8
10
68
16
54
30
23
10
35
1.88
37612--37666
23
2.4
23
78
0
56
54
10
23
10
1.67
37887--37931
24
1.9
23
82
13
56
53
2
4
40
1.33
38511--38565
14
3.9
14
95
2
92
63
0
9
27
1.24
38838--38879
16
2.6
16
85
7
59
40
0
0
59
0.97
38838--38879
19
2.2
19
91
0
66
40
0
0
59
0.97
47164--47356
87
2.2
88
80
4
212
35
15
24
25
1.94
47682--47724
3
13.3
3
81
13
50
39
0
0
60
0.97
47685--47723
10
3.9
10
93
0
69
41
0
0
58
0.98
50169--50212
3
14.7
3
95
0
79
36
0
0
63
0.95
50170--50227
15
3.9
15
86
8
57
36
0
1
62
1.06
51935--51961
4
6.8
4
100
0
54
22
0
0
77
0.76
56693--56755
19
3.3
18
73
10
54
22
15
3
58
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58279--58319
13
3.2
13
80
13
50
82
0
14
2
0.76
58282--58327
10
4.3
11
81
13
51
80
0
17
2
0.81
58280--58327
11
4.3
10
80
19
51
81
0
16
2
0.79
60029--61162
233
5.0
233
80
6
1273
32
16
17
33
1.92
60029--61162
445
2.5
446
82
5
1213
32
16
17
33
1.92
61480--61827
134
2.6
134
81
2
385
34
21
15
28
1.94
62686--62860
95
1.8
95
82
2
224
33
15
24
26
1.95
63310--63383
20
3.4
20
67
25
60
44
9
24
21
1.82
63296--63465
46
3.6
47
85
3
234
45
10
20
24
1.81
64280--64379
20
4.7
20
80
16
119
41
10
28
21
1.85
64242--64379
67
2.1
67
94
0
240
41
9
26
22
1.84
65163--65258
3
32.0
3
95
0
174
33
2
0
64
1.05
65257--65284
3
9.3
3
100
0
56
32
0
32
35
1.58
65357--65400
22
2.0
22
86
8
63
34
45
18
2
1.62

Tables:   1

The End!