genome.fa.s2860.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002860.1 Hibiscus syriacus cultivar Beakdansim tig00005898_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84440

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151--181	13	2.4	13	94	0	53	41	22	0	35	1.54
504--534	13	2.4	13	94	0	53	41	22	0	35	1.54
1951--2069	60	2.0	60	89	0	184	38	23	15	22	1.92
3640--3676	16	2.3	16	95	0	65	40	21	13	24	1.89
6275--6569	60	4.9	60	89	2	459	37	22	18	21	1.94
6673--6720	14	3.5	13	78	13	51	47	16	18	16	1.82
7879--8032	65	2.4	64	85	5	195	31	16	22	29	1.96
33399--33462	28	2.3	27	86	7	94	20	1	25	53	1.55
35476--35526	23	2.3	22	83	6	59	25	17	25	31	1.97
36442--36497	24	2.3	24	96	0	103	26	26	19	26	1.99
37459--37640	27	6.4	27	73	13	109	34	3	3	58	1.30
37692--37854	28	5.5	28	73	14	96	55	2	3	38	1.31
37790--37853	32	2.0	32	87	6	94	56	0	4	39	1.20
40968--41055	42	2.1	43	84	2	115	32	12	15	38	1.85
49172--49215	22	2.0	22	95	0	79	38	18	15	27	1.91
55468--55695	44	5.2	44	76	2	181	29	23	17	28	1.97
55715--55805	43	2.2	43	82	9	118	37	21	15	25	1.93
55788--55841	27	2.0	27	89	7	83	37	22	11	29	1.89
61182--61257	36	2.1	36	97	0	143	31	10	14	43	1.79
61679--61708	15	2.0	15	100	0	60	13	26	46	13	1.80
66115--66188	35	2.1	36	92	5	125	31	10	14	43	1.80
70355--70405	22	2.2	23	86	6	68	45	9	11	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74885--75410	155	3.4	157	83	4	644	47	7	17	28	1.74
74885--75410	156	3.4	156	84	3	665	47	7	17	28	1.74
77392--77472	27	3.0	27	94	1	144	59	18	4	17	1.55
81678--81783	39	2.7	39	79	16	121	35	19	1	42	1.63
82051--82086	17	2.2	17	90	5	56	44	16	11	27	1.82
84082--84178	47	2.1	47	88	0	140	47	7	6	39	1.56
84187--84332	52	3.0	47	79	9	193	47	9	4	38	1.55
84087--84332	102	2.4	101	92	2	406	48	8	4	38	1.55

Tables:   1

The End!