genome.fa.s2861.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002861.1 Hibiscus syriacus cultivar Beakdansim tig00005899_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62861

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2871--3178	154	2.0	156	91	5	509	33	26	15	23	1.95
3311--3376	20	3.2	20	76	2	69	43	1	1	53	1.19
3358--3415	23	2.5	24	77	11	66	43	1	0	55	1.10
6340--6392	21	2.5	21	84	0	70	20	26	18	33	1.96
6382--6455	20	3.7	20	74	3	85	37	20	20	21	1.94
6382--6473	41	2.3	40	84	1	121	35	21	20	21	1.96
6652--6717	22	3.0	22	84	0	87	24	37	16	21	1.93
7042--7115	33	2.2	34	85	7	98	12	17	24	45	1.82
7055--7136	20	4.5	19	76	16	84	10	15	23	50	1.76
9001--9154	20	7.3	20	73	15	105	42	19	19	18	1.90
9024--9104	33	2.4	33	83	2	90	45	20	19	13	1.84
9204--9270	20	3.3	20	91	0	80	20	17	22	38	1.93
9188--9337	34	4.3	34	69	11	104	17	19	20	42	1.89
9188--9380	107	1.8	107	87	0	287	16	18	20	44	1.87
9311--9377	20	3.3	20	91	0	107	14	16	22	46	1.84
9852--9893	21	2.2	19	87	12	59	21	35	19	23	1.96
9846--9929	42	2.0	42	83	4	107	21	40	16	21	1.91
11317--11352	14	2.6	14	90	0	54	30	0	22	47	1.52
11474--11549	33	2.3	34	83	2	100	47	18	19	14	1.83
11564--11659	33	2.9	34	84	3	113	14	22	19	42	1.88
11631--11719	20	4.4	20	87	2	126	17	21	24	35	1.95
11707--11733	14	1.9	14	100	0	54	7	22	29	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14158--14211	24	2.2	24	93	0	90	40	20	18	20	1.91
14158--14225	24	2.8	24	84	0	64	38	20	17	23	1.93
15065--15219	20	7.7	20	81	4	170	22	20	19	38	1.94
15065--15219	61	2.5	61	81	6	163	22	20	19	38	1.94
15216--15261	21	2.2	21	88	0	65	36	17	28	17	1.92
17817--17885	3	23.7	3	74	11	54	56	0	1	42	1.08
17817--17893	38	2.1	38	88	7	115	54	0	1	44	1.08
17828--17893	14	5.0	13	79	20	75	54	0	1	43	1.09
17826--17885	26	2.4	26	86	8	81	56	0	1	41	1.09
18058--18981	54	17.1	54	81	6	970	21	23	20	34	1.97
18058--18981	108	8.6	109	86	2	1139	21	23	20	34	1.97
18058--18981	162	5.7	162	85	2	1165	21	23	20	34	1.97
18982--19064	37	2.2	37	82	4	96	19	18	15	46	1.83
20250--20320	6	11.2	6	91	8	106	0	15	0	84	0.62
20237--20367	7	19.0	7	81	12	139	2	16	0	80	0.80
20236--20356	19	6.0	19	86	10	145	1	17	0	80	0.78
20252--20321	1	70.0	1	71	0	50	0	14	0	85	0.59
25611--25671	24	2.5	24	97	2	113	29	31	11	27	1.92
28895--28980	3	29.7	3	77	11	81	58	1	1	39	1.13
28897--28975	23	3.5	21	75	18	63	58	1	1	39	1.14
28895--28980	26	3.2	26	80	5	100	58	1	1	39	1.13
28896--28981	17	4.9	18	81	9	83	58	1	1	39	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34578--34618	21	2.0	21	95	0	73	26	7	7	58	1.51
35768--36101	113	3.0	113	87	2	474	38	14	19	28	1.91
35768--36222	114	4.0	113	82	7	483	38	13	18	29	1.89
36564--36644	9	9.0	9	78	5	74	40	1	1	56	1.15
36564--36644	3	27.0	3	72	5	56	40	1	1	56	1.15
36566--36643	32	2.5	32	82	10	90	41	1	1	56	1.15
36566--36642	33	2.4	32	85	6	95	41	1	1	55	1.16
37996--38073	29	2.7	29	78	13	79	28	3	2	65	1.23
41199--41252	24	2.2	24	86	0	72	12	25	29	31	1.93
42404--42457	28	2.0	26	89	7	81	62	3	22	11	1.43
49111--49162	19	2.7	19	100	0	104	30	30	17	21	1.96
49129--49272	65	2.2	64	82	6	184	28	24	20	27	1.99
51220--51259	21	1.9	21	85	10	55	52	0	10	37	1.35
55447--55476	12	2.5	12	94	0	51	46	16	3	33	1.64
57168--57233	2	33.0	2	100	0	132	50	0	0	50	1.00
57842--58000	64	2.5	63	85	11	207	30	23	18	27	1.98
62389--62444	22	2.5	22	100	0	112	26	32	28	12	1.93

Tables:   1

The End!