genome.fa.s2862.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002862.1 Hibiscus syriacus cultivar Beakdansim tig00005901_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45322

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7737--7782	23	2.0	24	86	4	67	15	6	0	78	0.95
7748--7783	17	2.1	18	89	5	56	16	5	0	77	0.94
7737--7783	11	4.1	11	83	8	58	14	6	0	78	0.93
7737--7783	6	8.0	6	81	13	53	14	6	0	78	0.93
11671--11704	13	2.6	13	90	0	50	32	5	14	47	1.69
12724--12765	18	2.4	18	88	4	59	21	7	0	71	1.09
12940--13053	57	1.9	60	83	13	148	30	4	1	63	1.24
20387--20996	270	2.3	268	88	3	888	33	21	18	26	1.96
21810--21852	18	2.4	18	96	0	77	23	4	0	72	1.04
21894--22023	7	17.1	7	66	23	50	19	5	1	73	1.10
21904--21939	17	2.1	17	89	0	54	13	2	2	80	0.93
21904--21951	17	2.9	16	81	12	53	14	6	2	77	1.06
21956--22023	28	2.2	32	80	17	83	20	1	1	76	0.94
21986--22023	16	2.4	16	91	4	60	23	0	0	76	0.79
21956--22023	16	4.5	15	70	25	54	20	1	1	76	0.94
21900--22066	22	7.7	21	66	18	67	19	5	1	72	1.15
22034--22091	15	4.1	14	79	18	50	31	3	0	65	1.09
22026--22140	59	1.9	61	82	8	146	30	4	1	63	1.24
28865--28966	42	2.5	41	81	9	120	27	16	17	38	1.91
28941--29066	42	3.1	40	80	7	139	30	15	16	37	1.90
28945--29089	42	3.5	42	77	8	138	31	12	17	38	1.87
29339--29382	20	2.2	20	91	0	70	25	18	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29500--29577	41	1.9	41	86	5	113	25	15	21	37	1.93
36051--36266	44	4.9	43	78	6	204	24	12	20	42	1.87
36051--36266	86	2.5	88	83	3	233	24	12	20	42	1.87
37936--37984	16	3.1	16	96	0	89	22	0	34	42	1.54
39787--39841	19	2.7	21	77	13	60	36	16	20	27	1.93
40266--40409	77	1.9	77	91	2	236	34	12	23	29	1.92
40435--40516	24	3.3	25	85	8	114	46	8	23	21	1.79

Tables:   1

The End!