Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002865.1 Hibiscus syriacus cultivar Beakdansim tig00005910_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47480

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2088--2129
10
4.2
10
87
9
50
42
21
0
35
1.53
2088--2129
20
2.1
20
86
8
59
42
21
0
35
1.53
4750--4917
86
2.0
86
87
0
246
29
17
23
29
1.97
14300--14360
30
2.1
29
84
3
77
45
8
1
44
1.43
15799--15860
32
1.9
32
87
6
90
33
17
12
35
1.88
21541--21617
21
3.7
20
71
10
64
44
0
1
54
1.08
21566--21602
15
2.6
14
87
8
56
45
0
0
54
1.00
21722--21773
25
2.1
25
85
7
70
38
1
0
59
1.08
21762--21795
16
2.1
16
88
0
50
50
0
0
50
1.00
21758--21846
42
2.2
41
87
4
126
46
0
1
52
1.07
21843--21917
14
5.3
13
70
12
51
45
1
2
50
1.24
23347--23484
60
2.3
60
81
3
161
36
7
23
31
1.84
23356--23501
60
2.4
60
80
2
141
37
7
22
32
1.82
25352--25465
60
1.9
59
83
1
147
27
26
21
25
1.99
26451--26683
59
3.9
59
93
1
360
31
22
11
34
1.90
27015--27185
53
3.2
52
87
4
245
32
19
16
31
1.94
33339--33548
59
3.6
59
92
1
341
31
23
9
36
1.86
33878--34068
53
3.6
53
86
2
249
30
18
18
32
1.95
36816--36850
17
2.1
17
88
0
52
71
0
2
25
1.00
36953--37027
3
25.0
3
89
5
80
33
37
1
28
1.66
38766--38809
17
2.6
17
85
3
54
70
0
0
29
0.88
40059--40097
4
9.8
4
83
10
53
74
0
0
25
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40049--40098
16
3.4
14
78
21
50
74
2
0
24
0.93
40029--40097
28
2.5
27
83
9
77
69
1
1
27
1.05
41347--41633
5
55.6
5
71
22
145
54
4
1
40
1.28
41356--41635
2
148.5
2
67
25
132
54
4
1
40
1.29
41347--41635
7
39.4
7
71
20
175
54
4
1
40
1.28
42406--42870
201
2.3
201
84
4
584
29
19
16
34
1.94
43262--43321
22
2.7
22
94
0
102
23
30
20
26
1.98

Tables:   1

The End!