Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002866.1 Hibiscus syriacus cultivar Beakdansim tig00005912_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 168452
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:23133 original size:20 final size:20
Alignment explanation
Indices: 23084--23122 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
23074 CGGAGGGAAC
23084 CGATTCCCTCTTGAGGGTAA
1 CGATTCCCTCTTGAGGGTAA
23104 CGATTCCCTCTTGAGGGTA
1 CGATTCCCTCTTGAGGGTA
23123 CATATTCCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.18, C:0.26, G:0.26, T:0.31
Consensus pattern (20 bp):
CGATTCCCTCTTGAGGGTAA
Found at i:23274 original size:21 final size:21
Alignment explanation
Indices: 23241--23280 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
23231 TGTTTGCAGA
*
23241 AAAATCATTCCCAAACGGCTCC
1 AAAATCA-TCCCCAACGGCTCC
23263 AAAA-CATCCCCAACGGCT
1 AAAATCATCCCCAACGGCT
23281 AGATATGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 2 0.12
22 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:24576 original size:3 final size:3
Alignment explanation
Indices: 24555--24592 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
24545 TAAAGAAAGG
* *
24555 GAA G-A GAA GAA AAA CAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
24593 TGAGGACGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.68, C:0.03, G:0.29, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:26523 original size:21 final size:21
Alignment explanation
Indices: 26497--26538 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
26487 GTCATAATAT
**
26497 TATGAAGGGGTATTGATTCCC
1 TATGAAGGGGTACCGATTCCC
26518 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
26539 CCCATTATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:26600 original size:21 final size:21
Alignment explanation
Indices: 26567--26606 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
26557 TTTTTGCAGA
*
26567 AAAATCATTCCCAAACGGCTCC
1 AAAATCA-TCCCCAACGGCTCC
26589 AAAA-CATCCCCAACGGCT
1 AAAATCATCCCCAACGGCT
26607 AGATATGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 2 0.12
22 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:31246 original size:6 final size:6
Alignment explanation
Indices: 31235--31261 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
31225 GATACGTATT
31235 ACCACG ACCACG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACC
31262 GAGCCAAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.52, G:0.15, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:34303 original size:170 final size:170
Alignment explanation
Indices: 34017--34322 Score: 515
Period size: 170 Copynumber: 1.8 Consensus size: 170
34007 TCATTCACTT
* *
34017 TGAAGTTGAGCTTTAAATTGGATATCTTTCGTAGTGAAGTTGAAATCCAATGTTATTTGTGAGCA
1 TGAAGTTGAGCTTTAAATTGGATATCCTTCGTAGTGAAGTTGAAATCCAATATTATTTGTGAGCA
* * *
34082 CGATATCCTTCGTCGTGAAGTTGAAATCGTGGATATTTCGAGTCTAATATCCTTCGCCGTGAAGT
66 CGATAACCTTCATCGTGAAGTTGAAATCGTGGATATTTCGAGTCCAATATCCTTCGCCGTGAAGT
34147 TGAAATTGGCTCTGAATGAAATTGGGAAGCCCCTTCGCTG
131 TGAAATTGGCTCTGAATGAAATTGGGAAGCCCCTTCGCTG
* *
34187 TGAAGTTGAGCTTTGAATTGGATATCCTTCGCT-GTGAAGTTGAAATCCAATATTGTTTGTGAGC
1 TGAAGTTGAGCTTTAAATTGGATATCCTTCG-TAGTGAAGTTGAAATCCAATATTATTTGTGAGC
* *
34251 ACGATAACCTTCATCGTGAAGTTGAAATCGTGGATGTTTCGAGTCCAATATCCTTCGCTGTGAAG
65 ACGATAACCTTCATCGTGAAGTTGAAATCGTGGATATTTCGAGTCCAATATCCTTCGCCGTGAAG
34316 TTGAAAT
130 TTGAAAT
34323 CGTGGATGTT
Statistics
Matches: 126, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
170 125 0.99
171 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (170 bp):
TGAAGTTGAGCTTTAAATTGGATATCCTTCGTAGTGAAGTTGAAATCCAATATTATTTGTGAGCA
CGATAACCTTCATCGTGAAGTTGAAATCGTGGATATTTCGAGTCCAATATCCTTCGCCGTGAAGT
TGAAATTGGCTCTGAATGAAATTGGGAAGCCCCTTCGCTG
Found at i:34318 original size:44 final size:44
Alignment explanation
Indices: 34265--34366 Score: 186
Period size: 44 Copynumber: 2.3 Consensus size: 44
34255 TAACCTTCAT
34265 CGTGAAGTTGAAATCGTGGATGTTTCGAGTCCAATATCCTTCGC
1 CGTGAAGTTGAAATCGTGGATGTTTCGAGTCCAATATCCTTCGC
* *
34309 TGTGAAGTTGAAATCGTGGATGTTTCGGGTCCAATATCCTTCGC
1 CGTGAAGTTGAAATCGTGGATGTTTCGAGTCCAATATCCTTCGC
34353 CGTGAAGTTGAAAT
1 CGTGAAGTTGAAAT
34367 TGGCTCTGAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (44 bp):
CGTGAAGTTGAAATCGTGGATGTTTCGAGTCCAATATCCTTCGC
Found at i:34459 original size:214 final size:214
Alignment explanation
Indices: 34084--34493 Score: 678
Period size: 214 Copynumber: 1.9 Consensus size: 214
34074 TGTGAGCACG
*
34084 ATATCCTTCGTCGTGAAGTTGAAATCGTGGATATTTCGAGTCTAATATCCTTCGCCGTGAAGTTG
1 ATATCCTTCGTCGTGAAGTTGAAATCGTGGATATTTCGAGTCCAATATCCTTCGCCGTGAAGTTG
* * * * *
34149 AAATTGGCTCTGAATGAAATTGGGAAGCCCCTTCGCTGTGAAGTTGAGCTTTGAATTGGATATCC
66 AAATTGGCTCTGAATGAAACTGGGAAGCCCCTTCACTCTGAAGTTGAGCATTGAATTGGATATCA
* *
34214 TTCGCTGTGAAGTTGAAATCCAATATTGTTTGTGAGCACGATAACCTTCATCGTGAAGTTGAAAT
131 TTCACTGTGAAGTTAAAATCCAATATTGTTTGTGAGCACGATAACCTTCATCGTGAAGTTGAAAT
34279 CGTGGATGTTTCGAGTCCA
196 CGTGGATGTTTCGAGTCCA
* *
34298 ATATCCTTCG-CTGTGAAGTTGAAATCGTGGATGTTTCGGGTCCAATATCCTTCGCCGTGAAGTT
1 ATATCCTTCGTC-GTGAAGTTGAAATCGTGGATATTTCGAGTCCAATATCCTTCGCCGTGAAGTT
*
34362 GAAATTGGCTCTGAATGAAACTGGGAAGCCCCTTCACTCTGAAGTTGTGCATTGAATTGGATATC
65 GAAATTGGCTCTGAATGAAACTGGGAAGCCCCTTCACTCTGAAGTTGAGCATTGAATTGGATATC
* * *
34427 ATTCACTGTGAAGTTAAAATCCAATGTTGTTTGTGAGCACGATATCCTTCGTCGTGAAGTTGAAA
130 ATTCACTGTGAAGTTAAAATCCAATATTGTTTGTGAGCACGATAACCTTCATCGTGAAGTTGAAA
34492 TC
195 TC
34494 ATGAATGTCC
Statistics
Matches: 181, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
213 1 0.01
214 180 0.99
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (214 bp):
ATATCCTTCGTCGTGAAGTTGAAATCGTGGATATTTCGAGTCCAATATCCTTCGCCGTGAAGTTG
AAATTGGCTCTGAATGAAACTGGGAAGCCCCTTCACTCTGAAGTTGAGCATTGAATTGGATATCA
TTCACTGTGAAGTTAAAATCCAATATTGTTTGTGAGCACGATAACCTTCATCGTGAAGTTGAAAT
CGTGGATGTTTCGAGTCCA
Found at i:35367 original size:18 final size:17
Alignment explanation
Indices: 35338--35384 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
35328 ACCCACCTTA
*
35338 TTTTTCTTTTTTTCTTC
1 TTTTTCTCTTTTTCTTC
* *
35355 TCTTTTTTCTTTTTGTTC
1 T-TTTTCTCTTTTTCTTC
35373 TTTTTCTCTTTT
1 TTTTTCTCTTTT
35385 CTCTATTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (17 bp):
TTTTTCTCTTTTTCTTC
Found at i:35467 original size:19 final size:18
Alignment explanation
Indices: 35424--35468 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
35414 ACCCGAAACA
*
35424 TTTTTTCTTTTTTTTTTG
1 TTTTTTCTTTTTTTTTTC
35442 TTCTTTTCTTTTTCTTTTTC
1 TT-TTTTCTTTTT-TTTTTC
35462 TTTTTTC
1 TTTTTTC
35469 GACTTAGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 2 0.08
19 15 0.62
20 7 0.29
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.84
Consensus pattern (18 bp):
TTTTTTCTTTTTTTTTTC
Found at i:42565 original size:14 final size:16
Alignment explanation
Indices: 42538--42572 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
42528 AATACGAATG
42538 TAAAAACATGGAAA-A
1 TAAAAACATGGAAATA
42553 TAAAAACAT-GAAATA
1 TAAAAACATGGAAATA
42568 TAAAA
1 TAAAA
42573 TGCAAAGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.69, C:0.06, G:0.09, T:0.17
Consensus pattern (16 bp):
TAAAAACATGGAAATA
Found at i:47207 original size:22 final size:23
Alignment explanation
Indices: 47181--47239 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 23
47171 TTTCTATGAA
47181 ATTAATAAATAATATAAATT-TT
1 ATTAATAAATAATATAAATTATT
* * *
47203 ATTAATAATTATTATATATTATT
1 ATTAATAAATAATATAAATTATT
*
47226 A-AAATAAATAATAT
1 ATTAATAAATAATAT
47240 CTTATATTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 27 0.90
23 3 0.10
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTAATAAATAATATAAATTATT
Found at i:47367 original size:24 final size:25
Alignment explanation
Indices: 47264--47368 Score: 69
Period size: 24 Copynumber: 4.4 Consensus size: 25
47254 AATTGATTAT
* * *
47264 TTATTGTAATATTAAAATA-TATAT
1 TTATTATAATATTAAAATATTTTAA
* *
47288 TTATTAGAAT-TAATAAATATTTTAA
1 TTATTATAATATTA-AAATATTTTAA
* * * *
47313 ATATTTTTATATT--AATATTTTGA
1 TTATTATAATATTAAAATATTTTAA
*
47336 TTA-AATAATATTAAAATATTTT-A
1 TTATTATAATATTAAAATATTTTAA
47359 TTATTATAAT
1 TTATTATAAT
47369 TCATAAATAA
Statistics
Matches: 59, Mismatches: 16, Indels: 12
0.68 0.18 0.14
Matches are distributed among these distances:
22 6 0.10
23 17 0.29
24 26 0.44
25 9 0.15
26 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (25 bp):
TTATTATAATATTAAAATATTTTAA
Found at i:47621 original size:75 final size:74
Alignment explanation
Indices: 47526--47678 Score: 281
Period size: 75 Copynumber: 2.1 Consensus size: 74
47516 ACCAAACACT
47526 GAAAAATGAGGAAAACATTTTCCGGAAAACGTTTTTCGTGAAACAAATGAACACAAAATGT-ATT
1 GAAAAATGAGGAAAACATTTTCCGGAAAACGTTTTTCGTGAAACAAATGAACACAAAATGTAATT
47590 TATTTTACG
66 TATTTTACG
47599 GAAAATATGAGGAAAAACATTTTCCGGAAAACGTTTTTCGTGAAACAAATGAACACAAAATGTAA
1 GAAAA-ATGAGG-AAAACATTTTCCGGAAAACGTTTTTCGTGAAACAAATGAACACAAAATGTAA
47664 TTTATTTTACG
64 TTTATTTTACG
47675 GAAA
1 GAAA
47679 CAAACAACGA
Statistics
Matches: 77, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
73 5 0.06
74 6 0.08
75 50 0.65
76 16 0.21
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (74 bp):
GAAAAATGAGGAAAACATTTTCCGGAAAACGTTTTTCGTGAAACAAATGAACACAAAATGTAATT
TATTTTACG
Found at i:50862 original size:31 final size:29
Alignment explanation
Indices: 50818--50876 Score: 91
Period size: 31 Copynumber: 2.0 Consensus size: 29
50808 GGTATGATTT
*
50818 TGTAAAAAATAAAACTTTGAGTACTAAAA
1 TGTAAAAAATAAAACTTTAAGTACTAAAA
50847 TGTACAAAAAGTAAAACTTTAAGTACTAAA
1 TGTA-AAAAA-TAAAACTTTAAGTACTAAA
50877 TACGTAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 4 0.15
30 5 0.19
31 18 0.67
ACGTcount: A:0.54, C:0.08, G:0.10, T:0.27
Consensus pattern (29 bp):
TGTAAAAAATAAAACTTTAAGTACTAAAA
Found at i:55208 original size:5 final size:5
Alignment explanation
Indices: 55185--55226 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
55175 TGATTAGAAG
* *
55185 ATTAA ATT-T ATTGA ATTAA ATTAA ATTAA ATTAA GATTAA AT
1 ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA -ATTAA AT
55227 GAATACAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
4 3 0.09
5 24 0.75
6 5 0.16
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (5 bp):
ATTAA
Found at i:58959 original size:64 final size:64
Alignment explanation
Indices: 58851--59019 Score: 169
Period size: 64 Copynumber: 2.6 Consensus size: 64
58841 AGTGTTATAT
* * * ** * * * *
58851 TGTCAGTGTCACATTCAGAAAATGCACAATAATGGCACTGTCACATTCAGATAATGCA-AAGTAA
1 TGTCAGTGTCACATTCAGATAATGCACAGTAGTGTTAGTGTCACAATCAAATAATGCACAA-CAA
* * *
58915 TGTCAGTGTCATATTCAGATAATGCACAGTAGTGTTAGTTTCACAATCAAATAATGCACAACAG
1 TGTCAGTGTCACATTCAGATAATGCACAGTAGTGTTAGTGTCACAATCAAATAATGCACAACAA
* *** *
58979 TGTCAGTTTTGGATTCAGATAATGCATAGTAGTGTTAGTGT
1 TGTCAGTGTCACATTCAGATAATGCACAGTAGTGTTAGTGT
59020 TGCATTGAGA
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
64 84 0.98
65 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (64 bp):
TGTCAGTGTCACATTCAGATAATGCACAGTAGTGTTAGTGTCACAATCAAATAATGCACAACAA
Found at i:58969 original size:32 final size:32
Alignment explanation
Indices: 58851--59013 Score: 146
Period size: 32 Copynumber: 5.1 Consensus size: 32
58841 AGTGTTATAT
* * * *
58851 TGTCAGTGTCACATTCAGAAAATGCACAATAA
1 TGTCAGTTTCACATTCAGATAATGCACAGTAG
* * * * *
58883 TGGCACTGTCACATTCAGATAATGCAAAGTAA
1 TGTCAGTTTCACATTCAGATAATGCACAGTAG
* *
58915 TGTCAGTGTCATATTCAGATAATGCACAGTAG
1 TGTCAGTTTCACATTCAGATAATGCACAGTAG
* * * **
58947 TGTTAGTTTCACAATCAAATAATGCACAACAG
1 TGTCAGTTTCACATTCAGATAATGCACAGTAG
*** *
58979 TGTCAGTTTTGGATTCAGATAATGCATAGTAG
1 TGTCAGTTTCACATTCAGATAATGCACAGTAG
59011 TGT
1 TGT
59014 TAGTGTTGCA
Statistics
Matches: 105, Mismatches: 26, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 105 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (32 bp):
TGTCAGTTTCACATTCAGATAATGCACAGTAG
Found at i:59031 original size:32 final size:32
Alignment explanation
Indices: 58851--59033 Score: 143
Period size: 32 Copynumber: 5.7 Consensus size: 32
58841 AGTGTTATAT
* * * *
58851 TGTCAGTGTCACATTCAGAAAATGCACAATAA
1 TGTCAGTGTTACATTCAGATAATGCACAGTAG
* * * * *
58883 TGGCACTGTCACATTCAGATAATGCAAAGTAA
1 TGTCAGTGTTACATTCAGATAATGCACAGTAG
* *
58915 TGTCAGTGTCATATTCAGATAATGCACAGTAG
1 TGTCAGTGTTACATTCAGATAATGCACAGTAG
* * * **
58947 TGTTAGT-TTCACAATCAAATAATGCACAACAG
1 TGTCAGTGTT-ACATTCAGATAATGCACAGTAG
* ** *
58979 TGTCAGTTTTGGATTCAGATAATGCATAGTAG
1 TGTCAGTGTTACATTCAGATAATGCACAGTAG
* * *
59011 TGTTAGTGTTGCATTGAGATAAT
1 TGTCAGTGTTACATTCAGATAAT
59034 ATACACAAGT
Statistics
Matches: 120, Mismatches: 29, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
31 1 0.01
32 117 0.98
33 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (32 bp):
TGTCAGTGTTACATTCAGATAATGCACAGTAG
Found at i:62448 original size:24 final size:24
Alignment explanation
Indices: 62415--62533 Score: 159
Period size: 24 Copynumber: 5.0 Consensus size: 24
62405 AAACATAATT
* * *
62415 CATGTAAAGTATCATATCAAAATC
1 CATGTCAAGTATCAGATCAGAATC
*
62439 CAGGTCAAGTATCAGATCAGAATC
1 CATGTCAAGTATCAGATCAGAATC
* *
62463 CAAGTCAAGTATCAGATTAGAATC
1 CATGTCAAGTATCAGATCAGAATC
*
62487 CATGTC-AGATATCATATCAGAATC
1 CATGTCAAG-TATCAGATCAGAATC
62511 CATGTCAAGTATCAGATCAGAAT
1 CATGTCAAGTATCAGATCAGAAT
62534 TCAAATTGAA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
23 2 0.02
24 79 0.95
25 2 0.02
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.26
Consensus pattern (24 bp):
CATGTCAAGTATCAGATCAGAATC
Found at i:67984 original size:29 final size:29
Alignment explanation
Indices: 67924--68134 Score: 178
Period size: 29 Copynumber: 7.2 Consensus size: 29
67914 GAAAATTACA
* * * *
67924 AAAATATCACCTTTATTAAAAATAATTACC
1 AAAATGTCACCGTT-TTACAAATAATTCCC
*
67954 AAAATTTCACCGTTTTACAAATAATTCCC
1 AAAATGTCACCGTTTTACAAATAATTCCC
* * *
67983 AAAATGTCATCGTTTTAAAAATAATTACC
1 AAAATGTCACCGTTTTACAAATAATTCCC
* ** * *
68012 AGAATGTCATTGTTTTTAAAAAAAATTCCC
1 AAAATGTCACCG-TTTTACAAATAATTCCC
*
68042 AAAATGTCAAC-TTTT-CAAAATAATTCCC
1 AAAATGTCACCGTTTTAC-AAATAATTCCC
* * *
68070 AAAATGTGACCCTTTT-CAAAATAATTCCT
1 AAAATGTCACCGTTTTAC-AAATAATTCCC
* *
68099 AAAATGTCA-CTTTTTTCAAAATAATTCCC
1 AAAATGTCACCGTTTTAC-AAATAATTCCC
68128 AAAATGT
1 AAAATGT
68135 TACTGGGTCG
Statistics
Matches: 154, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
28 28 0.18
29 91 0.59
30 35 0.23
ACGTcount: A:0.42, C:0.18, G:0.05, T:0.35
Consensus pattern (29 bp):
AAAATGTCACCGTTTTACAAATAATTCCC
Found at i:68062 original size:58 final size:57
Alignment explanation
Indices: 67924--68134 Score: 201
Period size: 58 Copynumber: 3.6 Consensus size: 57
67914 GAAAATTACA
* * * * *
67924 AAAATATCACCTTTATTAAAAATAATTACCAAAATTTCACCGTTTTACAAATAATTCCC
1 AAAATGTCAACTTT-TTCAAAATAATTACCAAAATGTCA-CGTTTTAAAAATAATTCCC
* * * * * *
67983 AAAATGTCATCGTTTTAAAAATAATTACCAGAATGTCATTGTTTTTAAAAAAAATTCCC
1 AAAATGTCAACTTTTTCAAAATAATTACCAAAATGTCA-CG-TTTTAAAAATAATTCCC
* * * * *
68042 AAAATGTCAAC-TTTTCAAAATAATTCCCAAAATGTGACCCTTTTCAAAATAATTCCT
1 AAAATGTCAACTTTTTCAAAATAATTACCAAAATGTCA-CGTTTTAAAAATAATTCCC
*
68099 AAAATGTC-ACTTTTTTCAAAATAATTCCCAAAATGT
1 AAAATGTCAAC-TTTTTCAAAATAATTACCAAAATGT
68135 TACTGGGTCG
Statistics
Matches: 129, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
56 2 0.02
57 22 0.17
58 69 0.53
59 36 0.28
ACGTcount: A:0.42, C:0.18, G:0.05, T:0.35
Consensus pattern (57 bp):
AAAATGTCAACTTTTTCAAAATAATTACCAAAATGTCACGTTTTAAAAATAATTCCC
Found at i:68943 original size:27 final size:27
Alignment explanation
Indices: 68905--68998 Score: 170
Period size: 27 Copynumber: 3.5 Consensus size: 27
68895 AAAAACACTG
*
68905 CTGAATTATTCAGCATTAAAGTACATT
1 CTGAATGATTCAGCATTAAAGTACATT
68932 CTGAATGATTCAGCATTAAAGTACATT
1 CTGAATGATTCAGCATTAAAGTACATT
*
68959 CTGAATGATTTAGCATTAAAGTACATT
1 CTGAATGATTCAGCATTAAAGTACATT
68986 CTGAATGATTCAG
1 CTGAATGATTCAG
68999 AACTATTATC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (27 bp):
CTGAATGATTCAGCATTAAAGTACATT
Found at i:78830 original size:20 final size:20
Alignment explanation
Indices: 78791--78830 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
78781 TTTTTTTTTA
*
78791 CATTCACATCTTTGCATTTG
1 CATTCACATCTTTACATTTG
* *
78811 CATTCGCATCTTTACGTTTG
1 CATTCACATCTTTACATTTG
78831 TATTTATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.17, C:0.25, G:0.12, T:0.45
Consensus pattern (20 bp):
CATTCACATCTTTACATTTG
Found at i:79843 original size:54 final size:54
Alignment explanation
Indices: 79778--79903 Score: 234
Period size: 54 Copynumber: 2.3 Consensus size: 54
79768 TAACTAGACA
* *
79778 TCCTCATCACGAAAGAACTATGTTATCTCAAATATCTTTAAAGATGACTAGATG
1 TCCTCATCACGAAGGAACTATGTTATCTCAAATATCTTTAAAGATGACCAGATG
79832 TCCTCATCACGAAGGAACTATGTTATCTCAAATATCTTTAAAGATGACCAGATG
1 TCCTCATCACGAAGGAACTATGTTATCTCAAATATCTTTAAAGATGACCAGATG
79886 TCCTCATCACGAAGGAAC
1 TCCTCATCACGAAGGAAC
79904 AATATCATCT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (54 bp):
TCCTCATCACGAAGGAACTATGTTATCTCAAATATCTTTAAAGATGACCAGATG
Found at i:79975 original size:191 final size:191
Alignment explanation
Indices: 79640--80050 Score: 633
Period size: 191 Copynumber: 2.2 Consensus size: 191
79630 ATAACCAGAC
** *
79640 GTCCTCATCACGAAAGAACCGTGTTATCTCAAATATCTTCAAAGATGGCCAGATGGCCTCATCAC
1 GTCCTCATCACGAAAGAACAATGTTATCTCAAATATCTTCAAAGATGACCAGATGGCCTCATCAC
* * * *
79705 GAATGAACAATGTCATCTACCAATCAGAACTCCTCATCACGAATGAGTCGTGTCATCCTTAAATA
66 GAAGGAACAATATCATCTACCAATCAGAACTCCTCATCACAAAGGAGTCGTGTCATCCTTAAATA
* * * *
79770 ACTAGACATCCTCATCACGAAAGAACTATGTTATCTCAAATATCTTTAAAGATGACTAGAT
131 ACCAGACATCCTCATCACGAAAGAACTATGTTATCTCAAATATCTTCAAAGATGACCAAAT
* * * *
79831 GTCCTCATCACGAAGGAACTATGTTATCTCAAATATCTTTAAAGATGACCAGATGTCCTCATCAC
1 GTCCTCATCACGAAAGAACAATGTTATCTCAAATATCTTCAAAGATGACCAGATGGCCTCATCAC
*
79896 GAAGGAACAATATCATCTACCAATCAGAACTCCTCATCACAAAGGAGTCGTGTCATCCTTAGATA
66 GAAGGAACAATATCATCTACCAATCAGAACTCCTCATCACAAAGGAGTCGTGTCATCCTTAAATA
* * * *
79961 ACCAGACGTCCTCATCACGAAGGAACTGTGTTATCTCAAATATCTTCAAAGATGGCCAAAT
131 ACCAGACATCCTCATCACGAAAGAACTATGTTATCTCAAATATCTTCAAAGATGACCAAAT
*
80022 GTCCTCATCACGAAAGAACAATGTCATCT
1 GTCCTCATCACGAAAGAACAATGTTATCT
80051 ACCAATCAGA
Statistics
Matches: 198, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
191 198 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.26
Consensus pattern (191 bp):
GTCCTCATCACGAAAGAACAATGTTATCTCAAATATCTTCAAAGATGACCAGATGGCCTCATCAC
GAAGGAACAATATCATCTACCAATCAGAACTCCTCATCACAAAGGAGTCGTGTCATCCTTAAATA
ACCAGACATCCTCATCACGAAAGAACTATGTTATCTCAAATATCTTCAAAGATGACCAAAT
Found at i:80078 original size:137 final size:137
Alignment explanation
Indices: 79831--80186 Score: 498
Period size: 137 Copynumber: 2.6 Consensus size: 137
79821 ATGACTAGAT
* *
79831 GTCCTCATCACGAAGGAACTATGTTATCTCAAATATCTTTAAAGATGACCAGATGTCCTCATCAC
1 GTCCTCATCACGAAGGAACTATGTTATCTCAAATATCTTCAAAGATGACCAAATGTCCTCATCAC
*
79896 GAAGGAACAATATCATCTACCAATCAGAACTCCTCATCACAAAGGAGTCGTGTCATCCTTAGATA
66 GAAGGAACAATGTCATCTACCAATCAGAACTCCTCATCACAAAGGAGTCGTGTCATCCTTAGATA
* *
79961 ACCAGAC
131 ACCAAAA
* *
79968 GTCCTCATCACGAAGGAACTGTGTTATCTCAAATATCTTCAAAGATGGCCAAATGTCCTCATCAC
1 GTCCTCATCACGAAGGAACTATGTTATCTCAAATATCTTCAAAGATGACCAAATGTCCTCATCAC
* * * * **
80033 GAAAGAACAATGTCATCTACCAATCAGAACTTCTCATCACGAAGGAGTCGTGTCATTCTTTTATA
66 GAAGGAACAATGTCATCTACCAATCAGAACTCCTCATCACAAAGGAGTCGTGTCATCCTTAGATA
*
80098 GCCAAAA
131 ACCAAAA
* * * * * *
80105 GTCCTTATCACAAAGGAACCATGCTATCTCAATTTATC-TCTAAACATGACCAAATGTCCTCATC
1 GTCCTCATCACGAAGGAACTATGTTATCTCAA-ATATCTTC-AAAGATGACCAAATGTCCTCATC
*
80169 ATGAAGGAACAATGTCAT
64 ACGAAGGAACAATGTCAT
80187 ACACCAGTTG
Statistics
Matches: 193, Mismatches: 24, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
137 152 0.79
138 41 0.21
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (137 bp):
GTCCTCATCACGAAGGAACTATGTTATCTCAAATATCTTCAAAGATGACCAAATGTCCTCATCAC
GAAGGAACAATGTCATCTACCAATCAGAACTCCTCATCACAAAGGAGTCGTGTCATCCTTAGATA
ACCAAAA
Found at i:80361 original size:3 final size:3
Alignment explanation
Indices: 80353--80405 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
80343 GTCATTTTTA
80353 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
80401 TAT TA
1 TAT TA
80406 AATAATAAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:81068 original size:19 final size:19
Alignment explanation
Indices: 81044--81085 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
81034 AGAGAGAAGG
81044 GAGAGCTTCTCTCTCTTTC
1 GAGAGCTTCTCTCTCTTTC
*
81063 GAGAGCTTCTCTCTCTTTG
1 GAGAGCTTCTCTCTCTTTC
81082 GAGA
1 GAGA
81086 TAAGCAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.14, C:0.26, G:0.21, T:0.38
Consensus pattern (19 bp):
GAGAGCTTCTCTCTCTTTC
Found at i:81301 original size:5 final size:5
Alignment explanation
Indices: 81291--81316 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
81281 TGGTTTTTAG
81291 ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT A
81317 ATCATTAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:81544 original size:118 final size:119
Alignment explanation
Indices: 81420--81660 Score: 256
Period size: 118 Copynumber: 2.0 Consensus size: 119
81410 TAGGGTTAAA
* * * * * *
81420 TTACACTATTAGTAATTATATTTTATAATATTTTGAATTAAGACCATTAATTTAT-ATATTTATA
1 TTACACTAATAATAACTAGATTTCATAATATTTAGAATTAAGACCATTAATTT-TGATATTT-TA
* ** *
81484 CAA-TTTAATCAC-TGAGGTTTAATATTTTAATTTTAAATAATA-TTTTAGGATTAT
64 CAATTTTAATC-CTTGAGGTTTAAAATAATAATTTTAAATAATATTTTTAGAATTAT
* * * ***
81538 TTACACTAATAATACCTAGATTTCATGATATTTAGAATTAGGATTTTTAATTTTGATATTTTACA
1 TTACACTAATAATAACTAGATTTCATAATATTTAGAATTAAGACCATTAATTTTGATATTTTACA
* * *
81603 ATTTTAATCCTTTAGTTTTAAAATAATAATTTTAAATATTATTTTTAGAATTAT
66 ATTTTAATCCTTGAGGTTTAAAATAATAATTTTAAATAATATTTTTAGAATTAT
81657 TTAC
1 TTAC
81661 TATTATAGTA
Statistics
Matches: 100, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
117 7 0.07
118 78 0.78
119 15 0.15
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.49
Consensus pattern (119 bp):
TTACACTAATAATAACTAGATTTCATAATATTTAGAATTAAGACCATTAATTTTGATATTTTACA
ATTTTAATCCTTGAGGTTTAAAATAATAATTTTAAATAATATTTTTAGAATTAT
Found at i:86021 original size:13 final size:13
Alignment explanation
Indices: 86003--86028 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85993 AACAGACAAA
86003 GACATCTCTCTCC
1 GACATCTCTCTCC
86016 GACATCTCTCTCC
1 GACATCTCTCTCC
86029 TTTAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.46, G:0.08, T:0.31
Consensus pattern (13 bp):
GACATCTCTCTCC
Found at i:89050 original size:24 final size:24
Alignment explanation
Indices: 89000--89047 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
88990 ATCCATATCA
* **
89000 TAATATTATAAATTTAAATTTAAT
1 TAATATTATAAAATTAAATAAAAT
89024 TAATATTA-AAAATTAAATAAAAT
1 TAATATTATAAAATTAAATAAAAT
89047 T
1 T
89048 TAAATGTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
TAATATTATAAAATTAAATAAAAT
Found at i:95219 original size:20 final size:22
Alignment explanation
Indices: 95180--95219 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
95170 GCTTGTATAT
*
95180 CAGACTCAACTAACTCACCTAA
1 CAGACTCAACTAACTAACCTAA
95202 CAGACTC-A-TAACTAACCT
1 CAGACTCAACTAACTAACCT
95220 CTAACAGCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 1 0.06
22 7 0.41
ACGTcount: A:0.40, C:0.35, G:0.05, T:0.20
Consensus pattern (22 bp):
CAGACTCAACTAACTAACCTAA
Found at i:99909 original size:22 final size:24
Alignment explanation
Indices: 99884--99937 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
99874 TGTATACCAA
*
99884 ACTCAACTAACTCA-CT-TAACAG
1 ACTCAACTAACTAATCTCTAACAG
99906 ACTC-A-TAACTAATCTCTAACAG
1 ACTCAACTAACTAATCTCTAACAG
*
99928 CCTCAACTAA
1 ACTCAACTAA
99938 TCTTGACTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 6 0.23
21 3 0.12
22 13 0.50
23 1 0.04
24 3 0.12
ACGTcount: A:0.41, C:0.31, G:0.04, T:0.24
Consensus pattern (24 bp):
ACTCAACTAACTAATCTCTAACAG
Found at i:101074 original size:23 final size:23
Alignment explanation
Indices: 101048--101099 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
101038 ACATTTTTAA
*
101048 ATTTAATATTTT-AATTTATATAT
1 ATTTAATATTTTGAA-TTAAATAT
*
101071 ATTTAAAATTTTGAATTAAATAT
1 ATTTAATATTTTGAATTAAATAT
101094 -TTTAAT
1 ATTTAAT
101100 GAAAAATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 5 0.20
23 18 0.72
24 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
ATTTAATATTTTGAATTAAATAT
Found at i:102321 original size:21 final size:21
Alignment explanation
Indices: 102286--102349 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 21
102276 TAATATAATT
102286 TTTTTATATACTAACTTAAAATA
1 TTTTTATAT--TAACTTAAAATA
102309 TTTTTATATTAACTTATTAAATA
1 TTTTTATATTAACTTA--AAATA
*
102332 TTTTTACTATTAGCTTAA
1 TTTTTA-TATTAACTTAA
102350 TTTAAAAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
21 7 0.19
22 1 0.03
23 20 0.54
24 9 0.24
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTTTATATTAACTTAAAATA
Found at i:102404 original size:25 final size:27
Alignment explanation
Indices: 102346--102405 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
102336 TACTATTAGC
* *
102346 TTAATTTAAAAATATGTTATTTTTATT
1 TTAATTTAAAAATATGATATATTTATT
*
102373 TTCATTTAAAAATAT-ATA-ATTTATT
1 TTAATTTAAAAATATGATATATTTATT
102398 TTAATTTA
1 TTAATTTA
102406 TTAAAAGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 13 0.45
26 2 0.07
27 14 0.48
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (27 bp):
TTAATTTAAAAATATGATATATTTATT
Found at i:103040 original size:5 final size:5
Alignment explanation
Indices: 103032--103082 Score: 102
Period size: 5 Copynumber: 10.2 Consensus size: 5
103022 AATTATATAT
103032 ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA
1 ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA
103082 A
1 A
103083 ATTATCAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
ATAGA
Found at i:103229 original size:30 final size:30
Alignment explanation
Indices: 103194--103255 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
103184 ACAAGTGCTC
*
103194 AAATTATACTAATTTT-TC-ATTTAGGTGTCT
1 AAATTAT--TAATTTTATCAATTTAGGTGCCT
*
103224 AAATTATTATTTTTATCAATTTAGGTGCCT
1 AAATTATTAATTTTATCAATTTAGGTGCCT
103254 AA
1 AA
103256 TTTTTTCAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 6 0.21
29 2 0.07
30 20 0.71
ACGTcount: A:0.32, C:0.10, G:0.10, T:0.48
Consensus pattern (30 bp):
AAATTATTAATTTTATCAATTTAGGTGCCT
Found at i:105149 original size:17 final size:18
Alignment explanation
Indices: 105124--105157 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
105114 TATAAACAAT
105124 TATTAATTTTAAAAGAAA
1 TATTAATTTTAAAAGAAA
*
105142 TATT-ATTTTAATAGAA
1 TATTAATTTTAAAAGAA
105158 CTTGTCACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (18 bp):
TATTAATTTTAAAAGAAA
Found at i:105959 original size:35 final size:35
Alignment explanation
Indices: 105913--105988 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
105903 AACACAATCC
* *
105913 TCAATTTCATTTTAAACACTAAATTCCAAAATAAT
1 TCAATTACATTTTAAACACCAAATTCCAAAATAAT
* * *
105948 TCAATTACATTTTAAACCCCAAATTCTAAAATACT
1 TCAATTACATTTTAAACACCAAATTCCAAAATAAT
105983 TCAATT
1 TCAATT
105989 TAGTGTTTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (35 bp):
TCAATTACATTTTAAACACCAAATTCCAAAATAAT
Found at i:110400 original size:35 final size:35
Alignment explanation
Indices: 110326--110400 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 35
110316 TTCATGTTCA
* *
110326 AAATTCTAAAACACTTCAATTACATTCTAAACCCC
1 AAATTCCAAAACACTTCAATTACATTCTAAACACC
* * *
110361 AAATTCCAAAATACTTCAATTACATTCTAAATACT
1 AAATTCCAAAACACTTCAATTACATTCTAAACACC
110396 AAATT
1 AAATT
110401 GAAGTATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (35 bp):
AAATTCCAAAACACTTCAATTACATTCTAAACACC
Found at i:110437 original size:35 final size:35
Alignment explanation
Indices: 110396--110472 Score: 100
Period size: 35 Copynumber: 2.2 Consensus size: 35
110386 TCTAAATACT
110396 AAATTGAAGTATTTTAGAATTTAGGGTTTAAAATA
1 AAATTGAAGTATTTTAGAATTTAGGGTTTAAAATA
* * * * * *
110431 TAATTGAATTATTTTGGAGTTTGGGGTTTAGAATA
1 AAATTGAAGTATTTTAGAATTTAGGGTTTAAAATA
110466 AAATTGA
1 AAATTGA
110473 GGATTGTGTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.42
Consensus pattern (35 bp):
AAATTGAAGTATTTTAGAATTTAGGGTTTAAAATA
Found at i:116134 original size:195 final size:195
Alignment explanation
Indices: 115802--116193 Score: 606
Period size: 195 Copynumber: 2.0 Consensus size: 195
115792 TTTGATTGTC
*
115802 AGGTTTTGTCTGATTTAGGTGACTAATTGATTAAATATCTTGACCCGTTTCATTTCAGCTGCCAG
1 AGGTTTTGTCTGATTTAGGTGACTAATTGACTAAATATCTTGACCCGTTTCATTTCAGCTGCCAG
* *
115867 TTGGAATTATTTACGTTACAATTAATCGATTTCGAGACAGGATTTCTTGTTTTCAATAATGTATC
66 TTGGAATTATTTACGTTACAATTAATAGATTTCGAGACAGGATTTCTTGTTTTCAATAATGTAGC
* * * *
115932 TCTTCTTCTCCTTCATTGAGCATAGAAGGAACGATTTGGAAGAAACTGATAAAGTCGTTTTTGAA
131 TCTTCTTCTCCTTCATTGAGCATAGAAGCAACGATTTGGAAGAAACTAACAAAGTCATTTTTGAA
* * * * *
115997 AGGTTTTGT-TGGATTTTGGTGACTCATTGACTAAATATCTTGATCTGTTTCATTTCAGCTTCCA
1 AGGTTTTGTCT-GATTTAGGTGACTAATTGACTAAATATCTTGACCCGTTTCATTTCAGCTGCCA
* ** * *
116061 GTTGGAATTATTTACGTTAGAATTAATAGATTTCGTTATAGGATTTGTTGTTTTCAATAATGTAG
65 GTTGGAATTATTTACGTTACAATTAATAGATTTCGAGACAGGATTTCTTGTTTTCAATAATGTAG
*
116126 CTCTTCTTCTCCTTCATTGAGCATAGAAGCAACGATTTGGAAGAAACTAACAATGTCATTTTTGA
130 CTCTTCTTCTCCTTCATTGAGCATAGAAGCAACGATTTGGAAGAAACTAACAAAGTCATTTTTGA
116191 A
195 A
116192 AG
1 AG
116194 ATTTACTTTT
Statistics
Matches: 178, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
194 1 0.01
195 177 0.99
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (195 bp):
AGGTTTTGTCTGATTTAGGTGACTAATTGACTAAATATCTTGACCCGTTTCATTTCAGCTGCCAG
TTGGAATTATTTACGTTACAATTAATAGATTTCGAGACAGGATTTCTTGTTTTCAATAATGTAGC
TCTTCTTCTCCTTCATTGAGCATAGAAGCAACGATTTGGAAGAAACTAACAAAGTCATTTTTGAA
Found at i:116571 original size:18 final size:18
Alignment explanation
Indices: 116550--116601 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
116540 TACAGTGAGT
*
116550 TTGTTTTTTTTCCTATTG
1 TTGTCTTTTTTCCTATTG
116568 TTGTCTTTTTTCCTATTG
1 TTGTCTTTTTTCCTATTG
*
116586 TTGTCTTGTTTCCTAT
1 TTGTCTTTTTTCCTAT
116602 ACCTGTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.06, C:0.15, G:0.12, T:0.67
Consensus pattern (18 bp):
TTGTCTTTTTTCCTATTG
Found at i:123143 original size:16 final size:16
Alignment explanation
Indices: 123122--123153 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
123112 TTTTGCAACT
123122 TTTGTTTTCAGAATAA
1 TTTGTTTTCAGAATAA
*
123138 TTTGTTTTCATAATAA
1 TTTGTTTTCAGAATAA
123154 ATGAGTGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.53
Consensus pattern (16 bp):
TTTGTTTTCAGAATAA
Found at i:128877 original size:16 final size:16
Alignment explanation
Indices: 128856--128887 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
128846 TTTTGCAACT
128856 TTTGTTTTCAGAATAA
1 TTTGTTTTCAGAATAA
*
128872 TTTGTTTTCATAATAA
1 TTTGTTTTCAGAATAA
128888 ATGAGTGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.53
Consensus pattern (16 bp):
TTTGTTTTCAGAATAA
Found at i:134612 original size:16 final size:16
Alignment explanation
Indices: 134591--134623 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
134581 TTTTGCAACT
134591 TTTGTTTTCAGAATAA
1 TTTGTTTTCAGAATAA
*
134607 TTTGTTTTCATAATAA
1 TTTGTTTTCAGAATAA
134623 T
1 T
134624 GAGTGTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.06, G:0.09, T:0.55
Consensus pattern (16 bp):
TTTGTTTTCAGAATAA
Found at i:136557 original size:21 final size:21
Alignment explanation
Indices: 136527--136574 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
136517 GCAGGGGTAC
* *
136527 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
136548 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTCAT
136569 ATGCCA
1 ATGCCA
136575 TCTCCGCATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:136671 original size:21 final size:20
Alignment explanation
Indices: 136578--136668 Score: 119
Period size: 21 Copynumber: 4.3 Consensus size: 20
136568 TATGCCATCT
* *
136578 CCGCATGGTTACATTCCGAGC
1 CCGCA-GGTTACATGCCTAGC
*
136599 CCGCAGGGTTACATTCCTAGC
1 CCGCA-GGTTACATGCCTAGC
136620 CCGCCAGGTTACATGCCTAGC
1 CCG-CAGGTTACATGCCTAGC
136641 CCGCCAGGTTACATGCCTAGC
1 CCG-CAGGTTACATGCCTAGC
136662 CCGCAGG
1 CCGCAGG
136669 GTTTTATACC
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.06
21 60 0.91
22 2 0.03
ACGTcount: A:0.19, C:0.36, G:0.25, T:0.20
Consensus pattern (20 bp):
CCGCAGGTTACATGCCTAGC
Found at i:137244 original size:34 final size:34
Alignment explanation
Indices: 137194--137290 Score: 124
Period size: 33 Copynumber: 2.9 Consensus size: 34
137184 AAATGTTTTT
*
137194 AAAATACAAATTATATTATTCGAAATTTAAAATA
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* * *
137228 AAAATAAAAATAATATTATTC-AAATTTAAATTT
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* * *
137261 AAAATATAAATTATAGTATTTGAAATTTAA
1 AAAATAAAAATTATATTATTCGAAATTTAA
137291 CATTAAATTT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
33 27 0.50
34 27 0.50
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (34 bp):
AAAATAAAAATTATATTATTCGAAATTTAAAATA
Found at i:137297 original size:34 final size:33
Alignment explanation
Indices: 137192--137297 Score: 115
Period size: 34 Copynumber: 3.2 Consensus size: 33
137182 ATAAATGTTT
* *
137192 TTAAAATACAAATTATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTTGAAATTT-AAA
* * *
137226 TAAAAATAAAAATAATATTA-TTCAAATTTAAA
1 TTAAAATAAAAATTATATTATTTGAAATTTAAA
* *
137258 TTTAAAATATAAATTATAGTATTTGAAATTTAACA
1 -TTAAAATAAAAATTATATTATTTGAAATTTAA-A
137293 TTAAA
1 TTAAA
137298 TTTCAACTTA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
32 3 0.05
33 23 0.39
34 32 0.54
35 1 0.02
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.39
Consensus pattern (33 bp):
TTAAAATAAAAATTATATTATTTGAAATTTAAA
Found at i:141025 original size:30 final size:29
Alignment explanation
Indices: 140972--141047 Score: 111
Period size: 30 Copynumber: 2.7 Consensus size: 29
140962 TTCTAAGGGC
*
140972 GTCCTAATAATTTTGA--TTTTTAACTTA
1 GTCCTAATAATTTTGATTTTTTTAACATA
*
140999 GTCCTAATAACTTTGATTTCTTTTAACATA
1 GTCCTAATAATTTTGATTT-TTTTAACATA
141029 GTCCTAATAATTTTGATTT
1 GTCCTAATAATTTTGATTT
141048 GGGATATACA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 15 0.35
29 1 0.02
30 27 0.63
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50
Consensus pattern (29 bp):
GTCCTAATAATTTTGATTTTTTTAACATA
Found at i:145034 original size:37 final size:38
Alignment explanation
Indices: 144949--145035 Score: 108
Period size: 37 Copynumber: 2.3 Consensus size: 38
144939 ATTAAATTTT
*
144949 TTTTATATTTTTAATTTTGTAAAAAAAATTATATAAATA
1 TTTTATA-ATTTAATTTTGTAAAAAAAATTATATAAATA
* *
144988 --TTATGAATTTAATTTTTTAAAGAAAA-TATATAAATA
1 TTTTAT-AATTTAATTTTGTAAAAAAAATTATATAAATA
145024 TTTTATAATTTA
1 TTTTATAATTTA
145036 TAATATTATG
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
36 10 0.24
37 27 0.64
38 5 0.12
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (38 bp):
TTTTATAATTTAATTTTGTAAAAAAAATTATATAAATA
Found at i:145205 original size:20 final size:20
Alignment explanation
Indices: 145180--145217 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
145170 ATCATATTCT
*
145180 CTGGTAATCTTTTATTCCTA
1 CTGGTAATCTTATATTCCTA
145200 CTGGTAATCTTATATTCC
1 CTGGTAATCTTATATTCC
145218 GTGAACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (20 bp):
CTGGTAATCTTATATTCCTA
Found at i:146215 original size:16 final size:17
Alignment explanation
Indices: 146194--146238 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 17
146184 AACATTCTCT
146194 GTAATCTTATTCCC-TG
1 GTAATCTTATTCCCATG
146210 GTAATCTTACATTCCCATTG
1 GTAATCTT--ATTCCCA-TG
146230 GTAATCTTA
1 GTAATCTTA
146239 CATTTCGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 8 0.32
18 7 0.28
20 10 0.40
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.42
Consensus pattern (17 bp):
GTAATCTTATTCCCATG
Found at i:153966 original size:76 final size:76
Alignment explanation
Indices: 153857--154010 Score: 220
Period size: 76 Copynumber: 2.0 Consensus size: 76
153847 TATCACCCAT
153857 CAAATTGTTAAACCTTTAATGATAGTTTAGAGTAAGTGACAAT-AAACCTTTAACAGCCGATTAG
1 CAAATTGTTAAACCTTTAATGATAGTTTAGAGTAAGTGAC-ATCAAACCTTTAACAGCCGATTAG
153921 GGTAAATGACCA
65 GGTAAATGACCA
* * * * * * *
153933 CAAATTGTTAAACCTTTAATGGTCGTTTAGAGTAAGTGGCCTCACACCTTTAACGGCTGATTAGG
1 CAAATTGTTAAACCTTTAATGATAGTTTAGAGTAAGTGACATCAAACCTTTAACAGCCGATTAGG
*
153998 GTAAATGGCCA
66 GTAAATGACCA
154009 CA
1 CA
154011 TCTTAATTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
75 1 0.01
76 68 0.99
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.29
Consensus pattern (76 bp):
CAAATTGTTAAACCTTTAATGATAGTTTAGAGTAAGTGACATCAAACCTTTAACAGCCGATTAGG
GTAAATGACCA
Found at i:158504 original size:22 final size:22
Alignment explanation
Indices: 158448--158506 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
158438 ACATATATTT
* * *
158448 ATATAAATATATTTTTATTCAT
1 ATATTAATATATTTTTATTAAA
* *
158470 ATATTTAA-GTATTTTTGTTAAA
1 ATA-TTAATATATTTTTATTAAA
158492 ATATTAATATATTTT
1 ATATTAATATATTTT
158507 AAATATTAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
21 4 0.14
22 22 0.76
23 3 0.10
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (22 bp):
ATATTAATATATTTTTATTAAA
Found at i:162229 original size:24 final size:23
Alignment explanation
Indices: 162188--162260 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 23
162178 TATTACATAT
*
162188 AAAATATAAAATATTTAAATATTCA
1 AAAAAATAAAA-A-TTAAATATTCA
162213 AAAAAATAAAGAATTAAATATT--
1 AAAAAATAAA-AATTAAATATTCA
*
162235 -AAAAATAAAAATTAAATTACTCA
1 AAAAAATAAAAATTAAA-TATTCA
162258 AAA
1 AAA
162261 TATTAAATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
20 7 0.17
21 12 0.29
24 11 0.27
25 10 0.24
26 1 0.02
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (23 bp):
AAAAAATAAAAATTAAATATTCA
Found at i:162793 original size:27 final size:26
Alignment explanation
Indices: 162740--162816 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 26
162730 TAATTTTTGC
**
162740 TAATATATATATTAATTTTATAGTTTT
1 TAATATATATATTAATTTTA-AAATTT
162767 TAATATATAT-TTAGATTTTAAAATTT
1 TAATATATATATTA-ATTTTAAAATTT
*
162793 TAATCATATTACTATTTATTTTAA
1 TAAT-ATA-TA-TATTAATTTTAA
162817 TATACATAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
26 11 0.26
27 19 0.45
28 2 0.05
29 8 0.19
30 2 0.05
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (26 bp):
TAATATATATATTAATTTTAAAATTT
Found at i:163375 original size:36 final size:36
Alignment explanation
Indices: 163335--163404 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
163325 CTACTGCAAA
163335 CAAAGCAAAAACCTTTGTTAAACCCTATAAATTCGG
1 CAAAGCAAAAACCTTTGTTAAACCCTATAAATTCGG
163371 CAAAGCAAAAACCTTTGTTAAACCCTATAAATTC
1 CAAAGCAAAAACCTTTGTTAAACCCTATAAATTC
163405 AGCACCGTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.26
Consensus pattern (36 bp):
CAAAGCAAAAACCTTTGTTAAACCCTATAAATTCGG
Found at i:166342 original size:32 final size:32
Alignment explanation
Indices: 166301--166365 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
166291 AAGATTAAAA
*
166301 GACACAAATTTCGTCCATATCGAATATCCTCT
1 GACACAAATTTCATCCATATCGAATATCCTCT
166333 GACACAAATTTCATCCATATCGAATATCCTCT
1 GACACAAATTTCATCCATATCGAATATCCTCT
166365 G
1 G
166366 TCATAGAGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (32 bp):
GACACAAATTTCATCCATATCGAATATCCTCT
Found at i:167211 original size:193 final size:196
Alignment explanation
Indices: 166716--167454 Score: 1048
Period size: 193 Copynumber: 3.7 Consensus size: 196
166706 CAATGCAAGA
* * * *
166716 TGCGTTGTTTCGAGGCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTAAAACTGGGAAATTA
1 TGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGC-C-----CT--GAAATTA
* * * * * * *
166781 CTTGTTGACAACCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTAGAGCCCAATCTCC
58 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
* * *
166846 TTCATTATGAAGTTGAAATTGGCTCTGAAATCGGGAAGTTGTTTATTGACAACCAGCGGT-CCTT
123 TTCGTTGTGAAGTTGAAATTGGCCCT--AA-----AA-TTGTTTATTGACAACCAGCGGTCCCTT
166910 CGTCGTGAAGTTGAAC-
180 CGTCGTGAAGTTGAACT
* * *
166926 TGCGTTGTCTGGAGTCCAATATCATTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGTTTATTGA
1 TGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCCCTGAAATTATTTATTGA
166991 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGT
66 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGT
*
167056 GAAGTTG-AATTGGGCCCTAAAATTATTTATTG-CAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
131 GAAGTTGAAATT-GGCCCTAAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
167119 CT
195 CT
*
167121 TGCGTTGTCTGGA-TCCCAATATCCTTCGTT-TGAAGTTGAAATTGGCCCTAAAATT-TTTATTG
1 TGCGTTGTCTGGAGT-CCAATATCCTTCGTTGTGAAGTTGAAATTGGCCCTGAAATTATTTATTG
*
167183 ACAACCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC-ATATCCTTCGTTG
65 ACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
* *
167247 TGAAGTTGAAATTGGCCCTGAAATTGTTTA-TGACAA-CAGAGGTCCCTTCGTCGTGAAGTTGAA
130 TGAAGTTGAAATTGGCCCTAAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
167310 CT
195 CT
167312 TGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCCCTGAAATTATTTATTGA
1 TGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCCCTGAAATTATTTATTGA
167377 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGT
66 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGT
167442 GAAGTTGAAATTG
131 GAAGTTGAAATTG
167455 ACTCTGGGTA
Statistics
Matches: 492, Mismatches: 27, Indels: 36
0.89 0.05 0.06
Matches are distributed among these distances:
191 58 0.12
192 64 0.13
193 129 0.26
194 80 0.16
195 29 0.06
200 2 0.00
201 4 0.01
202 82 0.17
204 2 0.00
210 42 0.09
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (196 bp):
TGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCCCTGAAATTATTTATTGA
CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGT
GAAGTTGAAATTGGCCCTAAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
T
Found at i:167219 original size:96 final size:98
Alignment explanation
Indices: 166887--167454 Score: 976
Period size: 96 Copynumber: 5.9 Consensus size: 98
166877 CGGGAAGTTG
*
166887 TTTATTGACAACCAGCGGT-CCTTCGTCGTGAAGTTGAAC-TGCGTTGTCTGGAGTCCAATATCA
1 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
* *
166950 TTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
66 TTCGTTGTGAAGTTGAAATTGGCCCTGAAATTA
166983 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
1 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
*
167048 TTCGTTGTGAAGTTG-AATTGGGCCCTAAAATTA
66 TTCGTTGTGAAGTTGAAATT-GGCCCTGAAATTA
167081 TTTATTG-CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA-TCCCAATATC
1 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT-CCAATATC
*
167144 CTTCGTT-TGAAGTTGAAATTGGCCCTAAAATT-
65 CTTCGTTGTGAAGTTGAAATTGGCCCTGAAATTA
*
167176 TTTATTGACAACCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC-ATATCC
1 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
*
167240 TTCGTTGTGAAGTTGAAATTGGCCCTGAAATTG
66 TTCGTTGTGAAGTTGAAATTGGCCCTGAAATTA
*
167273 TTTA-TGACAA-CAGAGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
1 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
167336 TTCGTTGTGAAGTTGAAATTGGCCCTGAAATTA
66 TTCGTTGTGAAGTTGAAATTGGCCCTGAAATTA
167369 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
1 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
167434 TTCGTTGTGAAGTTGAAATTG
66 TTCGTTGTGAAGTTGAAATTG
167455 ACTCTGGGTA
Statistics
Matches: 450, Mismatches: 10, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
95 63 0.14
96 159 0.35
97 100 0.22
98 128 0.28
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (98 bp):
TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
TTCGTTGTGAAGTTGAAATTGGCCCTGAAATTA
Done.