genome.fa.s2867.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002867.1 Hibiscus syriacus cultivar Beakdansim tig00005913_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126005

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465--867	196	2.1	194	81	7	494	32	19	11	36	1.87
4386--4439	29	2.0	28	89	10	85	24	0	29	46	1.53
5005--5036	13	2.5	13	95	5	57	0	6	28	65	1.16
15003--15169	30	5.7	29	81	9	187	39	9	1	49	1.43
15003--15169	59	2.8	60	85	5	209	39	9	1	49	1.43
16851--17235	159	2.4	158	85	5	494	46	6	18	28	1.74
19028--19052	11	2.3	11	100	0	50	84	0	0	16	0.63
19035--19071	18	2.2	16	90	9	56	75	2	2	18	1.04
19261--19321	29	2.1	28	84	3	77	72	0	6	21	1.07
19271--19318	24	2.0	25	87	4	71	70	0	6	22	1.09
19415--19458	22	2.0	23	90	4	72	56	0	6	36	1.26
19497--19532	2	18.5	2	88	5	56	55	0	0	44	0.99
19770--19818	3	16.7	3	83	12	50	26	0	0	73	0.83
31334--31381	22	2.3	22	89	10	75	37	8	16	37	1.79
32042--32952	46	20.0	46	89	3	1362	24	21	19	34	1.97
32042--32952	137	6.7	137	92	2	1433	24	21	19	34	1.97
32042--32952	183	5.0	182	90	3	1395	24	21	19	34	1.97
33178--33260	3	27.0	3	90	4	130	33	2	0	63	1.07
37605--37924	65	4.8	65	72	12	234	40	10	18	29	1.85
37737--38062	36	9.4	36	71	15	240	39	12	19	28	1.88
37749--37847	37	2.7	36	89	3	144	42	16	20	21	1.89
37683--37940	136	1.9	138	91	1	430	41	12	18	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37976--38048	37	2.0	37	86	0	101	39	12	21	26	1.89
37775--38216	102	4.4	102	87	2	518	37	11	19	31	1.87
38078--38150	37	2.0	37	86	0	101	38	12	17	31	1.87
37775--38297	204	2.6	201	80	5	579	38	11	18	31	1.86
38445--38767	106	3.0	106	89	0	459	22	19	24	34	1.96
39277--39386	32	3.4	32	84	5	114	37	20	12	29	1.90
39298--39386	34	2.7	32	85	3	115	38	22	10	29	1.87
40308--40445	69	2.0	69	97	2	260	26	14	21	37	1.92
40507--40555	21	2.3	22	82	10	57	6	14	4	75	1.14
40517--40561	21	2.2	20	84	7	56	4	13	4	77	1.07
41176--41237	27	2.3	27	97	0	115	32	3	20	43	1.68
42540--42569	13	2.3	13	94	0	51	20	46	20	13	1.83
43874--43908	18	1.9	18	88	0	52	54	0	17	28	1.43
45015--45092	24	3.2	24	85	7	104	23	15	17	43	1.87
48064--48123	16	3.5	17	77	11	61	75	0	3	21	0.95
48095--48188	34	2.8	31	76	19	84	64	2	4	28	1.23
50366--50539	87	2.0	87	100	0	348	43	11	17	27	1.83
51681--51741	27	2.2	27	85	8	79	31	3	8	57	1.44
68122--68157	16	2.2	16	90	9	56	44	16	13	25	1.85
69701--70167	103	4.5	103	75	9	301	38	15	14	31	1.88
74359--74754	156	2.6	151	86	2	542	35	20	16	26	1.94
75322--75528	102	2.0	102	87	1	299	24	25	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75690--75741	26	2.0	27	88	3	79	65	9	17	7	1.45
85520--85546	14	1.9	14	100	0	54	25	22	22	29	1.99
86396--86610	103	2.1	103	92	0	358	27	11	23	37	1.90
86620--86697	23	3.3	23	81	1	93	24	20	23	32	1.98
87571--87768	29	6.7	28	79	7	162	33	5	21	38	1.77
87601--87771	90	1.9	89	86	5	247	34	5	21	39	1.76
93702--93746	17	2.6	17	92	3	72	22	46	22	8	1.79
93748--93886	29	4.9	29	89	1	201	35	5	22	36	1.78
101643--101721	28	2.8	28	86	0	113	15	20	26	37	1.92
103110--103274	64	2.5	65	79	12	187	47	6	3	42	1.47
103615--103645	2	15.5	2	100	0	62	48	0	0	51	1.00
109658--109692	18	1.9	18	94	0	61	31	0	2	65	1.07
110782--110830	23	2.1	23	81	7	55	32	2	4	61	1.26
113925--113992	27	2.6	27	93	4	113	29	13	16	41	1.86
117687--117754	27	2.6	27	95	4	122	30	11	16	41	1.84

Tables:   1

The End!