genome.fa.s2868.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002868.1 Hibiscus syriacus cultivar Beakdansim tig00005915_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114281

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--34	3	11.3	3	93	0	59	35	0	2	61	1.11
1506--1559	2	28.0	2	85	14	78	48	1	0	50	1.11
13380--13431	16	3.4	16	84	10	56	78	1	11	7	1.02
13392--13445	29	1.9	27	85	7	72	79	0	11	9	0.93
13392--13437	14	3.2	14	82	14	58	80	0	8	10	0.91
14664--14918	105	2.4	105	82	2	305	39	17	18	25	1.91
15085--15127	3	14.7	3	85	4	61	37	0	2	60	1.10
17025--17051	14	1.9	14	100	0	54	18	0	7	74	1.05
17426--17462	15	2.3	16	90	9	58	29	5	2	62	1.31
21165--21199	15	2.5	15	90	9	56	74	0	0	25	0.82
28271--28359	24	3.7	24	95	0	160	24	21	21	32	1.98
37846--37874	14	2.1	14	100	0	58	31	6	27	34	1.83
40499--40690	63	2.9	66	75	13	187	41	5	8	44	1.58
40626--40691	34	1.9	34	85	11	91	39	4	7	48	1.52
46242--46401	59	2.7	60	77	1	151	45	5	15	33	1.70
46295--46418	60	2.1	59	83	3	151	49	4	12	33	1.60
49166--49231	20	3.5	19	83	6	89	36	24	24	15	1.93
49221--49277	14	3.8	14	78	17	69	47	26	17	8	1.77
49205--49282	32	2.4	32	97	0	147	46	24	19	10	1.81
49289--49384	19	5.6	17	72	21	78	11	19	22	45	1.82
49311--49368	14	3.9	14	79	16	71	8	17	25	48	1.75
49294--49384	32	2.8	33	94	3	166	10	18	23	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49369--49443	20	3.8	20	87	1	98	14	25	25	34	1.94
49922--49966	18	2.5	18	88	0	72	13	15	44	26	1.83
51279--51316	20	1.9	20	88	0	58	50	21	15	13	1.78
51557--51600	22	2.0	22	95	0	79	18	15	45	20	1.85
51788--51881	20	4.7	20	80	2	89	23	18	24	34	1.96
51808--51885	41	1.9	41	86	0	111	21	16	21	39	1.92
51768--51882	20	5.7	20	78	5	88	23	17	23	35	1.95
51897--51981	19	4.3	20	83	4	111	18	22	17	41	1.91
51844--51981	59	2.3	60	90	6	210	20	22	17	39	1.92
65904--65963	2	31.0	2	80	6	70	51	0	0	48	1.00
76995--77036	22	1.9	22	95	0	75	40	14	4	40	1.67
77982--78025	21	2.0	21	82	4	52	38	13	6	40	1.71
79810--79852	15	2.9	15	82	0	50	37	2	6	53	1.41
85099--85135	2	18.5	2	89	10	58	48	2	48	0	1.15
91273--91334	30	2.1	29	82	11	72	64	11	3	20	1.40
91547--91578	2	16.0	2	100	0	64	50	0	0	50	1.00
97187--97235	2	24.5	2	100	0	98	48	0	0	51	1.00
100755--100805	23	2.2	23	96	0	93	33	19	0	47	1.50
100875--100932	20	2.9	20	94	0	107	24	27	10	37	1.88
101153--101227	10	7.7	10	67	21	52	58	21	10	9	1.59
101160--101226	16	4.2	16	90	0	98	59	22	8	8	1.55
101157--101221	32	2.0	32	93	0	112	58	23	10	7	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102450--102539	33	2.7	33	92	0	153	24	20	26	28	1.99
102761--102816	24	2.3	24	90	0	85	55	21	8	14	1.66
103400--103431	3	10.7	3	100	0	64	65	0	0	34	0.93
110637--110692	3	18.7	3	100	0	112	66	0	0	33	0.92
113945--114008	18	3.6	18	73	23	62	51	28	14	6	1.66
114233--114262	15	2.0	15	100	0	60	40	20	13	26	1.89

Tables:   1

The End!