genome.fa.s2869.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002869.1 Hibiscus syriacus cultivar Beakdansim tig00005916_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91248

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7098--7141	20	2.2	20	84	4	63	65	0	15	18	1.27
22876--22970	45	2.1	45	88	1	138	34	20	18	26	1.96
22997--23034	20	1.9	20	94	0	67	34	15	21	28	1.94
27963--28104	64	2.2	63	83	4	178	33	19	22	25	1.97
28527--29397	435	2.0	435	99	0	1715	45	4	22	27	1.73
30142--30201	23	2.6	23	94	0	102	16	26	28	28	1.97
39208--39242	5	7.0	5	100	0	70	0	40	0	60	0.97
40583--40764	60	3.0	60	77	7	154	43	4	18	32	1.72
40663--40756	29	3.2	29	69	16	75	51	3	10	35	1.53
46070--46198	43	3.0	42	85	2	168	53	21	4	20	1.63
48594--48652	31	1.9	31	82	6	75	40	10	20	28	1.85
50678--50785	21	5.2	21	82	5	114	22	25	15	37	1.93
50678--50774	21	4.7	21	83	5	117	20	24	15	39	1.91
51648--51701	24	2.2	24	93	0	90	20	18	20	40	1.91
54173--54266	20	4.7	20	71	13	68	37	23	18	21	1.94
54219--54303	19	4.7	19	71	15	63	43	21	23	11	1.85
54304--54394	19	4.9	20	80	16	99	10	17	23	48	1.79
54314--54378	33	1.9	34	93	3	114	9	16	24	49	1.75
54359--54402	19	2.3	19	88	0	61	15	20	18	45	1.85
54502--54537	14	2.6	14	90	0	63	44	22	0	33	1.53
56349--56439	19	4.6	19	82	5	101	47	20	19	12	1.81
56349--56446	39	2.5	39	88	1	133	47	19	20	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56462--56571	19	5.9	19	83	12	131	7	19	24	49	1.73
56668--57043	94	4.1	94	92	2	584	47	18	11	22	1.81
58732--58837	20	5.7	20	75	17	104	47	17	22	12	1.81
58730--58842	40	3.1	39	76	17	141	46	17	23	12	1.82
58730--58842	19	6.1	19	75	13	110	46	17	23	12	1.82
58838--58882	19	2.4	19	92	0	72	8	17	26	46	1.78
59481--59551	20	3.5	20	88	3	115	19	21	18	40	1.91
59483--59569	41	2.1	41	85	4	113	24	19	19	36	1.95
60487--60578	20	4.6	20	80	10	80	28	23	18	29	1.98
60528--60654	40	3.2	40	76	7	123	30	22	18	28	1.97
60528--60619	20	4.6	20	85	5	114	28	22	20	28	1.99
63752--63786	18	1.9	18	88	0	52	54	22	2	20	1.58
63679--64175	250	2.0	250	97	0	951	33	17	14	34	1.90
64094--64376	140	2.0	140	97	0	539	27	12	15	43	1.83
64354--64507	20	8.4	20	71	17	109	35	21	19	24	1.96
64347--64497	74	2.0	74	85	2	205	35	19	19	25	1.96
64355--64491	34	3.9	34	75	16	116	36	21	19	22	1.95
66062--66179	21	5.6	21	79	0	119	22	18	36	22	1.95
66078--66184	42	2.5	42	80	1	133	23	19	37	19	1.94
66778--66828	19	2.8	18	74	11	50	19	17	19	43	1.89
66833--66901	20	3.5	20	78	4	68	15	20	26	37	1.93
68817--68884	20	3.4	20	85	0	82	42	25	17	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69304--69354	22	2.3	22	96	0	93	19	15	45	19	1.86
69528--69612	20	4.2	20	78	14	93	24	16	29	29	1.97
73078--73130	21	2.5	21	100	0	106	18	11	37	32	1.87
74419--74528	26	4.3	26	65	26	74	43	4	1	50	1.33
74423--74557	39	3.5	39	75	9	152	44	4	1	49	1.31
74411--74564	75	2.1	75	100	0	308	42	5	1	50	1.32
74411--74598	75	2.5	75	90	5	254	43	4	2	49	1.35
76716--76843	61	2.1	61	97	0	238	40	16	8	34	1.79
77930--77968	17	2.3	17	95	0	69	35	7	15	41	1.76
82674--82712	17	2.3	17	95	0	69	35	7	15	41	1.76

Tables:   1

The End!