genome.fa.s287.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000287.1 Hibiscus syriacus cultivar Beakdansim tig00000529_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111629

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4132--4171	21	1.9	21	90	10	64	37	10	0	52	1.35
6113--6203	45	2.0	46	93	2	157	26	19	26	27	1.99
8063--8127	27	2.4	28	84	2	87	26	13	4	55	1.58
10631--10669	20	2.0	20	89	0	60	20	17	17	43	1.88
12024--12117	22	4.4	21	74	23	65	74	5	18	2	1.11
12101--12127	14	1.9	14	100	0	54	77	0	22	0	0.76
12089--12129	13	3.1	13	86	6	55	73	0	24	2	0.96
14087--14345	112	2.3	111	85	4	342	28	9	19	43	1.81
14064--14347	53	5.1	57	74	13	236	28	8	18	43	1.80
14430--14521	41	2.2	42	80	1	96	27	19	19	33	1.96
14657--14756	42	2.4	41	83	5	121	28	19	21	32	1.97
14406--15327	240	3.9	239	85	4	1215	31	16	17	35	1.92
15875--15922	22	2.1	23	84	7	62	50	27	2	20	1.60
15866--15922	23	2.5	24	80	8	66	50	26	3	19	1.63
21290--21352	30	2.1	30	84	0	81	14	31	19	34	1.91
22226--22378	77	2.0	79	83	5	195	36	11	6	45	1.67
37799--37844	25	1.9	24	83	16	60	63	0	2	34	1.07
44157--44199	21	2.0	21	100	0	86	37	18	13	30	1.90
44452--44509	21	2.8	21	89	5	82	22	29	20	27	1.99
47071--47122	25	2.1	25	100	0	104	23	23	17	36	1.95
60800--61025	122	1.9	121	80	8	271	46	6	7	40	1.57
62399--62470	3	24.3	3	84	8	94	62	1	1	34	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62627--63000	73	5.1	73	91	0	604	32	19	19	28	1.96
62627--63000	147	2.6	146	91	0	613	32	19	19	28	1.96
62955--63044	44	2.0	44	97	0	171	36	21	15	26	1.93
62882--63118	117	2.0	118	90	0	377	35	19	16	28	1.94
62999--63264	73	3.6	73	91	1	424	33	19	17	28	1.95
62735--63400	264	2.5	264	96	0	1217	33	19	18	28	1.96
63219--63308	44	2.0	44	97	0	171	36	21	15	26	1.93
63146--63381	117	2.0	117	96	0	436	33	21	17	27	1.96
63263--63400	73	1.9	73	96	0	258	32	21	18	27	1.97
64004--64061	22	2.6	22	94	0	98	37	13	15	32	1.87
73184--73237	28	2.0	27	88	3	81	59	0	5	35	1.21
73743--73990	116	2.1	113	78	12	261	45	6	8	38	1.61
75346--75446	3	35.0	3	92	7	174	65	0	0	34	0.93
78836--78870	16	2.1	16	89	5	52	17	5	11	65	1.43
79173--79931	378	2.0	371	86	4	1044	30	18	16	34	1.93
83592--83647	25	2.2	25	100	0	112	17	42	16	23	1.88
89395--89480	23	3.7	23	85	0	118	26	19	22	31	1.98
89387--89510	23	5.3	24	80	7	85	25	21	21	31	1.98
95157--95213	28	2.0	28	93	0	96	28	7	33	31	1.84
98739--98789	22	2.3	23	80	10	61	29	23	1	45	1.64
106457--107092	54	11.9	54	83	4	763	29	18	19	32	1.96
106464--107071	315	1.9	316	88	2	909	29	18	19	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106793--107138	54	6.4	54	86	3	178	30	18	19	30	1.96

Tables:   1

The End!