Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002870.1 Hibiscus syriacus cultivar Beakdansim tig00005917_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81203

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4404--4463
30
2.0
30
83
9
77
45
8
13
33
1.73
9777--9805
2
14.5
2
100
0
58
48
0
0
51
1.00
9840--10012
60
2.9
60
80
5
192
35
8
15
41
1.77
10178--10205
12
2.3
12
100
0
56
64
0
0
35
0.94
15896--15929
15
2.1
17
89
10
54
50
0
0
50
1.00
15896--15939
17
2.6
18
85
7
56
47
0
2
50
1.13
16716--17297
196
3.0
196
96
1
1078
34
12
12
41
1.79
17724--17885
76
2.1
76
93
2
272
31
11
30
26
1.91
20609--20954
14
24.8
14
70
14
187
48
3
5
42
1.42
20624--20786
69
2.3
69
95
1
290
48
3
6
41
1.46
20666--20744
27
2.9
28
88
1
97
48
2
5
44
1.38
20695--20912
42
5.2
42
90
2
305
49
3
6
41
1.44
20802--20965
6
23.4
7
64
24
62
48
2
4
44
1.35
28692--28755
3
21.0
3
81
15
78
34
0
0
65
0.93
28692--28755
19
3.5
19
81
12
80
34
0
0
65
0.93
28693--28751
31
1.9
31
93
6
102
33
0
0
66
0.92
30415--30456
20
2.2
19
86
4
57
33
0
2
64
1.07
30310--30548
120
2.0
119
82
4
295
38
7
8
46
1.62
30512--30566
27
2.0
27
89
0
83
47
0
0
52
1.00
35759--35786
2
14.0
2
100
0
56
50
0
0
50
1.00
36080--36124
18
2.4
18
85
3
54
80
0
20
0
0.72
38875--38924
24
2.1
24
85
7
66
60
12
2
26
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49138--49187
24
2.1
24
85
7
66
60
12
2
26
1.43
51112--51273
54
3.0
54
93
0
270
37
16
24
22
1.94
51637--51691
22
2.5
22
84
0
74
34
14
12
38
1.84
52086--52990
113
8.0
113
92
2
1399
37
14
19
28
1.91
53036--53095
17
3.4
17
70
17
50
48
8
26
16
1.75
52921--53139
120
1.8
123
84
6
304
40
13
19
26
1.89
53325--53381
3
19.0
3
82
13
73
35
0
0
64
0.93
55035--55076
20
2.2
19
86
4
57
33
0
2
64
1.07
54931--55168
120
2.0
119
82
4
293
38
7
8
45
1.64
55134--55186
27
2.0
27
88
0
79
47
0
0
52
1.00
59860--59928
35
1.9
36
88
2
104
15
14
20
49
1.80
64353--64455
18
5.9
18
73
12
63
23
8
23
44
1.81
64763--64803
18
2.3
18
95
0
73
31
19
24
24
1.98
64639--64819
84
2.2
83
80
9
199
27
19
23
28
1.99
64771--64836
33
2.0
33
81
0
78
27
16
24
31
1.96
65964--66072
14
8.6
14
70
22
98
14
14
17
53
1.74
65982--66087
24
4.4
24
93
2
169
14
13
19
52
1.73
65961--66052
38
2.4
38
83
7
116
14
16
17
52
1.75
69460--69552
33
2.8
32
80
6
96
16
25
31
26
1.96
69779--69956
48
3.7
48
80
3
207
16
20
35
28
1.94
69925--70061
39
3.7
38
74
9
138
16
20
30
32
1.95
72996--73061
3
21.3
3
79
17
57
34
1
1
62
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73008--73060
10
5.1
10
78
17
63
33
0
1
64
1.05
74585--74625
2
22.0
2
80
14
52
48
0
0
51
1.00
74585--74629
14
3.1
15
81
9
58
46
0
0
53
1.00
74595--74631
20
2.0
20
89
10
60
43
0
0
56
0.99
80440--80482
9
4.9
9
94
5
79
76
0
23
0
0.78
80443--80517
8
9.6
8
83
13
86
78
0
20
1
0.82
80443--80524
7
10.9
7
83
8
67
79
0
19
1
0.80
80442--80524
9
8.6
9
74
19
51
79
0
19
1
0.80
80967--81028
32
1.9
32
90
0
97
41
19
17
20
1.90

Tables:   1

The End!