genome.fa.s2871.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002871.1 Hibiscus syriacus cultivar Beakdansim tig00005921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71680

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1962--1997	2	18.0	2	100	0	72	0	50	0	50	1.00
5800--5831	13	2.5	13	95	5	57	65	28	6	0	1.16
10115--10518	197	2.1	198	82	8	511	37	11	19	31	1.87
15084--15117	4	9.0	4	87	12	54	79	0	0	20	0.73
15083--15117	7	4.7	7	96	3	52	80	0	0	20	0.72
15768--15866	50	2.0	50	95	0	180	27	8	32	32	1.86
15768--15882	50	2.3	50	90	0	158	27	8	32	31	1.87
20381--20496	50	2.3	50	86	0	151	29	8	30	31	1.87
21721--21788	25	3.0	21	73	26	59	30	0	1	67	0.99
26192--26224	12	2.8	12	95	0	57	39	39	0	21	1.53
26218--26260	12	3.6	12	80	0	59	44	27	9	18	1.80
26206--26267	24	2.6	25	87	10	94	40	30	8	20	1.82
26192--26297	48	2.2	48	79	3	115	35	33	8	22	1.85
27030--27096	20	3.3	20	79	4	89	41	17	22	17	1.90
27047--27114	21	3.3	21	77	4	84	42	17	23	16	1.88
27030--27122	41	2.3	41	96	0	168	40	17	23	18	1.90
27153--27205	20	2.7	20	93	0	88	24	28	20	26	1.99
27722--27802	19	4.5	19	73	16	73	46	24	17	11	1.80
27798--27929	20	7.1	19	77	13	132	12	21	20	45	1.83
27840--27904	34	1.9	34	90	3	105	10	23	23	43	1.85
29929--30021	42	2.2	42	82	0	114	21	38	16	23	1.92
31316--31352	14	2.6	14	88	12	58	29	0	21	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31530--31680	19	8.7	19	64	21	80	15	22	20	41	1.89
31534--31660	33	3.9	32	87	8	193	14	22	19	42	1.88
31527--31659	66	2.0	66	97	0	248	16	22	19	41	1.90
35392--35449	20	2.9	20	89	0	89	37	20	22	18	1.94
35468--35535	19	3.8	19	83	12	92	14	22	16	47	1.82
37553--37619	19	3.5	19	75	4	71	37	20	23	17	1.94
37608--37665	14	3.9	14	79	16	71	48	25	17	8	1.75
37595--37670	32	2.3	33	95	2	136	47	23	19	9	1.78
37699--37756	14	3.9	14	81	16	71	10	17	22	50	1.76
37682--37772	32	2.8	33	93	3	157	12	18	20	48	1.80
37759--37811	20	2.7	20	90	0	79	15	20	24	39	1.91
38287--38331	18	2.5	18	88	0	72	13	15	44	26	1.83
39951--39994	22	2.0	22	90	0	70	20	15	43	20	1.88
40183--40276	20	4.7	20	80	2	89	23	18	24	34	1.96
40203--40280	41	1.9	41	86	0	111	21	16	21	39	1.92
40163--40277	20	5.7	20	78	5	88	23	17	23	35	1.95
40203--40298	41	2.3	41	80	3	104	20	19	21	37	1.94
41453--41496	21	2.1	21	100	0	88	40	9	13	36	1.76
41941--41996	29	1.9	29	85	0	76	48	7	16	28	1.72
44539--44616	3	26.0	3	100	0	156	33	0	0	66	0.92
47677--47758	40	2.0	40	97	0	155	32	7	7	52	1.57
49720--49805	30	2.9	29	82	6	109	36	15	9	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50653--50830	30	6.0	30	92	1	286	36	13	16	33	1.88
57810--57886	31	2.5	31	95	0	136	33	25	15	24	1.95
64010--64060	25	2.0	26	85	11	70	13	11	3	70	1.29
67720--67744	13	1.9	13	100	0	50	0	40	0	60	0.97

Tables:   1

The End!