genome.fa.s2872.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002872.1 Hibiscus syriacus cultivar Beakdansim tig00005923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67935

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1877--1911	13	2.6	14	90	4	54	28	0	25	45	1.54
2016--2079	33	1.9	33	96	0	119	45	20	23	10	1.82
2016--2082	19	3.8	19	73	18	72	46	19	22	11	1.82
2091--2217	33	3.8	33	90	0	200	12	22	18	46	1.83
2124--2237	19	6.5	19	67	20	68	14	21	20	43	1.87
4574--4626	24	2.2	24	93	0	88	39	20	15	24	1.91
5437--5528	20	4.6	20	73	2	76	39	21	18	20	1.93
5742--5829	20	4.4	20	77	5	97	40	22	20	15	1.90
5856--5919	19	3.6	19	86	14	93	14	21	18	45	1.85
5885--5941	19	2.9	19	84	2	60	17	21	21	40	1.92
6046--6082	14	2.6	14	86	0	56	48	21	0	29	1.50
7950--8016	20	3.4	20	81	2	73	38	22	22	16	1.92
7990--8080	32	2.8	33	90	5	150	48	20	18	12	1.80
8053--8103	18	2.8	18	81	3	57	43	23	19	13	1.87
8093--8186	14	5.7	18	75	19	80	11	19	22	46	1.81
8098--8186	32	2.8	32	93	3	144	11	17	22	48	1.79
8183--8225	20	2.2	20	86	0	59	20	23	20	34	1.96
8705--8749	18	2.5	18	88	0	72	13	15	44	26	1.83
10068--10126	20	3.0	20	82	0	64	45	20	18	15	1.85
10388--10430	21	2.0	22	95	4	79	18	13	46	20	1.83
10618--10669	20	2.6	20	93	0	86	25	21	28	25	1.99
10597--10735	20	6.7	20	74	11	84	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10597--10738	65	2.3	61	81	4	167	25	16	23	34	1.95
11477--11511	5	7.0	5	100	0	70	40	40	0	20	1.52
15878--15968	45	2.0	46	91	2	148	27	25	19	27	1.99
21799--21854	22	2.7	21	78	13	62	28	28	16	26	1.97
21798--21865	20	3.2	20	73	18	59	32	25	17	25	1.97
21819--21895	23	3.5	22	70	21	63	24	24	23	27	2.00
24554--24592	20	2.0	20	89	0	60	30	33	15	20	1.94
24612--24702	45	2.0	46	84	2	121	28	24	18	28	1.98
24620--24677	19	3.3	17	80	9	55	29	24	18	27	1.98
26989--27019	14	2.2	14	94	0	53	70	6	3	19	1.22
26995--27028	18	1.9	17	88	5	50	76	2	2	17	1.04
33847--33885	14	2.7	14	88	4	51	56	0	2	41	1.13
34125--34166	22	1.9	22	90	0	66	14	14	9	61	1.55
34261--34286	12	2.2	12	100	0	52	57	23	11	7	1.59
37616--37645	12	2.6	11	90	10	51	26	16	0	56	1.40
40209--40269	24	2.5	24	83	0	77	24	11	18	45	1.82
40340--40440	35	2.9	35	100	0	202	7	31	26	33	1.85
42395--42425	10	3.0	10	95	4	53	19	29	19	32	1.96
44686--44755	24	2.9	24	82	0	86	22	18	18	40	1.92
44689--44773	24	3.6	23	78	9	73	24	16	16	42	1.88
46840--47010	20	8.4	20	76	7	130	30	23	18	26	1.98
46840--46994	61	2.5	61	79	4	152	31	22	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50145--50178	18	1.9	17	88	5	50	52	26	2	17	1.58
50238--50507	140	1.9	140	97	0	513	28	14	15	42	1.86
50478--50628	20	7.8	20	80	8	179	34	21	17	25	1.96
50486--50677	74	2.6	74	85	0	251	34	22	17	25	1.96
50667--50744	20	3.9	20	89	0	111	15	17	23	43	1.87
50796--50964	67	2.5	67	82	14	177	49	16	3	30	1.62
52241--52359	21	5.7	21	71	3	87	23	16	34	25	1.95
52241--52363	42	2.9	41	80	4	129	23	17	34	24	1.95
52839--52901	20	3.2	20	86	0	81	47	23	14	14	1.80
52849--52917	20	3.5	20	83	0	75	42	26	14	17	1.87
52922--52960	19	2.0	20	90	5	62	51	20	15	12	1.76
52998--53063	20	3.3	20	79	12	73	18	21	24	36	1.95
54964--55014	20	2.5	20	93	0	84	50	23	13	11	1.74
55419--55467	22	2.3	21	83	10	64	24	16	40	18	1.90
55426--55476	22	2.3	22	93	0	84	21	15	43	19	1.88
55650--55694	20	2.2	20	100	0	90	24	20	31	24	1.98
63918--64101	64	2.9	63	83	3	217	35	19	17	26	1.94
64409--64444	12	3.0	12	91	0	63	33	5	25	36	1.79
64409--64477	24	2.8	26	83	12	85	37	5	24	31	1.79

Tables:   1

The End!