Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002874.1 Hibiscus syriacus cultivar Beakdansim tig00005928_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62274
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Found at i:11479 original size:40 final size:38
Alignment explanation
Indices: 11399--11537 Score: 133
Period size: 40 Copynumber: 3.6 Consensus size: 38
11389 ACTATATATA
* * * *
11399 TATATATATATATATTTTTAAAATAATATGTTTTCCAAAAC
1 TATAT-TATATATGTTTTCAAAA-AACATGTTTT-AAAAAC
*
11440 TATATTATATATGTTTTCAAAAAACCATTTTTTAAAAAAC
1 TATATTATATATGTTTTCAAAAAA-CATGTTTT-AAAAAC
* *
11480 TATA-TATTATATGTTTTC-AAAAATATGTTTTAAAAAT
1 TATATTA-TATATGTTTTCAAAAAACATGTTTTAAAAAC
11517 TATATTATATA--TTTTCAAAAA
1 TATATTATATATGTTTTCAAAAA
11538 CTATTATATT
Statistics
Matches: 85, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
35 5 0.06
36 4 0.05
37 13 0.15
38 8 0.09
39 9 0.11
40 41 0.48
41 5 0.06
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (38 bp):
TATATTATATATGTTTTCAAAAAACATGTTTTAAAAAC
Found at i:11516 original size:13 final size:14
Alignment explanation
Indices: 11488--11516 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11478 ACTATATATT
11488 ATATGTTTTCAAAA
1 ATATGTTTTCAAAA
11502 ATATGTTTT-AAAA
1 ATATGTTTTCAAAA
11515 AT
1 AT
11517 TATATTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (14 bp):
ATATGTTTTCAAAA
Found at i:11544 original size:20 final size:18
Alignment explanation
Indices: 11519--11565 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
11509 TTAAAAATTA
11519 TATTATATATTTTCAAAAAC
1 TATTATATATTTT--AAAAC
*
11539 TATTATAT-TTTTAAAAT
1 TATTATATATTTTAAAAC
11556 TATTATATAT
1 TATTATATAT
11566 ATTATCATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 12 0.48
18 1 0.04
19 4 0.16
20 8 0.32
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (18 bp):
TATTATATATTTTAAAAC
Found at i:12634 original size:13 final size:14
Alignment explanation
Indices: 12616--12648 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
12606 GTTTCATTCG
12616 ATTTATATAA-AAT
1 ATTTATATAATAAT
*
12629 ATTTATATAATATT
1 ATTTATATAATAAT
12643 ATTTAT
1 ATTTAT
12649 TTATCGGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTATATAATAAT
Found at i:14481 original size:39 final size:39
Alignment explanation
Indices: 14422--14577 Score: 267
Period size: 39 Copynumber: 4.0 Consensus size: 39
14412 ACATATACAC
* * * *
14422 CAGTAAGGGCTTACCCTGTGCACAAAGCAGAGGAGCATG
1 CAGTAAGGTCTTATCTTGTGCACAAAGCAGAGGAGCCTG
*
14461 CGGTAAGGTCTTATCTTGTGCACAAAGCAGAGGAGCCTG
1 CAGTAAGGTCTTATCTTGTGCACAAAGCAGAGGAGCCTG
14500 CAGTAAGGTCTTATCTTGTGCACAAAGCAGAGGAGCCTG
1 CAGTAAGGTCTTATCTTGTGCACAAAGCAGAGGAGCCTG
14539 CAGTAAGGTCTTATCTTGTGCACAAAGCAGAGGAGCCTG
1 CAGTAAGGTCTTATCTTGTGCACAAAGCAGAGGAGCCTG
14578 TGGAAAGCGG
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (39 bp):
CAGTAAGGTCTTATCTTGTGCACAAAGCAGAGGAGCCTG
Found at i:15206 original size:21 final size:21
Alignment explanation
Indices: 15182--15222 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15172 TTCCATAATC
* *
15182 AAATCCTAAAAGATTAAGCAA
1 AAATCCTAAAACACTAAGCAA
*
15203 AAATGCTAAAACACTAAGCA
1 AAATCCTAAAACACTAAGCA
15223 TTTTCGGATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.17, G:0.10, T:0.17
Consensus pattern (21 bp):
AAATCCTAAAACACTAAGCAA
Found at i:15414 original size:19 final size:19
Alignment explanation
Indices: 15379--15434 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 19
15369 CATATTGGAC
*
15379 CGGGTCG-GATCGGGCAGG
1 CGGGTCGAGTTCGGGCAGG
* * *
15397 TGGGTCGAGTTTGGGCAGA
1 CGGGTCGAGTTCGGGCAGG
*
15416 CGGGTCGGGTTCGGGCAGG
1 CGGGTCGAGTTCGGGCAGG
15435 ATCTAGAAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 6 0.21
19 23 0.79
ACGTcount: A:0.11, C:0.18, G:0.54, T:0.18
Consensus pattern (19 bp):
CGGGTCGAGTTCGGGCAGG
Found at i:19608 original size:27 final size:27
Alignment explanation
Indices: 19568--19622 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
19558 AATACTATTG
* *
19568 TGGACATGTTTATTTGTATGACTCTTA
1 TGGACATATGTATTTGTATGACTCTTA
19595 TGGACATATGTATTTGTATGACTCTTA
1 TGGACATATGTATTTGTATGACTCTTA
19622 T
1 T
19623 TTTGTATTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47
Consensus pattern (27 bp):
TGGACATATGTATTTGTATGACTCTTA
Found at i:23204 original size:20 final size:20
Alignment explanation
Indices: 23181--23221 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
23171 TAAAATCAGG
*
23181 ATAAAGAAAATAAATAAATA
1 ATAAACAAAATAAATAAATA
23201 ATAAACAAAATAAATAAATA
1 ATAAACAAAATAAATAAATA
23221 A
1 A
23222 AATGAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (20 bp):
ATAAACAAAATAAATAAATA
Found at i:23428 original size:18 final size:17
Alignment explanation
Indices: 23391--23426 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
23381 ATACATACAT
23391 ATAAATATAAAAAATAA
1 ATAAATATAAAAAATAA
23408 ATAAATGATAAAATAATAA
1 ATAAAT-ATAAAA-AATAA
23427 TATTACTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (17 bp):
ATAAATATAAAAAATAA
Found at i:23493 original size:2 final size:2
Alignment explanation
Indices: 23488--23536 Score: 89
Period size: 2 Copynumber: 24.0 Consensus size: 2
23478 CCAGGAAATA
23488 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23530 AT GAT AT
1 AT -AT AT
23537 CAAATAAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 44 0.96
3 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:25364 original size:110 final size:110
Alignment explanation
Indices: 25230--25436 Score: 342
Period size: 110 Copynumber: 1.9 Consensus size: 110
25220 AATTGGGAAA
* *
25230 TTGTTTGTTGACAGTCAGCCGCCCCTTCGTTGTGAAGTTGAGCTTGTGTTATCTCGAGTCCAATA
1 TTGTTTGTTGACAATCAGCCGCCCCTTCGTTATGAAGTTGAGCTTGTGTTATCTCGAGTCCAATA
25295 TCCTTTGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAG
66 TCCTTTGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAG
* * * * *
25340 TTGTTTGTTGACAATCAGTCGCCCCTTCGTTATGAATTTGAGCTTGTGTTGTCTTGAGTCTAATA
1 TTGTTTGTTGACAATCAGCCGCCCCTTCGTTATGAAGTTGAGCTTGTGTTATCTCGAGTCCAATA
*
25405 TCCTTTGCTGTGAAGTTGAAATTGGCTCTGAA
66 TCCTTTGCTGTGAAGTTGAAATTGACTCTGAA
25437 ATTGGGAAGC
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
110 89 1.00
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (110 bp):
TTGTTTGTTGACAATCAGCCGCCCCTTCGTTATGAAGTTGAGCTTGTGTTATCTCGAGTCCAATA
TCCTTTGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAG
Found at i:25849 original size:32 final size:32
Alignment explanation
Indices: 25784--25858 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
25774 GATTCCCTTT
* * * *
25784 GTCGTGAAGTTGAAACTGTGGGTGGCCCCTTC
1 GTCGTGAAGTTGAAACCGTGGATGACCCATTC
*
25816 GTCGTGAAGTTGAAACCGTGGATGACCTATTC
1 GTCGTGAAGTTGAAACCGTGGATGACCCATTC
* *
25848 GTTGTAAAGTT
1 GTCGTGAAGTT
25859 TGGCTTCAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (32 bp):
GTCGTGAAGTTGAAACCGTGGATGACCCATTC
Found at i:26712 original size:10 final size:9
Alignment explanation
Indices: 26697--26732 Score: 63
Period size: 9 Copynumber: 3.9 Consensus size: 9
26687 TTTATTTTGT
26697 TCTTTTTTC
1 TCTTTTTTC
26706 TCTTTTTTC
1 TCTTTTTTC
26715 TCTTTTTTC
1 TCTTTTTTC
26724 TTCTTTTTT
1 -TCTTTTTT
26733 TTGACTTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (9 bp):
TCTTTTTTC
Found at i:26725 original size:16 final size:17
Alignment explanation
Indices: 26678--26730 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
26668 CTTATTTTTC
26678 TTTTCTCTTTTTAT-TT
1 TTTTCTCTTTTTATCTT
* *
26694 TGTTCT-TTTTTCTCTT
1 TTTTCTCTTTTTATCTT
26710 TTTTCTCTTTTT-TCTT
1 TTTTCTCTTTTTATCTT
26726 CTTTT
1 -TTTT
26731 TTTTGACTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 6 0.19
16 16 0.52
17 9 0.29
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTCTCTTTTTATCTT
Found at i:26732 original size:12 final size:11
Alignment explanation
Indices: 26673--26734 Score: 51
Period size: 11 Copynumber: 5.6 Consensus size: 11
26663 CCCACCTTAT
26673 TTTTCTTTTCTC
1 TTTT-TTTTCTC
*
26685 TTTTTATTT-TG
1 TTTTT-TTTCTC
26696 TTCTTTTTTCTC
1 TT-TTTTTTCTC
26708 --TTTTTTCTC
1 TTTTTTTTCTC
26717 TTTTTTCTTCT-
1 TTTTTT-TTCTC
26728 TTTTTTT
1 TTTTTTT
26735 GACTTAAGAC
Statistics
Matches: 42, Mismatches: 2, Indels: 14
0.72 0.03 0.24
Matches are distributed among these distances:
9 9 0.21
10 1 0.02
11 17 0.40
12 15 0.36
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.81
Consensus pattern (11 bp):
TTTTTTTTCTC
Found at i:30079 original size:23 final size:23
Alignment explanation
Indices: 30046--30113 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
30036 ATTATTATAT
30046 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
30069 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* * * *
30092 TGCACTTCAGTGCAATTATACG
1 GGCACTACGGTGCAATTCTACG
30114 AGCTGTGGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:34473 original size:33 final size:33
Alignment explanation
Indices: 34435--34500 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
34425 CTATGCGAGA
34435 TTGTTGAATTTTGTAGTGAAAATTTAAAATTGT
1 TTGTTGAATTTTGTAGTGAAAATTTAAAATTGT
34468 TTGTTGAATTTTGTAGTGAAAATTTAAAATTGT
1 TTGTTGAATTTTGTAGTGAAAATTTAAAATTGT
34501 AGTTTTAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (33 bp):
TTGTTGAATTTTGTAGTGAAAATTTAAAATTGT
Found at i:50851 original size:20 final size:21
Alignment explanation
Indices: 50812--50851 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
50802 AAAATGGTGA
50812 AAATTGAAATCATCGGTAGAG
1 AAATTGAAATCATCGGTAGAG
* *
50833 AAATTGTAATGAT-GGTAGA
1 AAATTGAAATCATCGGTAGA
50852 TTAAGCGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.28
Consensus pattern (21 bp):
AAATTGAAATCATCGGTAGAG
Found at i:52910 original size:25 final size:25
Alignment explanation
Indices: 52877--52924 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
52867 AAATTAACAA
52877 AATGATTTTAATTAAATTAATATAAT
1 AATGATTTTAATTAAA-TAATATAAT
*
52903 AATG-TTTTTATTAAATAATATA
1 AATGATTTTAATTAAATAATATA
52925 TATTATAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 10 0.48
26 4 0.19
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (25 bp):
AATGATTTTAATTAAATAATATAAT
Found at i:53011 original size:23 final size:24
Alignment explanation
Indices: 52985--53035 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
52975 ATAATTATGT
*
52985 TTTTATAACATGT-TTTCT-TATAC
1 TTTTATAACACGTCTTTCTCTAT-C
53008 TTTTATAACACGTCTTTCTCTATC
1 TTTTATAACACGTCTTTCTCTATC
53032 TTTT
1 TTTT
53036 GACATGATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 12 0.48
24 10 0.40
25 3 0.12
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.57
Consensus pattern (24 bp):
TTTTATAACACGTCTTTCTCTATC
Found at i:54764 original size:21 final size:21
Alignment explanation
Indices: 54709--54766 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
54699 TATTACAAAT
*
54709 AAAC-ATATAAAATTAAATCA
1 AAACTATATAAAATGAAATCA
* *
54729 ACAACTA-AAATAAATGAAATTA
1 A-AACTATATA-AAATGAAATCA
54751 AAACTATATAAAATGA
1 AAACTATATAAAATGA
54767 TTAATTTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
20 1 0.03
21 16 0.53
22 13 0.43
ACGTcount: A:0.64, C:0.09, G:0.03, T:0.24
Consensus pattern (21 bp):
AAACTATATAAAATGAAATCA
Found at i:56036 original size:16 final size:16
Alignment explanation
Indices: 56012--56051 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
56002 ATTGGGACTG
56012 TAATAATATTTGTA-AA
1 TAATAATATTT-TATAA
*
56028 TAATTATATTTTATAA
1 TAATAATATTTTATAA
56044 TAATAATA
1 TAATAATA
56052 ATAATAGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 2 0.10
16 19 0.90
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
TAATAATATTTTATAA
Found at i:56303 original size:18 final size:18
Alignment explanation
Indices: 56280--56315 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
56270 ATCATGTAAA
*
56280 GGTTGAATAAGTTCTGTT
1 GGTTGAATAAGTTATGTT
56298 GGTTGAATAAGTTATGTT
1 GGTTGAATAAGTTATGTT
56316 CATTCTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.03, G:0.28, T:0.44
Consensus pattern (18 bp):
GGTTGAATAAGTTATGTT
Found at i:56521 original size:113 final size:113
Alignment explanation
Indices: 56320--56725 Score: 677
Period size: 113 Copynumber: 3.6 Consensus size: 113
56310 TATGTTCATT
* * *
56320 CTTCTTCATATGAGTTCTTCTCATTATGAATTTCTCTGGAAAAGTTGATCCATCGAATGATGAAT
1 CTTCTTCAGATGAGTTATTCTCATTATGAACTTCTCTGGAAAAGTTGATCCATCGAATGATGAAT
* * *
56385 TCAAAGAAAAGATTTGAATAAATTCTTCTTATTATGAATTTCTTCTTC
66 TCAAACAAAAGGTTTGAACAAATTCTTCTTATTATGAATTTCTTCTTC
*
56433 CTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGTTGATCCATCGAATGATGAAT
1 CTTCTTCAGATGAGTTATTCTCATTATGAACTTCTCTGGAAAAGTTGATCCATCGAATGATGAAT
56498 TCAAACAAAAGGTTTGAACAAATTCTTCTTATTATGAATTTCTTCTTC
66 TCAAACAAAAGGTTTGAACAAATTCTTCTTATTATGAATTTCTTCTTC
* * *
56546 CTTCTTCAGATAAGTTATTCTCATTGTGAATTTCTCTGGAAAAGTTGATCCATCGAATGATGAAT
1 CTTCTTCAGATGAGTTATTCTCATTATGAACTTCTCTGGAAAAGTTGATCCATCGAATGATGAAT
* * *
56611 TCAAACAAAAGGTTTGAACAAATTTTTCTCATTATGAATTTCTTCTTA
66 TCAAACAAAAGGTTTGAACAAATTCTTCTTATTATGAATTTCTTCTTC
* *
56659 CTTCTTCAGATGAGTTATTCTCATTATGAACTTCTCTGGAAAAGTTGACCCATCGAATGATGGAT
1 CTTCTTCAGATGAGTTATTCTCATTATGAACTTCTCTGGAAAAGTTGATCCATCGAATGATGAAT
56724 TC
66 TC
56726 GAATCTTTGC
Statistics
Matches: 276, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 276 1.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (113 bp):
CTTCTTCAGATGAGTTATTCTCATTATGAACTTCTCTGGAAAAGTTGATCCATCGAATGATGAAT
TCAAACAAAAGGTTTGAACAAATTCTTCTTATTATGAATTTCTTCTTC
Found at i:58298 original size:14 final size:14
Alignment explanation
Indices: 58275--58310 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
58265 ATTTTTTCTC
*
58275 TCTTTTTTCATTTT
1 TCTTTCTTCATTTT
58289 TCTTTCTTCATTTT
1 TCTTTCTTCATTTT
*
58303 TTTTTCTT
1 TCTTTCTT
58311 TCTTCTTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.78
Consensus pattern (14 bp):
TCTTTCTTCATTTT
Done.