Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002878.1 Hibiscus syriacus cultivar Beakdansim tig00005932_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44072

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12493--12545
19
2.7
19
79
2
52
32
16
13
37
1.88
16064--16116
24
2.2
24
89
0
79
45
28
15
11
1.80
21131--21182
26
2.1
24
82
10
61
9
23
15
51
1.72
36429--36456
14
2.0
14
100
0
56
50
28
14
7
1.69
37746--37793
23
2.1
23
84
0
60
35
10
18
35
1.85
38513--38549
18
2.1
18
89
0
56
51
10
5
32
1.60
38753--38817
23
2.8
23
90
0
94
38
18
7
35
1.80
39170--39223
23
2.5
20
75
18
54
42
18
1
37
1.61
39185--39247
23
2.7
23
90
0
90
38
19
6
36
1.77
39592--39645
23
2.5
20
75
18
54
42
18
1
37
1.61
39607--39669
23
2.7
23
90
0
90
38
19
6
36
1.77
40015--40068
23
2.5
20
75
18
54
42
18
1
37
1.61
40030--40092
23
2.7
23
90
0
90
38
19
6
36
1.77
40432--40485
23
2.5
20
75
18
54
42
18
1
37
1.61
40447--40509
23
2.7
23
90
0
90
38
19
6
36
1.77
38755--40607
429
4.4
426
96
3
3439
38
13
8
40
1.74
41872--41937
33
2.0
33
87
0
96
24
45
1
28
1.62
44015--44062
22
2.2
22
85
7
62
31
8
10
50
1.66

Tables:   1

The End!