Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002879.1 Hibiscus syriacus cultivar Beakdansim tig00005936_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 492147
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
File 2 of 3
Found at i:269173 original size:31 final size:31
Alignment explanation
Indices: 269135--269325 Score: 140
Period size: 31 Copynumber: 6.1 Consensus size: 31
269125 AGAACCTCGG
* *
269135 AAACTGTCCATAGGTCCCGAAGAACCTAGGT
1 AAACTGTCCATATGTCCCGAAGAACATAGGT
* ***
269166 AAACTGTCCATATGTTCTTTAGAACATAGGT
1 AAACTGTCCATATGTCCCGAAGAACATAGGT
*
269197 ATACTGTCCATATGTCCCGAA-AGACATAGGT
1 AAACTGTCCATATGTCCCGAAGA-ACATAGGT
**
269228 AATTTGT-CATATGTCCCGAA-AGACATAGGT
1 AAACTGTCCATATGTCCCGAAGA-ACATAGGT
* * **
269258 AATTCTATCCATATGTCTCAAAAGAA-ATAGGT
1 AA-ACTGTCCATATGTC-CCGAAGAACATAGGT
* * **
269290 AATTCTATCCATATGTCTCAAAAGAA-ATAGGT
1 AA-ACTGTCCATATGTC-CCGAAGAACATAGGT
269322 AAAC
1 AAAC
269326 CTTCGACTCT
Statistics
Matches: 136, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
30 26 0.19
31 57 0.42
32 48 0.35
33 4 0.03
34 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (31 bp):
AAACTGTCCATATGTCCCGAAGAACATAGGT
Found at i:269269 original size:62 final size:64
Alignment explanation
Indices: 269189--269323 Score: 168
Period size: 62 Copynumber: 2.2 Consensus size: 64
269179 GTTCTTTAGA
* * * * *
269189 ACATAGGT-ATACTGTCCATATGTCCCGAAAGACATAGGTAATT-TGT-CATATGTCCCGAAAG
1 ACATAGGTAATACTATCCATATGTCCCAAAAGAAATAGGTAATTCTATCCATATGTCCCAAAAG
* * *
269250 ACATAGGTAATTCTATCCATATGTCTCAAAAGAAATAGGTAATTCTATCCATATGTCTCAAAAG
1 ACATAGGTAATACTATCCATATGTCCCAAAAGAAATAGGTAATTCTATCCATATGTCCCAAAAG
*
269314 AAATAGGTAA
1 ACATAGGTAA
269324 ACCTTCGACT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
61 8 0.13
62 30 0.48
63 2 0.03
64 22 0.35
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (64 bp):
ACATAGGTAATACTATCCATATGTCCCAAAAGAAATAGGTAATTCTATCCATATGTCCCAAAAG
Found at i:269282 original size:32 final size:32
Alignment explanation
Indices: 269189--269323 Score: 168
Period size: 32 Copynumber: 4.3 Consensus size: 32
269179 GTTCTTTAGA
* * *
269189 ACATAGGT-ATACTGTCCATATGTCCCGAAAG
1 ACATAGGTAATTCTATCCATATGTCCCAAAAG
* *
269220 ACATAGGTAATT-TGT-CATATGTCCCGAAAG
1 ACATAGGTAATTCTATCCATATGTCCCAAAAG
*
269250 ACATAGGTAATTCTATCCATATGTCTCAAAAG
1 ACATAGGTAATTCTATCCATATGTCCCAAAAG
* *
269282 AAATAGGTAATTCTATCCATATGTCTCAAAAG
1 ACATAGGTAATTCTATCCATATGTCCCAAAAG
*
269314 AAATAGGTAA
1 ACATAGGTAA
269324 ACCTTCGACT
Statistics
Matches: 96, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
30 27 0.28
31 13 0.14
32 56 0.58
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (32 bp):
ACATAGGTAATTCTATCCATATGTCCCAAAAG
Found at i:275285 original size:21 final size:21
Alignment explanation
Indices: 275244--275286 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
275234 AAGTTCCATT
*
275244 TGTGCATATTATAATCATATA
1 TGTGCATATTATAATAATATA
*
275265 TGTG-ATATTTTAATAATTATA
1 TGTGCATATTATAATAA-TATA
275286 T
1 T
275287 ACAAAGTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (21 bp):
TGTGCATATTATAATAATATA
Found at i:277520 original size:19 final size:19
Alignment explanation
Indices: 277475--277520 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
277465 TACAGCAAAG
*
277475 TACATTCCATTTATTAAAA
1 TACATTCTATTTATTAAAA
277494 TACATTCTATTTATTAAAA
1 TACATTCTATTTATTAAAA
277513 TACATTCT
1 TACATTCT
277521 TAAATCACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (19 bp):
TACATTCTATTTATTAAAA
Found at i:286283 original size:29 final size:32
Alignment explanation
Indices: 286233--286303 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 32
286223 AAATATAATT
*
286233 TATAATA-ATTTTATTTTAATAAAA-TATA-A
1 TATAATATTTTTTATTTTAATAAAATTATAGA
*
286262 TAATCATATTTTTTA-TTT-ATAAAATTATAGA
1 T-ATAATATTTTTTATTTTAATAAAATTATAGA
286293 TATAATATTTT
1 TATAATATTTT
286304 AATATTAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
29 7 0.20
30 21 0.60
31 7 0.20
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (32 bp):
TATAATATTTTTTATTTTAATAAAATTATAGA
Found at i:286303 original size:30 final size:28
Alignment explanation
Indices: 286222--286313 Score: 78
Period size: 30 Copynumber: 3.0 Consensus size: 28
286212 TAAAAAATAA
286222 AAAATATAATTTATAATAATTTTATTTTAAT
1 AAAATATAA--TATAAT-ATTTTATTTTAAT
* *
286253 AAAATATAATAATCATATTTT-TTATTTAT
1 AAAATATAAT-ATAATATTTTATT-TTAAT
*
286282 AAAATTATAGATATAATATTTTAATATTAAT
1 AAAA-TATA-ATATAATATTTT-ATTTTAAT
286313 A
1 A
286314 TTTACATAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
28 2 0.04
29 14 0.28
30 17 0.34
31 16 0.32
32 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (28 bp):
AAAATATAATATAATATTTTATTTTAAT
Found at i:286678 original size:23 final size:23
Alignment explanation
Indices: 286652--286701 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
286642 ACCTATTTTA
* * *
286652 TTATATAAGTGCTACCTATTACG
1 TTATATAAGCGCTACCTAATAAG
*
286675 TTATATAAGCGCTTCCTAATAAG
1 TTATATAAGCGCTACCTAATAAG
286698 TTAT
1 TTAT
286702 TGTGTTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (23 bp):
TTATATAAGCGCTACCTAATAAG
Found at i:286811 original size:23 final size:23
Alignment explanation
Indices: 286729--286802 Score: 121
Period size: 23 Copynumber: 3.2 Consensus size: 23
286719 CCAGTAATTA
**
286729 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
*
286752 ACATATTACATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
286775 ACCTATTACATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
286798 ACCTA
1 ACCTA
286803 ATATGTTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.36
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:286846 original size:110 final size:110
Alignment explanation
Indices: 286651--286887 Score: 411
Period size: 110 Copynumber: 2.2 Consensus size: 110
286641 AACCTATTTT
* * * *
286651 ATTATATAAGTGCTACCTATTACGTTATATAAGCGCTTCCTAATAAGTTATTGTGTTTGATAATG
1 ATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATAAGTTATTGTGCTTGATAATG
*
286716 TTTCCAGTAATTAACCTATTTTATTATATAAGCGCTACATATTAC
66 TTTCCAGTAATTAACATATTTTATTATATAAGCGCTACATATTAC
*
286761 ATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATG
1 ATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATAAGTTATTGTGCTTGATAATG
*
286826 TTTCCAGTAATTAACATATTTTATTATATAAGCGCTACCTATTAC
66 TTTCCAGTAATTAACATATTTTATTATATAAGCGCTACATATTAC
286871 ATTATATAAGCGCTACC
1 ATTATATAAGCGCTACC
286888 CAAGGCCGGC
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
110 120 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.40
Consensus pattern (110 bp):
ATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATAAGTTATTGTGCTTGATAATG
TTTCCAGTAATTAACATATTTTATTATATAAGCGCTACATATTAC
Found at i:288803 original size:23 final size:23
Alignment explanation
Indices: 288773--288838 Score: 114
Period size: 23 Copynumber: 2.9 Consensus size: 23
288763 CCGGCCCTGG
288773 CGCTACCTATTACATTATATAAA
1 CGCTACCTATTACATTATATAAA
*
288796 CGCTACCTATTACATTATATAAG
1 CGCTACCTATTACATTATATAAA
*
288819 CGCTACCTATTACATCATAT
1 CGCTACCTATTACATTATAT
288839 TTTTACTTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (23 bp):
CGCTACCTATTACATTATATAAA
Found at i:290783 original size:27 final size:30
Alignment explanation
Indices: 290710--290788 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 30
290700 TTTAATTGGA
*
290710 TTTAGGGGTCAAATT-GATATTTTATATAAAT
1 TTTAGAGGTCAAATTAG-TA-TTTATATAAAT
*
290741 TTTAGAGGTTAAATTAGTATTTATA-AAA-
1 TTTAGAGGTCAAATTAGTATTTATATAAAT
290769 TTTA-AGGTCAAATTAGTATT
1 TTTAGAGGTCAAATTAGTATT
290789 ATGTCTAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
27 15 0.34
28 4 0.09
29 3 0.07
30 6 0.14
31 15 0.34
32 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (30 bp):
TTTAGAGGTCAAATTAGTATTTATATAAAT
Found at i:299138 original size:189 final size:186
Alignment explanation
Indices: 298822--299200 Score: 715
Period size: 189 Copynumber: 2.0 Consensus size: 186
298812 GTTCTTGGAC
298822 TCAGCTTCTCCGTGCCCATTCAATTTGTTCATAAAATAGTAAATTTTTATGCTTATGAAAGTTGT
1 TCAGCTTCTCCGTGCCCATTCAATTTGTTCATAAAATAGTAAATTTTTATGCTTATGAAAGTTGT
298887 AATAACTTCCAATTTGGACTGGTCTTCAAGCTTATAAGCTGCATATCTGGATCAATAATAAATGT
66 AATAACTTCCAATTTGGACTGGTCTTCAAGCTTATAAGCTGCATATCTGGATCAATAATAAATGT
298952 ATTGAGGCTGTAAGATTGAAAAGTTATATAGTTGGAAGCTACTGGAAATA-GTATT
131 ATTGAGGCTGTAAGATTGAAAAGTTATATAGTTGGAAGCTACTGGAAATATGTATT
299007 TCAGCTTCTCCGTGCACCATTCAATTTGTTCATAAAATAGTAAATTTTTATGCTTTATGAAAGTT
1 TCAGCTTCTCCGTGC-CCATTCAATTTGTTCATAAAATAGTAAATTTTTATGC-TTATGAAAGTT
299072 GTAATAACTTCCAATTTGGACTGGTCTCTTCAAGCTTATAAGCTGCATATCTGGATCAATAATAA
64 GTAATAACTTCCAATTTGGACTGG--TCTTCAAGCTTATAAGCTGCATATCTGGATCAATAATAA
299137 ATGTATTGAGGCTGTAAGATTGAAAAGTTATATAGTTGGAAGCTACTGGAAATATGTATT
127 ATGTATTGAGGCTGTAAGATTGAAAAGTTATATAGTTGGAAGCTACTGGAAATATGTATT
299197 TCAG
1 TCAG
299201 TTTTCTATGC
Statistics
Matches: 189, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
185 15 0.08
186 37 0.20
187 35 0.19
189 93 0.49
190 9 0.05
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (186 bp):
TCAGCTTCTCCGTGCCCATTCAATTTGTTCATAAAATAGTAAATTTTTATGCTTATGAAAGTTGT
AATAACTTCCAATTTGGACTGGTCTTCAAGCTTATAAGCTGCATATCTGGATCAATAATAAATGT
ATTGAGGCTGTAAGATTGAAAAGTTATATAGTTGGAAGCTACTGGAAATATGTATT
Found at i:305607 original size:15 final size:16
Alignment explanation
Indices: 305587--305644 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 16
305577 AAATATAATA
305587 TATATATAA-TAAAAT
1 TATATATAACTAAAAT
*
305602 TATATA-AACTATAAT
1 TATATATAACTAAAAT
305617 TATATTATAAACTATATAAT
1 TATA-TAT-AACTA-A-AAT
305637 TAT-TATAA
1 TATATATAA
305645 ACTATATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 2 0.06
15 15 0.43
16 2 0.06
17 2 0.06
18 8 0.23
20 6 0.17
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
TATATATAACTAAAAT
Found at i:305616 original size:20 final size:19
Alignment explanation
Indices: 305591--305663 Score: 62
Period size: 18 Copynumber: 3.8 Consensus size: 19
305581 ATAATATATA
305591 TATAATAAAATTATATAAAC
1 TATAATAAAA-TATATAAAC
* *
305611 TATAATTATAT-TATAAAC
1 TATAATAAAATATATAAAC
*
305629 TAT-AT-AATTATTATAAAC
1 TATAATAAAATA-TATAAAC
305647 TATATATATAAATATAT
1 TATA-ATA-AAATATAT
305664 TTATGTGAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
16 2 0.05
17 2 0.05
18 20 0.48
19 1 0.02
20 10 0.24
21 3 0.07
22 4 0.10
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (19 bp):
TATAATAAAATATATAAAC
Found at i:305627 original size:18 final size:18
Alignment explanation
Indices: 305604--305745 Score: 76
Period size: 18 Copynumber: 7.6 Consensus size: 18
305594 AATAAAATTA
305604 TATAAACTATAATTATAT
1 TATAAACTATAATTATAT
*
305622 TATAAACTAT-ATAATTAT
1 TATAAACTATAATTA-TAT
*
305640 TATAAACTATATATATAAAT
1 TATAAACTATA-AT-TATAT
** * *
305660 ATATTTA-TGTGAACTATA-
1 -TATAAACTAT-AATTATAT
* *
305678 TATAAACTACGTATATAAAAT
1 TATAAACTA--TA-ATTATAT
*
305699 TATAAACTATATTTATAT
1 TATAAACTATAATTATAT
*
305717 TATAAACTAT-ATAATTAT
1 TATAAACTATAATTA-TAT
*
305735 TATAAGCTATA
1 TATAAACTATA
305746 TATATAAATT
Statistics
Matches: 91, Mismatches: 20, Indels: 25
0.67 0.15 0.18
Matches are distributed among these distances:
17 9 0.10
18 50 0.55
19 6 0.07
20 11 0.12
21 15 0.16
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (18 bp):
TATAAACTATAATTATAT
Found at i:305658 original size:13 final size:13
Alignment explanation
Indices: 305640--305814 Score: 74
Period size: 13 Copynumber: 12.8 Consensus size: 13
305630 ATATAATTAT
305640 TATAAACTATATA
1 TATAAACTATATA
305653 TATAAA-TATATTTA
1 TATAAACTATA--TA
* *
305667 TGTGAAC--TATA
1 TATAAACTATATA
305678 TATAAACTACGTATA
1 TATAAACTA--TATA
* *
305693 TA-AAATTATAAA
1 TATAAACTATATA
**
305705 CTAT-ATTTATAT-
1 -TATAAACTATATA
305717 TATAAACTATATAA
1 TATAAACTATAT-A
305731 TTATTATAAGCTATATA
1 -TA-TA-AA-CTATATA
* *
305748 TATAAATTATGTTTA
1 TATAAACTA--TATA
* *
305763 TGTGAACTATATA
1 TATAAACTATATA
**
305776 TATAAACTATGCA
1 TATAAACTATATA
305789 TATAAACTATATA
1 TATAAACTATATA
305802 TGTATAAACTATA
1 --TATAAACTATA
305815 AAAAGTATAA
Statistics
Matches: 120, Mismatches: 22, Indels: 38
0.67 0.12 0.21
Matches are distributed among these distances:
11 10 0.08
12 13 0.11
13 41 0.34
14 13 0.11
15 30 0.25
16 4 0.03
17 3 0.03
18 6 0.05
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (13 bp):
TATAAACTATATA
Found at i:305715 original size:95 final size:98
Alignment explanation
Indices: 305595--305777 Score: 318
Period size: 95 Copynumber: 1.9 Consensus size: 98
305585 TATATATATA
305595 ATAAAATTATATAAACTATAATTATATTATAAACTATATAATTATTATAAACTATATATATAAA-
1 ATAAAATTATATAAACTATAATTATATTATAAACTATATAATTATTATAAACTATATATATAAAT
305659 TATATTTATGTGAACTATATATAAACTACGTAT
66 TATATTTATGTGAACTATATATAAACTACGTAT
* *
305692 ATAAAA-T-TATAAACTATATTTATATTATAAACTATATAATTATTATAAGCTATATATATAAAT
1 ATAAAATTATATAAACTATAATTATATTATAAACTATATAATTATTATAAACTATATATATAAAT
*
305755 TATGTTTATGTGAACTATATATA
66 TATATTTATGTGAACTATATATA
305778 TAAACTATGC
Statistics
Matches: 82, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
95 53 0.65
96 23 0.28
97 6 0.07
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.43
Consensus pattern (98 bp):
ATAAAATTATATAAACTATAATTATATTATAAACTATATAATTATTATAAACTATATATATAAAT
TATATTTATGTGAACTATATATAAACTACGTAT
Found at i:305829 original size:17 final size:17
Alignment explanation
Indices: 305803--305840 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
305793 AACTATATAT
305803 GTAT-AAACTATAAAAA
1 GTATAAAACTATAAAAA
305819 GTATAAAACTATAAAAA
1 GTATAAAACTATAAAAA
305836 GTATA
1 GTATA
305841 TAGTTTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.61, C:0.05, G:0.08, T:0.26
Consensus pattern (17 bp):
GTATAAAACTATAAAAA
Found at i:305880 original size:2 final size:2
Alignment explanation
Indices: 305867--305954 Score: 53
Period size: 2 Copynumber: 45.5 Consensus size: 2
305857 ATTTATATTA
* * *
305867 AT AT AGT AT AT AT AT AT AC AT AT AA ACT AT AT A- AA AT AT AGT
1 AT AT A-T AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT A-T
* * *
305909 TT AT AT GT -T AT A- AT TT AT AT -T A- AT AT A- AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
305946 AT AT AT AT A
1 AT AT AT AT A
305955 GTCTATTTAG
Statistics
Matches: 67, Mismatches: 10, Indels: 18
0.71 0.11 0.19
Matches are distributed among these distances:
1 6 0.09
2 57 0.85
3 4 0.06
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:305908 original size:64 final size:65
Alignment explanation
Indices: 305824--305954 Score: 183
Period size: 64 Copynumber: 2.0 Consensus size: 65
305814 AAAAAGTATA
* *
305824 AAACTATAAAAAGTATATAGTTTATAAAATATTATTTATATTAATATAGTATATATATATACATA
1 AAACTATAAAAAG-ATATAGTTTATAAAATATAATTTATATTAATATAATATATATATATACATA
305889 T
65 T
* *** *
305890 AAACTATATAAA-ATATAGTTTATATGTTATAATTTATATTAATATAATATATATATATATATAT
1 AAACTATAAAAAGATATAGTTTATAAAATATAATTTATATTAATATAATATATATATATACATAT
305954 A
1 A
305955 GTCTATTTAG
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 47 0.81
66 11 0.19
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (65 bp):
AAACTATAAAAAGATATAGTTTATAAAATATAATTTATATTAATATAATATATATATATACATAT
Found at i:313743 original size:21 final size:21
Alignment explanation
Indices: 313717--313761 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
313707 GATTTCTGGG
* *
313717 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
313738 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
313759 CAA
1 CAA
313762 ACGACAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:314364 original size:18 final size:18
Alignment explanation
Indices: 314341--314375 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
314331 CTAGGAGATT
314341 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
314359 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
314376 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:314461 original size:21 final size:22
Alignment explanation
Indices: 314432--314475 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
314422 GTTGTATGAT
314432 AGAAAATTAT-GAAGTTATATG
1 AGAAAATTATAGAAGTTATATG
* *
314453 AGAAGATTATAGGAGTTATATG
1 AGAAAATTATAGAAGTTATATG
314475 A
1 A
314476 AATTGAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.32
Consensus pattern (22 bp):
AGAAAATTATAGAAGTTATATG
Found at i:315428 original size:149 final size:149
Alignment explanation
Indices: 315248--315551 Score: 599
Period size: 149 Copynumber: 2.0 Consensus size: 149
315238 GAGTCGAGGG
315248 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
*
315313 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
315378 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
315397 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
315462 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
315527 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
315546 TCTACG
1 TCTACG
315552 GGGCACTTCG
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 154 1.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (149 bp):
TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:315574 original size:23 final size:23
Alignment explanation
Indices: 315530--315574 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
315520 ATCATTATAT
*
315530 GGCACTACGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTATACGG
* **
315553 GGCACTTCGGTGCGTTTATACG
1 GGCACTACGGTGCAATTATACG
315575 AGCTGTGGTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGG
Found at i:318241 original size:2 final size:2
Alignment explanation
Indices: 318236--318284 Score: 62
Period size: 2 Copynumber: 24.0 Consensus size: 2
318226 TTATATAGTT
** *
318236 TA TA TA TA TA TA TA TA TA TA TA GG TA TA TA TA TA TA TA GTT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
318279 TA TA TA
1 TA TA TA
318285 CCATGGTTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
2 39 0.98
3 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (2 bp):
TA
Found at i:318344 original size:21 final size:20
Alignment explanation
Indices: 318303--318353 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
318293 TATACATACA
*
318303 TTAGGGTTTATGTTTAAGGT
1 TTAGGGTTTATATTTAAGGT
* *
318323 TTATGGTTTAGTATTTAGGGT
1 TTAGGGTTTA-TATTTAAGGT
318344 TTAGGGTTTA
1 TTAGGGTTTA
318354 AGGTTTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.51
Consensus pattern (20 bp):
TTAGGGTTTATATTTAAGGT
Found at i:318353 original size:14 final size:13
Alignment explanation
Indices: 318303--318360 Score: 53
Period size: 14 Copynumber: 4.2 Consensus size: 13
318293 TATACATACA
*
318303 TTAGGGTTTATGT
1 TTAGGGTTTAGGT
*
318316 TTAAGGTTTATGGT
1 TTAGGGTTTA-GGT
**
318330 TTAGTATTTAGGGT
1 TTAGGGTTTA-GGT
318344 TTAGGGTTTAAGGT
1 TTAGGGTTT-AGGT
318358 TTA
1 TTA
318361 TATAAATTAT
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
13 9 0.26
14 25 0.71
15 1 0.03
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (13 bp):
TTAGGGTTTAGGT
Found at i:318360 original size:21 final size:21
Alignment explanation
Indices: 318303--318360 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
318293 TATACATACA
318303 TTAGGGTTT-ATGTTTAAGGT
1 TTAGGGTTTAATGTTTAAGGT
* * * *
318323 TTATGGTTTAGTATTTAGGGT
1 TTAGGGTTTAATGTTTAAGGT
*
318344 TTAGGGTTTAAGGTTTA
1 TTAGGGTTTAATGTTTA
318361 TATAAATTAT
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 8 0.28
21 21 0.72
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (21 bp):
TTAGGGTTTAATGTTTAAGGT
Found at i:318629 original size:19 final size:20
Alignment explanation
Indices: 318589--318633 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
318579 AATTTTTCTA
*
318589 TTCCCTCTAAGTTTCCCAAT
1 TTCCCTCTAAGATTCCCAAT
*
318609 TTCCCTCTAA-ATTCTCAAT
1 TTCCCTCTAAGATTCCCAAT
318628 TTCCCT
1 TTCCCT
318634 ATATTCTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.20, C:0.36, G:0.02, T:0.42
Consensus pattern (20 bp):
TTCCCTCTAAGATTCCCAAT
Found at i:318748 original size:2 final size:2
Alignment explanation
Indices: 318741--318777 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
318731 CACTTTGAAA
318741 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
318778 ATTAAACATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:319238 original size:2 final size:2
Alignment explanation
Indices: 319231--319279 Score: 82
Period size: 2 Copynumber: 24.5 Consensus size: 2
319221 TATGTTTAAT
319231 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CT- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
319273 TA TA TA T
1 TA TA TA T
319280 TATTCAAAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 1 0.02
2 43 0.96
3 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:319410 original size:19 final size:20
Alignment explanation
Indices: 319388--319432 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
319378 TTGAGAATAT
*
319388 AGGGAAATT-GAGAATTTAG
1 AGGGAAATTGGAAAATTTAG
*
319407 AGGGAATTTGGAAAATTTAG
1 AGGGAAATTGGAAAATTTAG
*
319427 CGGGAA
1 AGGGAA
319433 TAGAAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.40, C:0.02, G:0.33, T:0.24
Consensus pattern (20 bp):
AGGGAAATTGGAAAATTTAG
Found at i:319652 original size:17 final size:18
Alignment explanation
Indices: 319626--319666 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
319616 AACACTATGC
319626 ATAAACTATATAAATTA-
1 ATAAACTATATAAATTAT
* *
319643 ATAAAGTATATAATTTAT
1 ATAAACTATATAAATTAT
319661 ATAAAC
1 ATAAAC
319667 GGTATAGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (18 bp):
ATAAACTATATAAATTAT
Found at i:319920 original size:14 final size:14
Alignment explanation
Indices: 319903--319949 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
319893 TTATTTTTTT
319903 TATATAAATTAAAC
1 TATATAAATTAAAC
319917 TATAT-AATT----
1 TATATAAATTAAAC
319926 TATATAAATTAAAC
1 TATATAAATTAAAC
*
319940 TATATTAATT
1 TATATAAATT
319950 TTCCTTTACA
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
13 4 0.15
14 14 0.52
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATAAATTAAAC
Found at i:319928 original size:23 final size:24
Alignment explanation
Indices: 319901--319950 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
319891 TATTATTTTT
319901 TTTATATAAATTAAACTATA-TAA
1 TTTATATAAATTAAACTATATTAA
319924 TTTATATAAATTAAACTATATTAA
1 TTTATATAAATTAAACTATATTAA
319948 TTT
1 TTT
319951 TCCTTTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTATATAAATTAAACTATATTAA
Found at i:320206 original size:16 final size:16
Alignment explanation
Indices: 320185--320255 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
320175 CGGATCATTT
*
320185 ACAGGTTAGGTTAAAA
1 ACAGGTCAGGTTAAAA
320201 ACAGGTCAGGTTAAAA
1 ACAGGTCAGGTTAAAA
* * *
320217 ACATGCCAGGTTGAAA
1 ACAGGTCAGGTTAAAA
* *
320233 ACATGTCAGGTTGAAA
1 ACAGGTCAGGTTAAAA
320249 ACAGGTC
1 ACAGGTC
320256 GGGTAATACC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.21
Consensus pattern (16 bp):
ACAGGTCAGGTTAAAA
Found at i:320355 original size:31 final size:32
Alignment explanation
Indices: 320280--320360 Score: 103
Period size: 31 Copynumber: 2.5 Consensus size: 32
320270 ATTTACCAGG
320280 TCAATCTCGGGTTCAGGTTCATATTAGTCGGAT
1 TCAAT-TCGGGTTCAGGTTCATATTAGTCGGAT
* * *
320313 GCATTTCGGGTTCAGGTATCATATT-TTCGG-T
1 TCAATTCGGGTTCAGGT-TCATATTAGTCGGAT
320344 TCAATTCGGGTTCAGGT
1 TCAATTCGGGTTCAGGT
320361 CGTTTTCAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 16 0.38
32 16 0.38
33 10 0.24
ACGTcount: A:0.19, C:0.17, G:0.26, T:0.38
Consensus pattern (32 bp):
TCAATTCGGGTTCAGGTTCATATTAGTCGGAT
Found at i:321815 original size:20 final size:20
Alignment explanation
Indices: 321790--321828 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
321780 TTTGTTTCTT
321790 TTAAAAGTCAACCAATATAA
1 TTAAAAGTCAACCAATATAA
321810 TTAAAAGTCAACCAATATA
1 TTAAAAGTCAACCAATATA
321829 TTCCATCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.15, G:0.05, T:0.26
Consensus pattern (20 bp):
TTAAAAGTCAACCAATATAA
Found at i:324938 original size:31 final size:31
Alignment explanation
Indices: 324900--325024 Score: 198
Period size: 31 Copynumber: 4.0 Consensus size: 31
324890 CCCGAAGGAC
* * *
324900 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
324931 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
324962 CAGTCTATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
324993 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
325024 C
1 C
325025 CCTCGACCCT
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
31 87 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:325716 original size:21 final size:21
Alignment explanation
Indices: 325692--325736 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
325682 TTTTGTTCGT
* *
325692 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
325713 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
325734 TTG
1 TTG
325737 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:329105 original size:31 final size:31
Alignment explanation
Indices: 329067--329189 Score: 187
Period size: 31 Copynumber: 4.0 Consensus size: 31
329057 CCCGAAGGAC
* *
329067 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAT
*
329098 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAT
329129 CAGTCCATATGTCCCGAAGAACATAGGTAAAT
1 CAGTCCATATGTCCCGAAGAACATAGGT-AAT
329161 -AGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
329190 ACCCTCGACC
Statistics
Matches: 86, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
30 2 0.02
31 81 0.94
32 3 0.03
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAT
Found at i:329190 original size:31 final size:31
Alignment explanation
Indices: 329080--329190 Score: 188
Period size: 31 Copynumber: 3.6 Consensus size: 31
329070 TCCATAGATT
*
329080 CCGAAGAACCTAGGT-AATCAGTCCATATGTC
1 CCGAAGAACATAGGTAAAT-AGTCCATATGTC
*
329111 CCGAAGAACATAGGTAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAATAGTCCATATGTC
329142 CCGAAGAACATAGGTAAATAGTCCATATGTC
1 CCGAAGAACATAGGTAAATAGTCCATATGTC
329173 CCGAAGAACATAGGTAAA
1 CCGAAGAACATAGGTAAA
329191 CCCTCGACCC
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
31 74 0.97
32 2 0.03
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (31 bp):
CCGAAGAACATAGGTAAATAGTCCATATGTC
Found at i:329883 original size:21 final size:21
Alignment explanation
Indices: 329859--329903 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
329849 TTTTGTTCGT
* *
329859 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
329880 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
329901 TTG
1 TTG
329904 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:331010 original size:12 final size:12
Alignment explanation
Indices: 330993--331017 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
330983 GTCAAATAAT
330993 TTAGGCACCAAA
1 TTAGGCACCAAA
331005 TTAGGCACCAAA
1 TTAGGCACCAAA
331017 T
1 T
331018 GGTGCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.20
Consensus pattern (12 bp):
TTAGGCACCAAA
Found at i:335447 original size:12 final size:12
Alignment explanation
Indices: 335430--335454 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
335420 GTCAAATAAT
335430 TTAGGCACCAAA
1 TTAGGCACCAAA
335442 TTAGGCACCAAA
1 TTAGGCACCAAA
335454 T
1 T
335455 GGTGCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.20
Consensus pattern (12 bp):
TTAGGCACCAAA
Found at i:339210 original size:30 final size:29
Alignment explanation
Indices: 339179--339399 Score: 115
Period size: 30 Copynumber: 7.4 Consensus size: 29
339169 ACATAAATTA
* *
339179 AAAGGGCTAAATAGTAAATACATAAAGTT
1 AAAGGACTAAATAGTAAATACAGAAAGTT
* ** *
339208 AAAGGACCAAAATAACAAATACAGAAACTT
1 AAAGGA-CTAAATAGTAAATACAGAAAGTT
339238 AAAGGACTAAAATAGCTAAA-ACAGAAAGTT
1 AAAGGACT-AAATAG-TAAATACAGAAAGTT
* * * *
339268 AAATGACTAAAATAGCAAAAATAGAAAGTT
1 AAAGGACT-AAATAGTAAATACAGAAAGTT
* * * *
339298 AACA-GACTAAAATAGCAAAAAAACATAAACTT
1 AA-AGGACT-AAATAG--TAAATACAGAAAGTT
* * * * *
339330 TAAGGACCAAAATAGCAAATACAGACATTT
1 AAAGGA-CTAAATAGTAAATACAGAAAGTT
* * * * *
339360 AAAAGACTAAAATAGAAAAAATAGAAACTT
1 AAAGGACT-AAATAGTAAATACAGAAAGTT
339390 -AAGGACTAAA
1 AAAGGACTAAA
339400 ATGGTATTAA
Statistics
Matches: 149, Mismatches: 33, Indels: 21
0.73 0.16 0.10
Matches are distributed among these distances:
28 3 0.02
29 16 0.11
30 104 0.70
31 5 0.03
32 20 0.13
33 1 0.01
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (29 bp):
AAAGGACTAAATAGTAAATACAGAAAGTT
Found at i:339269 original size:60 final size:60
Alignment explanation
Indices: 339179--339401 Score: 209
Period size: 60 Copynumber: 3.7 Consensus size: 60
339169 ACATAAATTA
* * * * * *
339179 AAAGGGCT-AAATAGTAAATACATAAAGTTAAAGGACCAAAATAACAAATACAGAAACTT
1 AAAGGACTAAAATAGCAAAAACAGAAACTTAAAGGACCAAAATAGCAAATACAGAAACTT
* * * * * * *
339238 AAAGGACTAAAATAGCTAAAACAGAAAGTTAAATGACTAAAATAGCAAAAATAGAAAGTT
1 AAAGGACTAAAATAGCAAAAACAGAAACTTAAAGGACCAAAATAGCAAATACAGAAACTT
* * * *
339298 AACA-GACTAAAATAGCAAAAAAACATAAACTTTAAGGACCAAAATAGCAAATACAGACATTT
1 AA-AGGACTAAAATAGC--AAAAACAGAAACTTAAAGGACCAAAATAGCAAATACAGAAACTT
* * * *
339360 AAAAGACTAAAATAGAAAAAATAGAAACTT-AAGGACTAAAAT
1 AAAGGACTAAAATAGCAAAAACAGAAACTTAAAGGACCAAAAT
339402 GGTATTAACA
Statistics
Matches: 134, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
59 18 0.13
60 67 0.50
61 2 0.01
62 47 0.35
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (60 bp):
AAAGGACTAAAATAGCAAAAACAGAAACTTAAAGGACCAAAATAGCAAATACAGAAACTT
Found at i:339345 original size:92 final size:91
Alignment explanation
Indices: 339232--339401 Score: 243
Period size: 92 Copynumber: 1.9 Consensus size: 91
339222 ACAAATACAG
* * * *
339232 AAACTTAAAGGACTAAAATAGCTAAA-ACAGAAAGTTAAATGACTAAAATAGCAAAAATAGAAAG
1 AAACTTAAAGGACCAAAATAGC-AAATACAGAAAGTTAAAAGACTAAAATAGAAAAAATAGAAAC
339296 TTAACAGACTAAAATAGCAAAAAAACAT
65 TTAA-AGACTAAAATAGCAAAAAAACAT
* * *
339324 AAACTTTAAGGACCAAAATAGCAAATACAGACATTTAAAAGACTAAAATAGAAAAAATAGAAACT
1 AAACTTAAAGGACCAAAATAGCAAATACAGAAAGTTAAAAGACTAAAATAGAAAAAATAGAAACT
*
339389 TAAGGACTAAAAT
66 TAAAGACTAAAAT
339402 GGTATTAACA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
91 12 0.17
92 57 0.83
ACGTcount: A:0.59, C:0.11, G:0.12, T:0.18
Consensus pattern (91 bp):
AAACTTAAAGGACCAAAATAGCAAATACAGAAAGTTAAAAGACTAAAATAGAAAAAATAGAAACT
TAAAGACTAAAATAGCAAAAAAACAT
Found at i:339588 original size:23 final size:24
Alignment explanation
Indices: 339544--339588 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
339534 ACATAAATAG
*
339544 AAATGACCACACAGTAATTAAACA
1 AAATGACCACACAGTAACTAAACA
*
339568 AAAT-ACCACACAGTGACTAAA
1 AAATGACCACACAGTAACTAAA
339589 ATAAAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.53, C:0.22, G:0.09, T:0.16
Consensus pattern (24 bp):
AAATGACCACACAGTAACTAAACA
Found at i:339594 original size:24 final size:23
Alignment explanation
Indices: 339538--339596 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
339528 AAATAAACAT
*
339538 AAATAGAAATGACCACACAGTAATT
1 AAATA-AAAT-ACCACACAGTAATA
* *
339563 AAACAAAATACCACACAGTGACTA
1 AAATAAAATACCACACAGT-AATA
339587 AAATAAAATA
1 AAATAAAATA
339597 TTTACAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 10 0.34
24 15 0.52
25 4 0.14
ACGTcount: A:0.58, C:0.17, G:0.08, T:0.17
Consensus pattern (23 bp):
AAATAAAATACCACACAGTAATA
Found at i:340299 original size:22 final size:21
Alignment explanation
Indices: 340255--340301 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
340245 TTTTTTTTTC
*
340255 TTTTTATTTCGGTTCCTATTT
1 TTTTTATTTCGGTTCCTAGTT
340276 TTTTTATTTCGGTGTCACT-GTT
1 TTTTTATTTCGGT-TC-CTAGTT
340298 TTTT
1 TTTT
340302 GTTTCAGTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 13 0.57
22 8 0.35
23 2 0.09
ACGTcount: A:0.09, C:0.13, G:0.13, T:0.66
Consensus pattern (21 bp):
TTTTTATTTCGGTTCCTAGTT
Found at i:344036 original size:33 final size:33
Alignment explanation
Indices: 343999--344114 Score: 121
Period size: 33 Copynumber: 3.5 Consensus size: 33
343989 TTCGTTGGAG
* *
343999 ATGTCAATCCACTTCCTTATGTGATGAATTAAA
1 ATGTCGATCCACCTCCTTATGTGATGAATTAAA
* *
344032 ATGTCGATCCAGCTCCTCATGTGAT-AGA-T-AA
1 ATGTCGATCCACCTCCTTATGTGATGA-ATTAAA
* * * *
344063 ATGTCGATCCACCTCTTTCTGTAATGGATTTAAA
1 ATGTCGATCCACCTCCTTATGTGAT-GAATTAAA
344097 ATGTCGATCCACCTCCTT
1 ATGTCGATCCACCTCCTT
344115 CTATGATGGA
Statistics
Matches: 67, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
31 22 0.33
32 2 0.03
33 24 0.36
34 19 0.28
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (33 bp):
ATGTCGATCCACCTCCTTATGTGATGAATTAAA
Found at i:344124 original size:34 final size:33
Alignment explanation
Indices: 343999--344122 Score: 110
Period size: 34 Copynumber: 3.8 Consensus size: 33
343989 TTCGTTGGAG
* * * * *
343999 ATGTCAATCCACTTCCTTATGTGATGAATTAAA
1 ATGTCGATCCACCTCCTTCTATGATGATTTAAA
* **
344032 ATGTCGATCCAGCTCC-TC-ATG-TGATAGATAA
1 ATGTCGATCCACCTCCTTCTATGATGATTTA-AA
* * *
344063 ATGTCGATCCACCTCTTTCTGTAATGGATTTAAA
1 ATGTCGATCCACCTCCTTCTATGAT-GATTTAAA
344097 ATGTCGATCCACCTCCTTCTATGATG
1 ATGTCGATCCACCTCCTTCTATGATG
344123 GAATCGAACG
Statistics
Matches: 69, Mismatches: 17, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
30 4 0.06
31 18 0.26
32 3 0.04
33 15 0.22
34 25 0.36
35 4 0.06
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (33 bp):
ATGTCGATCCACCTCCTTCTATGATGATTTAAA
Found at i:344256 original size:45 final size:45
Alignment explanation
Indices: 344190--344931 Score: 207
Period size: 44 Copynumber: 16.7 Consensus size: 45
344180 AGTTGACGCT
* * * *
344190 GATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTC
1 GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAAAAATGTC
* * * *** *
344235 GATCCACCTCCTTTTGTGATGGAATCGAACG-AGATGTCGAATGTT
1 GATCCAACTCCTTCTGTGATGGAATCGAACGAAAAT-AAAAATGTC
* * * * *** *
344280 GATCTACCTCCTTTTGTGATAGAATCGAAC-AAAA-AGTTGACG-C
1 GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATA-AAAATGTC
* * * * *
344323 TGATCTAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTC
1 -GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAAAAATGTC
* * **** *
344369 GATCCATCTCCTTCTGTGATGGAATCGAACG-AGATGTTGATGTT
1 GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAAAAATGTC
* * * * * ** *
344413 GATCTACCTCATTCTGTGATAGAATCGAGC-AAAAGT--TGACG-C
1 GATCCAACTCCTTCTGTGATGGAATCGAACGAAAA-TAAAAATGTC
* * * * *
344455 TGATCCAACTTCTTCTGTGATGGACTTGAGCAAAAATAAAAATGTC
1 -GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAAAAATGTC
* * ***
344501 GATCCACCTCCTTCTGTGATGGAATCGAACG-AGATATTGAT-TC
1 GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAAAAATGTC
* * * * * *** *
344544 TGATCTACCTCATTCTGTGATAGAATCGAGC-AAAA-AGTTGACG-C
1 -GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATA-AAAATGTC
** * * * * *
344588 TGATCCAACTCCTTCTACGATGGATTTGAGCGAAAATAAAAATTTT
1 -GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAAAAATGTC
* ** * **** *
344634 GATCCACCTTTTTCTGTGATGGAATCGAACG-AGATGTCGAT-AC
1 GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAAAAATGTC
* * * * * *** *
344677 TGATCTACCTCATTCTGTGATAGAATCGAGC-AAAA-AGTTGACG-C
1 -GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATA-AAAATGTC
* * * * *
344721 TGATCCAACTCCTTCTGCGATGGATTTGAGCAAAAATAAAAATGTC
1 -GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAAAAATGTC
* * * ****
344767 GATCCACCTTCTTCTGTGATGGAATCGAACG-AGATGTCGATG-C
1 GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAAAAATGTC
* * * * * ** * *
344810 TGATCTACCTTCTTCTGTGATAGAATCGAGC-AAAA-AATTGACGTT
1 -GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAA-AAATGTC
* * * * *
344855 GATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATATC
1 GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAAAAATGTC
* *
344900 GATCCACCTCCTTCTGTGATGGAATCAAACGA
1 GATCCAACTCCTTCTGTGATGGAATCGAACGA
344932 GATGTCGATG
Statistics
Matches: 498, Mismatches: 165, Indels: 68
0.68 0.23 0.09
Matches are distributed among these distances:
43 32 0.06
44 249 0.50
45 209 0.42
46 8 0.02
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (45 bp):
GATCCAACTCCTTCTGTGATGGAATCGAACGAAAATAAAAATGTC
Found at i:344653 original size:133 final size:133
Alignment explanation
Indices: 344094--344983 Score: 1435
Period size: 133 Copynumber: 6.7 Consensus size: 133
344084 TAATGGATTT
* *
344094 AAAATGTCGATCCACCTCCTTCTATGATGGAATCGAACGAGATGTCGATGTTGATCTACCTCCTT
1 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGTTGATCTACCTCATT
*
344159 CTGTGATAGAATTGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAA
66 CTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAA
344224 ATA
131 ATA
* *
344227 AAAATGTCGATCCACCTCCTTTTGTGATGGAATCGAACGAGATGTCGAATGTTGATCTACCTCCT
1 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCG-ATGTTGATCTACCTCAT
* * *
344292 TTTGTGATAGAATCGAACAAAAAGTTGACGCTGATCTAACTCCTTCTGCGATGGATTTGAGCGAA
65 TCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAA
344357 AATA
130 AATA
* *
344361 AAAATGTCGATCCATCTCCTTCTGTGATGGAATCGAACGAGATGTTGATGTTGATCTACCTCATT
1 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGTTGATCTACCTCATT
* * * *
344426 CTGTGATAGAATCGAGC-AAAAGTTGACGCTGATCCAACTTCTTCTGTGATGGACTTGAGCAAAA
66 CTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAA
344490 ATA
131 ATA
* *
344493 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATATTGAT-TCTGATCTACCTCAT
1 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGT-TGATCTACCTCAT
*
344557 TCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTACGATGGATTTGAGCGAA
65 TCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAA
344622 AATA
130 AATA
* * ** **
344626 AAAATTTTGATCCACCTTTTTCTGTGATGGAATCGAACGAGATGTCGATACTGATCTACCTCATT
1 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGTTGATCTACCTCATT
*
344691 CTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCAAAA
66 CTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAA
344756 ATA
131 ATA
* *
344759 AAAATGTCGATCCACCTTCTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATCTACCTTC-T
1 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGTTGATCTACC-TCAT
* *
344823 TCTGTGATAGAATCGAGCAAAAAATTGACGTTGATCCAACTCCTTCTGCGATGGATTTGAGCGAA
65 TCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAA
344888 AATA
130 AATA
* * **
344892 AAAATATCGATCCACCTCCTTCTGTGATGGAATCAAACGAGATGTCGATGTTGATCTACCTTTTT
1 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGTTGATCTACCTCATT
*
344957 CTGTGATAGAATCGAGAAAAAAGTTGA
66 CTGTGATAGAATCGAGCAAAAAGTTGA
344984 ACAATCTCTT
Statistics
Matches: 704, Mismatches: 47, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
131 1 0.00
132 124 0.18
133 451 0.64
134 128 0.18
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (133 bp):
AAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGTTGATCTACCTCATT
CTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAA
ATA
Found at i:344841 original size:89 final size:89
Alignment explanation
Indices: 344678--344888 Score: 181
Period size: 89 Copynumber: 2.4 Consensus size: 89
344668 TGTCGATACT
* * * * * * * * *
344678 GATCTACCTCATTCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATG
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTTGATGCTGATCCACCTTCTTCTGTGATG
* * *
344743 GATTTGAGCAAAAATAAAAATGTC
66 GAATCGAGCAAAAATAAAGATGTC
* * * * * *
344767 GATCCACCTTCTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATCTACCTTCTTCTGTGATA
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTTGATGCTGATCCACCTTCTTCTGTGATG
** * *
344832 GAATCGAGCAAAAA-ATTGACGTT
66 GAATCGAGCAAAAATAAAGATGTC
* * * *
344855 GATCCAACTCCTTCTGCGATGGATTTGAGCGAAA
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAAA
344889 ATAAAAATAT
Statistics
Matches: 93, Mismatches: 29, Indels: 1
0.76 0.24 0.01
Matches are distributed among these distances:
88 31 0.33
89 62 0.67
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (89 bp):
GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTTGATGCTGATCCACCTTCTTCTGTGATG
GAATCGAGCAAAAATAAAGATGTC
Found at i:345812 original size:22 final size:22
Alignment explanation
Indices: 345786--345827 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
345776 GAACCTCTCC
345786 TTTTCTCTTTTC-TTTTCTTTCT
1 TTTTCT-TTTTCTTTTTCTTTCT
345808 TTTTCTTTTTCTTTTTCTTT
1 TTTTCTTTTTCTTTTTCTTT
345828 TCAGGTGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (22 bp):
TTTTCTTTTTCTTTTTCTTTCT
Found at i:345814 original size:6 final size:6
Alignment explanation
Indices: 345786--345828 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
345776 GAACCTCTCC
345786 TTTTCT CTTTTC- TTTTC- -TTTCT TTTTCT TTTTCT TTTTCT TTT
1 TTTTCT -TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTT
345829 CAGGTGTAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.12
5 5 0.15
6 20 0.59
7 5 0.15
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTCT
Found at i:345817 original size:16 final size:16
Alignment explanation
Indices: 345787--345829 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
345777 AACCTCTCCT
345787 TTTCTCTTTTCTTTTC
1 TTTCTCTTTTCTTTTC
345803 TTTCT-TTTTCTTTTTC
1 TTTCTCTTTTC-TTTTC
*
345819 TTTTTCTTTTC
1 TTTCTCTTTTC
345830 AGGTGTAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 5 0.21
16 14 0.58
17 5 0.21
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTCTCTTTTCTTTTC
Found at i:357866 original size:38 final size:36
Alignment explanation
Indices: 357790--357893 Score: 102
Period size: 37 Copynumber: 2.8 Consensus size: 36
357780 ATGCTTTTTA
* * *
357790 TTATTTCGAAATTAAACAAAAAAATCAAATATTATTG
1 TTATTTCGAAATAAAATAAAAAAAT-AAATATAATTG
357827 TTATTTCGAAATAAAATAAAAAAATAAAT-TGAACGTTG
1 TTATTTCGAAATAAAATAAAAAAATAAATAT-AA--TTG
* * *
357865 TTGTTTCGAAATAAAGTATAAAAACTAAA
1 TTATTTCGAAATAAAATA-AAAAAATAAA
357894 AAACTACCTT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
35 1 0.02
36 5 0.09
37 23 0.40
38 19 0.33
39 9 0.16
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (36 bp):
TTATTTCGAAATAAAATAAAAAAATAAATATAATTG
Found at i:378971 original size:21 final size:21
Alignment explanation
Indices: 378901--378970 Score: 122
Period size: 21 Copynumber: 3.3 Consensus size: 21
378891 CTATGTGCAT
378901 CGATGCACATTCAATGTGTAC
1 CGATGCACATTCAATGTGTAC
378922 CGATGCACATTCAATGTGTAC
1 CGATGCACATTCAATGTGTAC
* *
378943 TGATGCATATTCAATGTGTAC
1 CGATGCACATTCAATGTGTAC
378964 CGATGCA
1 CGATGCA
378971 TCAAGGATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (21 bp):
CGATGCACATTCAATGTGTAC
Found at i:379105 original size:64 final size:63
Alignment explanation
Indices: 379000--379160 Score: 153
Period size: 63 Copynumber: 2.5 Consensus size: 63
378990 ATTGTTCAAG
* ** *
379000 GTGTATCGATGCACATGAAGTGCATCGATGCATTAATTTAAAATAAAAACATCGAATGTCATCA
1 GTGTATCGATGCACAAGAAGTGCATCGATGCACCAACTT-AAATAAAAACATCGAATGTCATCA
* * ** * *** **
379064 GTGTATCGATGCACAAGTAGTGCATCGATGTACCCCCTTAAATATAAACATCGAATAAGATTT
1 GTGTATCGATGCACAAGAAGTGCATCGATGCACCAACTTAAATAAAAACATCGAATGTCATCA
* *
379127 CTGTATCGATGCA-TAGATAGTGCATCGATGCACC
1 GTGTATCGATGCACAAGA-AGTGCATCGATGCACC
379161 CGTCAAGGGA
Statistics
Matches: 78, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
62 2 0.03
63 45 0.58
64 31 0.40
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (63 bp):
GTGTATCGATGCACAAGAAGTGCATCGATGCACCAACTTAAATAAAAACATCGAATGTCATCA
Found at i:379856 original size:23 final size:23
Alignment explanation
Indices: 379803--379863 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
379793 CAATCTTATA
*
379803 TGGCACTACGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
* *
379826 CGGCACTTCGGTGCAATTCTATG
1 TGGCACTTCGGTGCAATTCTACG
*
379849 TGGCACTTCGTTGCA
1 TGGCACTTCGGTGCA
379864 TTTATACGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.18, C:0.26, G:0.26, T:0.30
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:382150 original size:22 final size:23
Alignment explanation
Indices: 382122--382174 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 23
382112 TAGTAATATG
382122 AAATAAAAT-AATATAATAAA-CA
1 AAATAAAATAAATAT-ATAAACCA
382144 AAAT-AAATAAATATATAAACCA
1 AAATAAAATAAATATATAAACCA
382166 AATATAAAA
1 AA-ATAAAA
382175 GTATACATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 9 0.33
22 13 0.48
23 2 0.07
24 3 0.11
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.23
Consensus pattern (23 bp):
AAATAAAATAAATATATAAACCA
Found at i:382422 original size:40 final size:38
Alignment explanation
Indices: 382336--382422 Score: 86
Period size: 40 Copynumber: 2.2 Consensus size: 38
382326 AAAAAAAAGT
* * *
382336 ATATATATATAAATAATAAATATAGTATTAATAACCAA
1 ATATATAAATAAATAAAAAATATAGTATTAATAACAAA
*
382374 ATGAATATAAATAAATAAAAAATATATGTA-TATATAATAATA
1 AT--ATATAAATAAATAAAAAATATA-GTATTA-ATAACAA-A
382416 ATATATA
1 ATATATA
382423 GTGTAAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
38 2 0.05
40 27 0.68
41 8 0.20
42 3 0.08
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (38 bp):
ATATATAAATAAATAAAAAATATAGTATTAATAACAAA
Found at i:382457 original size:63 final size:61
Alignment explanation
Indices: 382323--382472 Score: 149
Period size: 63 Copynumber: 2.4 Consensus size: 61
382313 TAAGTAAAAT
* * * *
382323 ATTAAAAAAAAGTATATATATATA-AATAATAAATATAGTATTAATAACCAAATGAATATAA
1 ATTAAAAAAAA-TATATGTATATATAATAATAAATATAGTATAAAAAACCAAATGAAAATAA
* * * * *
382384 ATAAATAAAAAATATATGTATATATAATAATAATATATAGTGTAAAAAAATCAATTGAAAATTA
1 ATTAA-AAAAAATATATGTATATATAATAATAA-ATATAGTAT-AAAAAACCAAATGAAAATAA
* * *
382448 TTTAAAAAAAACATACGTATATATA
1 ATTAAAAAAAATATATGTATATATA
382473 TTTATATAAT
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
61 15 0.21
62 14 0.19
63 26 0.36
64 17 0.24
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (61 bp):
ATTAAAAAAAATATATGTATATATAATAATAAATATAGTATAAAAAACCAAATGAAAATAA
Found at i:382936 original size:37 final size:37
Alignment explanation
Indices: 382895--382999 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
382885 GTGCTTGTGG
* *
382895 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCATAGTAGAACTCT
* ** * *
382932 ATCCTATTTTTAGGAGTTTGAATCCTAACAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCATAGTAGAACTCT
382969 ATCCTATTTTTAGGAGTTTGAATCATAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCATAGTAG
383000 GACGAAAAGG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCATAGTAGAACTCT
Found at i:383935 original size:106 final size:105
Alignment explanation
Indices: 383730--384998 Score: 1809
Period size: 106 Copynumber: 12.0 Consensus size: 105
383720 GCATTGTTCT
* * * *
383730 GAGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGACTCT-AAA-T-GAA-AT-TTTGTTGACAA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGAAGTTGTTTATTGACAA
* * * * *
383789 TCAGCCG-CCCATTCGTCGTTAAGTTGAGCTTGTGTTGTCTTG
65 CCAGCGGTCCC-TTCGTCGTGAAGTTGAACTTGCGTTGTC-TG
* * *
383831 G-GTCCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTAGGAAGTTGTTTATTAACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTATTGACAA
* * * *
383895 CCAGCGGTCCCTTTGTCGTGAAGTTGTACTTGTGTTGTCTT
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
383936 GAGTCCAATATCCTACGCTGTGAATTTGAAATTGGCTCTGAAATTAGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTATTGACAA
* * *
384001 TCAGCGGTCCCTTTGTTGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
384042 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAGTTGTTTATTGACAA
* *
384107 CCAACGGTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
384148 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTATTGACAA
*
384213 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
** *
384254 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAACTATTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGG-AAGTTGTTTATTGACAA
*
384319 CCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
384360 GAGTCCAATATCCTTTGTTGTAAAGTTGAAATTGGCTTTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAGTTGTTTATTGACAA
*
384425 CCAGCGGTCCATTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
384466 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTATTGACAA
* *
384531 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
384572 GAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTATTGACAA
384637 CCAGCGGTCCCTTC-TCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
384677 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTATTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAGTTGTTTATTGACAA
* * *
384742 CCAGCAGTCCCTTCATTGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
384783 GAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTATTGACAA
384848 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
384889 AAGTCAAATAACCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAGTTGTTTATTGACAA
** * * *
384954 CCAGTTGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
384995 GAGT
1 GAGT
384999 GGCACGTTAT
Statistics
Matches: 1054, Mismatches: 96, Indels: 31
0.89 0.08 0.03
Matches are distributed among these distances:
100 31 0.03
101 5 0.00
102 1 0.00
104 4 0.00
105 104 0.10
106 902 0.86
107 7 0.01
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAGTTGTTTATTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:385828 original size:22 final size:22
Alignment explanation
Indices: 385802--385878 Score: 136
Period size: 22 Copynumber: 3.5 Consensus size: 22
385792 TTATGTTTGG
385802 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
385824 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
385846 TCATAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
385868 TCAACGGTTTG
1 TCAAAGGTTTG
385879 ACGGGGTAGC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.21, C:0.14, G:0.27, T:0.38
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:386518 original size:47 final size:47
Alignment explanation
Indices: 386466--386556 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 47
386456 GCTTTTTGTC
* *
386466 CTTTTTCT-TTTGATTTTTGCTTCTTTTCTTTCTTGTTCTTGATTCT
1 CTTTTTTTATTTGATTTTTGCTTCTTTGCTTTCTTGTTCTTGATTCT
* *
386512 CTTTTTTTATTTGTTTTTTGCTTCTTTGCTTTTTTGTTCTTGATT
1 CTTTTTTTATTTGATTTTTGCTTCTTTGCTTTCTTGTTCTTGATT
386557 GGATCTTCGT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 7 0.17
47 33 0.82
ACGTcount: A:0.04, C:0.14, G:0.10, T:0.71
Consensus pattern (47 bp):
CTTTTTTTATTTGATTTTTGCTTCTTTGCTTTCTTGTTCTTGATTCT
Found at i:386536 original size:25 final size:23
Alignment explanation
Indices: 386466--386549 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
386456 GCTTTTTGTC
*
386466 CTTTTTCTTTTGATTTTTGCTTCT
1 CTTTTTTTTTTG-TTTTTGCTTCT
* * * *
386490 -TTTCTTTCTTGTTCTTGATTCT
1 CTTTTTTTTTTGTTTTTGCTTCT
386512 CTTTTTTTATTTGTTTTTTGCTTCT
1 CTTTTTTT-TTTG-TTTTTGCTTCT
**
386537 -TTGCTTTTTTGTT
1 CTTTTTTTTTTGTT
386550 CTTGATTGGA
Statistics
Matches: 46, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
22 11 0.24
23 18 0.39
24 8 0.17
25 9 0.20
ACGTcount: A:0.04, C:0.14, G:0.10, T:0.73
Consensus pattern (23 bp):
CTTTTTTTTTTGTTTTTGCTTCT
Found at i:386551 original size:15 final size:15
Alignment explanation
Indices: 386479--386552 Score: 53
Period size: 15 Copynumber: 4.7 Consensus size: 15
386469 TTTCTTTTGA
*
386479 TTTTTGCTTCTTTTCT
1 TTTTTG-TTCTTTGCT
* *
386495 TTCTTGTTCTTGATTCT
1 TTTTTGTTCTT--TGCT
*
386512 CTTTTT-TTATTTG-T
1 -TTTTTGTTCTTTGCT
386526 TTTTTGCTTCTTTGCT
1 TTTTTG-TTCTTTGCT
386542 TTTTTGTTCTT
1 TTTTTGTTCTT
386553 GATTGGATCT
Statistics
Matches: 47, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
13 5 0.11
14 1 0.02
15 17 0.36
16 12 0.26
17 8 0.17
18 4 0.09
ACGTcount: A:0.03, C:0.15, G:0.09, T:0.73
Consensus pattern (15 bp):
TTTTTGTTCTTTGCT
Found at i:391070 original size:2 final size:2
Alignment explanation
Indices: 391063--391089 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
391053 TGAAATATTA
391063 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
391090 AATGAGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:391289 original size:2 final size:2
Alignment explanation
Indices: 391282--391320 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
391272 AATAATTACA
391282 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
391321 GTAATAATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:391395 original size:19 final size:18
Alignment explanation
Indices: 391344--391397 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
391334 TATAAGTAAA
*
391344 ATATTAAAAAAAGTATATAT
1 ATATT-AAAAAA-TAAATAT
*
391364 ATATATAATAAATAAATAT
1 ATAT-TAAAAAATAAATAT
391383 ACTATTAAAAAATAA
1 A-TATTAAAAAATAA
391398 CCAAATGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 16 0.55
20 12 0.41
21 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (18 bp):
ATATTAAAAAATAAATAT
Found at i:391962 original size:37 final size:36
Alignment explanation
Indices: 391921--392024 Score: 127
Period size: 36 Copynumber: 2.8 Consensus size: 36
391911 GTGCTTGTGG
* *
391921 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTAT-TTTAGGAGTTTGAATCCTAGTAGAACTCT
** * *
391958 ATCCTATTTTAGGAGTTTGAATCCTAACAAAATTCT
1 ATCCTATTTTAGGAGTTTGAATCCTAGTAGAACTCT
*
391994 ATCATATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTA-TTTTAGGAGTTTGAATCCTAGTAG
392025 GACGAAAATG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
36 28 0.50
37 28 0.50
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (36 bp):
ATCCTATTTTAGGAGTTTGAATCCTAGTAGAACTCT
Found at i:394053 original size:24 final size:24
Alignment explanation
Indices: 394002--394056 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
393992 ATCTGATTTT
* * *
394002 TGTTCTGATTTCTGAGCTGGATTA
1 TGTTCTGATATCTGAGATGAATTA
* *
394026 TGTTCTGATATCTGATATGAATTC
1 TGTTCTGATATCTGAGATGAATTA
394050 TGTTCTG
1 TGTTCTG
394057 CTTTTTTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.18, C:0.13, G:0.22, T:0.47
Consensus pattern (24 bp):
TGTTCTGATATCTGAGATGAATTA
Found at i:396614 original size:18 final size:19
Alignment explanation
Indices: 396591--396632 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
396581 TTTCGTGCAT
*
396591 TGTTATATATGA-GCTATG
1 TGTTATATATGATACTATG
*
396609 TGTTATATATTATACTATG
1 TGTTATATATGATACTATG
396628 TGTTA
1 TGTTA
396633 CATGATCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.29, C:0.05, G:0.17, T:0.50
Consensus pattern (19 bp):
TGTTATATATGATACTATG
Found at i:396968 original size:22 final size:23
Alignment explanation
Indices: 396936--396993 Score: 91
Period size: 22 Copynumber: 2.6 Consensus size: 23
396926 AGTCGTGGGT
396936 TCTACGCGGTCCTTCGGGACA-A
1 TCTACGCGGTCCTTCGGGACATA
* *
396958 TCTACGTGGTCCTTCGGGACATT
1 TCTACGCGGTCCTTCGGGACATA
396981 TCTACGCGGTCCT
1 TCTACGCGGTCCT
396994 ACTGGATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 20 0.62
23 12 0.38
ACGTcount: A:0.14, C:0.31, G:0.26, T:0.29
Consensus pattern (23 bp):
TCTACGCGGTCCTTCGGGACATA
Found at i:397056 original size:24 final size:24
Alignment explanation
Indices: 397024--397078 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
397014 CTTTCAAGAT
* * *
397024 ATTTCTATGTGGCACTTCGGTATA
1 ATTTATATGTGACACTTCGGTACA
*
397048 ATTTATATGTGACACTTCGGTGCA
1 ATTTATATGTGACACTTCGGTACA
397072 ATTTATA
1 ATTTATA
397079 CGAGCTGTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (24 bp):
ATTTATATGTGACACTTCGGTACA
Found at i:397193 original size:6 final size:6
Alignment explanation
Indices: 397182--397251 Score: 68
Period size: 6 Copynumber: 11.7 Consensus size: 6
397172 TAATGAACTG
* * * **
397182 TGATAA TGATAA TTATAG TGACAA TGATAA TGATAA TGATGT TGATAA
1 TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA
* * *
397230 TGATAT TGATGA TGATGA TGAT
1 TGATAA TGATAA TGATAA TGAT
397252 CATAATGATG
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 51 1.00
ACGTcount: A:0.40, C:0.01, G:0.21, T:0.37
Consensus pattern (6 bp):
TGATAA
Found at i:397227 original size:18 final size:18
Alignment explanation
Indices: 397182--397263 Score: 74
Period size: 18 Copynumber: 4.6 Consensus size: 18
397172 TAATGAACTG
* * *
397182 TGATAATGATAATTATAG
1 TGATGATGATAATGATAA
**
397200 TGACAATGATAATGATAA
1 TGATGATGATAATGATAA
* *
397218 TGATGTTGATAATGATAT
1 TGATGATGATAATGATAA
* *
397236 TGATGATGATGATGATCA
1 TGATGATGATAATGATAA
*
397254 TAATGATGAT
1 TGATGATGAT
397264 GATGTTGATG
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (18 bp):
TGATGATGATAATGATAA
Found at i:397265 original size:6 final size:6
Alignment explanation
Indices: 397205--397284 Score: 63
Period size: 6 Copynumber: 13.3 Consensus size: 6
397195 TATAGTGACA
* * * * *
397205 ATGATA ATGATA ATGATG TTGATA ATGAT- ATTGATG ATGATG ATGATC
1 ATGATG ATGATG ATGATG ATGATG ATGATG A-TGATG ATGATG ATGATG
* * * *
397253 ATAATG ATGATG ATGTTG ATGTTG GTGATG AT
1 ATGATG ATGATG ATGATG ATGATG ATGATG AT
397285 ATATATATAT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
5 1 0.02
6 58 0.97
7 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.26, T:0.39
Consensus pattern (6 bp):
ATGATG
Found at i:397273 original size:12 final size:12
Alignment explanation
Indices: 397182--397266 Score: 64
Period size: 12 Copynumber: 6.8 Consensus size: 12
397172 TAATGAACTG
*
397182 TGATAATGATAA
1 TGATGATGATAA
* *
397194 TTAT-AGTGACAA
1 TGATGA-TGATAA
*
397206 TGATAATGATAA
1 TGATGATGATAA
*
397218 TGATGTTGATAA
1 TGATGATGATAA
*
397230 TGATATTGATGATGA
1 TG--A-TGATGATAA
*
397245 TGATGATCATAA
1 TGATGATGATAA
397257 TGATGATGAT
1 TGATGATGAT
397267 GTTGATGTTG
Statistics
Matches: 57, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
11 1 0.02
12 44 0.77
13 2 0.04
14 1 0.02
15 9 0.16
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.36
Consensus pattern (12 bp):
TGATGATGATAA
Found at i:399514 original size:16 final size:15
Alignment explanation
Indices: 399493--399544 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
399483 TATAAGATCT
399493 ATGTGACCATATGAGA
1 ATGTGACCA-ATGAGA
*
399509 ATGTGA-C-ATGAGCT
1 ATGTGACCAATGAG-A
399523 ATGTGACCACATGAGA
1 ATGTGACCA-ATGAGA
399539 ATGTGA
1 ATGTGA
399545 AATGAGATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
13 5 0.17
14 6 0.20
15 2 0.07
16 12 0.40
17 5 0.17
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (15 bp):
ATGTGACCAATGAGA
Found at i:399550 original size:30 final size:30
Alignment explanation
Indices: 399491--399550 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
399481 GTTATAAGAT
* *
399491 CTATGTGACCATATGAGAATGTGACATGAG
1 CTATGTGACCACATGAGAATGTGAAATGAG
399521 CTATGTGACCACATGAGAATGTGAAATGAG
1 CTATGTGACCACATGAGAATGTGAAATGAG
399551 ATTATATGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (30 bp):
CTATGTGACCACATGAGAATGTGAAATGAG
Found at i:403568 original size:43 final size:42
Alignment explanation
Indices: 403505--403765 Score: 301
Period size: 43 Copynumber: 6.1 Consensus size: 42
403495 AACAAAAAAT
* * *
403505 GCCGCAATAGGTCAAGATCTATCA-CGTCGTTTTTAGAACAAAC
1 GCCGCAAAAGGTC-AGATCTAT-AGCGGCGTTTTTGGAACAAAC
* * * *
403548 GCCGCAAAGGGTCGATATCTATAGCGGCATTTTTGAAACAAAC
1 GCCGCAAAAGGTC-AGATCTATAGCGGCGTTTTTGGAACAAAC
403591 GCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAGACAAAC
1 GCCGCAAAAGGTC-AGATCTATAGCGGCGTTTTTGGA-ACAAAC
* * *
403635 GCCACAATAGGTCAGATCTATAGCGGCGTTTTTGGAACAAAT
1 GCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGGAACAAAC
* * *
403677 GCCGTAAAAGGTCAGATCTATAACTGCGTTTTTGGAACAAAC
1 GCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGGAACAAAC
* ** *
403719 GCCGCAAAAAGTCAGATCTATAGATGCGTTTTT-TATACAAAC
1 GCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGGA-ACAAAC
403761 GCCGC
1 GCCGC
403766 GAACTAAAAC
Statistics
Matches: 189, Mismatches: 26, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
41 1 0.01
42 82 0.43
43 89 0.47
44 17 0.09
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (42 bp):
GCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGGAACAAAC
Found at i:403897 original size:27 final size:27
Alignment explanation
Indices: 403845--403899 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
403835 CATTATCAAA
* **
403845 TAAACTTGACATCCATAACATCAAACT
1 TAAACTTGAAATCCATAACAAAAAACT
*
403872 TAAACTTGAAATTCATAACAAAAAACT
1 TAAACTTGAAATCCATAACAAAAAACT
403899 T
1 T
403900 GAAATTCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (27 bp):
TAAACTTGAAATCCATAACAAAAAACT
Found at i:407691 original size:42 final size:42
Alignment explanation
Indices: 407620--407758 Score: 199
Period size: 42 Copynumber: 3.3 Consensus size: 42
407610 ATCACGCTAA
* *
407620 TTTAGTGGCGTTTT-TGTACAAACGCCGCTAAATACTCGTGC
1 TTTAGTGGCGTTTTAAGCACAAACGCCGCTAAATACTCGTGC
*
407661 TTTAGCGGCGTTTTAAGCACAAACGCCGCTAAATACTCGTGC
1 TTTAGTGGCGTTTTAAGCACAAACGCCGCTAAATACTCGTGC
* * * *
407703 TTTAGTGGCATTTTAAGCACAAACGTCGCTAAATACTCATAC
1 TTTAGTGGCGTTTTAAGCACAAACGCCGCTAAATACTCGTGC
*
407745 TTTCGTGGCGTTTT
1 TTTAGTGGCGTTTT
407759 TTATATAAGT
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
41 13 0.15
42 74 0.85
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (42 bp):
TTTAGTGGCGTTTTAAGCACAAACGCCGCTAAATACTCGTGC
Found at i:412308 original size:37 final size:37
Alignment explanation
Indices: 412235--412309 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 37
412225 GTTGGAAAAT
* * *
412235 ATTTATATATTTTCTTTATAAAATTTAAATTCATAAA
1 ATTTATATATTTTCTTTACAAAATTGAAAATCATAAA
*
412272 ATTTATATAATTTTTTTTACAAAATTGAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTACAAAATTGAAAATCATAAA
412309 A
1 A
412310 AAGTTTAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 14 0.42
38 19 0.58
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (37 bp):
ATTTATATATTTTCTTTACAAAATTGAAAATCATAAA
Found at i:413524 original size:3 final size:3
Alignment explanation
Indices: 413518--413605 Score: 160
Period size: 3 Copynumber: 29.7 Consensus size: 3
413508 TTTTTACCCA
413518 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
413566 TAT TAT TAT TAT TA- TAT TAT TAT CAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
413606 AATATATTAA
Statistics
Matches: 82, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
2 2 0.02
3 80 0.98
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:414072 original size:23 final size:23
Alignment explanation
Indices: 414046--414089 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
414036 CCCGAACCTG
*
414046 AAAAAAAAGGA-GAGACAGAGACA
1 AAAAAAAAAGAGGA-ACAGAGACA
414069 AAAAAAAAAGAGGAACAGAGA
1 AAAAAAAAAGAGGAACAGAGA
414090 GAAAGATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.68, C:0.07, G:0.25, T:0.00
Consensus pattern (23 bp):
AAAAAAAAAGAGGAACAGAGACA
Found at i:414080 original size:21 final size:24
Alignment explanation
Indices: 414046--414089 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
414036 CCCGAACCTG
*
414046 AAAAAAAAGGAGA-G-ACAGAGAC
1 AAAAAAAAGAAGAGGAACAGAGAC
414068 AAAAAAAA-AAGAGGAACAGAGA
1 AAAAAAAAGAAGAGGAACAGAGA
414090 GAAAGATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 3 0.16
22 9 0.47
23 7 0.37
ACGTcount: A:0.68, C:0.07, G:0.25, T:0.00
Consensus pattern (24 bp):
AAAAAAAAGAAGAGGAACAGAGAC
Found at i:415039 original size:14 final size:15
Alignment explanation
Indices: 415017--415045 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
415007 TATAATAAAT
415017 ATAATATTATTTTAA
1 ATAATATTATTTTAA
415032 ATAA-ATTATTTTAA
1 ATAATATTATTTTAA
415046 TATTTAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAATATTATTTTAA
Found at i:426809 original size:23 final size:19
Alignment explanation
Indices: 426763--426799 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
426753 GTTCATTTTA
426763 TTTG-AAATTCAATTTATT
1 TTTGAAAATTCAATTTATT
426781 TTTGAAAATTCAATTTATT
1 TTTGAAAATTCAATTTATT
426800 CTTCTATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (19 bp):
TTTGAAAATTCAATTTATT
Found at i:427700 original size:83 final size:83
Alignment explanation
Indices: 427561--428033 Score: 786
Period size: 83 Copynumber: 5.7 Consensus size: 83
427551 CATTAACTGA
* * *
427561 AAGATGAATTTGC-CAATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTTTGACAG
1 AAGATGAATGTGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAG
427625 AACCAATCATTGAATTTGG
65 AACCAATCATTGAATTTGG
*
427644 AAGATGAATGTGCTCATAGAATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
427709 ACCAATCATTGAATTTGG
66 ACCAATCATTGAATTTGG
* * *
427727 AAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGTTTGACAGA
1 AAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
* *
427792 ACAAATCATTGAATTTAG
66 ACCAATCATTGAATTTGG
* ** *
427810 AAAATGAATGTTTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGGTTGGACAGA
1 AAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
427875 ACCAATCATTGAATTTGG
66 ACCAATCATTGAATTTGG
*
427893 AAGATGAATGTGCTCATAGAATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
427958 ACCAATCATTGAATTTGG
66 ACCAATCATTGAATTTGG
* *
427976 AAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGTT
1 AAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT
428034 TGGTAAGAAC
Statistics
Matches: 364, Mismatches: 25, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
83 363 1.00
84 1 0.00
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (83 bp):
AAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
ACCAATCATTGAATTTGG
Found at i:428014 original size:249 final size:249
Alignment explanation
Indices: 427576--428035 Score: 893
Period size: 249 Copynumber: 1.8 Consensus size: 249
427566 GAATTTGCCA
* *
427576 ATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTTTGACAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTAATCTGGTTGGACAGAACCAATCATTGAATT
427641 TGGAAGATGAATGTGCTCATAGAATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGAC
66 TGGAAGATGAATGTGCTCATAGAATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGAC
427706 AGAACCAATCATTGAATTTGGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGT
131 AGAACCAATCATTGAATTTGGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGT
427771 TATTTGATCTGGTTTGACAGAACAAATCATTGAATTTAGAAAATGAATGTTTTC
196 TATTTGATCTGGTTTGACAGAACAAATCATTGAATTTAGAAAATGAATGTTTTC
*
427825 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGGTTGGACAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTAATCTGGTTGGACAGAACCAATCATTGAATT
427890 TGGAAGATGAATGTGCTCATAGAATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGAC
66 TGGAAGATGAATGTGCTCATAGAATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGAC
427955 AGAACCAATCATTGAATTTGGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGT
131 AGAACCAATCATTGAATTTGGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGT
428020 TATTTGATCTGGTTTG
196 TATTTGATCTGGTTTG
428036 GTAAGAACTA
Statistics
Matches: 208, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
249 208 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.38
Consensus pattern (249 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTAATCTGGTTGGACAGAACCAATCATTGAATT
TGGAAGATGAATGTGCTCATAGAATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGAC
AGAACCAATCATTGAATTTGGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGT
TATTTGATCTGGTTTGACAGAACAAATCATTGAATTTAGAAAATGAATGTTTTC
Found at i:428973 original size:113 final size:113
Alignment explanation
Indices: 428792--429759 Score: 1775
Period size: 113 Copynumber: 8.6 Consensus size: 113
428782 ATTGACATTT
428792 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
428857 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
66 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
428905 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
428970 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
66 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
429018 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
*
429083 ATTTGTTCAACCTTTTGTCTAAATTCATCACTTGATGGATTA-TTTTG
66 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
429130 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
429195 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTA-TTTTG
66 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
429242 CCAGAGAAGGTTCATAATGAGAAG-ACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
429306 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
66 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
429354 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
429419 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
66 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
429467 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
429532 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
66 ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
*
429580 CCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
* * * * *
429645 ATTTGTTCAACCTTTT-TGCTCAAATCTATTACTTGATGGGTTATTTTTT
66 ATTTGTTCAACCTTTTGT-CTGAATTC-ATCACTTGATGGATTATTTTTG
* * **
429694 TCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAATAAG-AGAAGGTTCATAATGAGAAG
1 CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAA-GTTCATAATGAGAAG
429758 AA
65 AA
429760 CTCATCAAAA
Statistics
Matches: 839, Mismatches: 11, Indels: 9
0.98 0.01 0.01
Matches are distributed among these distances:
111 82 0.10
112 170 0.20
113 510 0.61
114 77 0.09
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (113 bp):
CCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
ATTTGTTCAACCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTG
Found at i:430019 original size:3 final size:3
Alignment explanation
Indices: 430013--430074 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
430003 TTTTTACCCA
430013 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
430061 TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA
430075 AATATATATT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:432544 original size:12 final size:12
Alignment explanation
Indices: 432527--432577 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
432517 TTCAAAGAGG
432527 TTTTATATTTAA
1 TTTTATATTTAA
432539 TTTTATA-TTATA
1 TTTTATATTTA-A
*
432551 TTTGAT-TTTAA
1 TTTTATATTTAA
432562 TTTTA-ATATTAA
1 TTTTATAT-TTAA
432574 TTTT
1 TTTT
432578 GTAAATAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
11 9 0.27
12 24 0.73
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (12 bp):
TTTTATATTTAA
Found at i:432635 original size:12 final size:12
Alignment explanation
Indices: 432535--432692 Score: 94
Period size: 12 Copynumber: 12.8 Consensus size: 12
432525 GGTTTTATAT
432535 TTAATTTT-ATA
1 TTAATTTTAATA
* *
432546 TT-ATATTTGATT
1 TTAAT-TTTAATA
432558 TTAATTTTAATA
1 TTAATTTTAATA
432570 TTAATTTTGTAA-A
1 TTAA-TTT-TAATA
* *
432583 -TAAATTAAATA
1 TTAATTTTAATA
432594 TTAATTTTTAATA
1 TTAA-TTTTAATA
*
432607 TTATATTATAGATA
1 TTA-ATTTTA-ATA
432621 TTAATTTTAATA
1 TTAATTTTAATA
432633 TTAATTTTTTAA-A
1 TTAA--TTTTAATA
* *
432646 -TAAATTAAATA
1 TTAATTTTAATA
*
432657 TTATTTTTAATA
1 TTAATTTTAATA
*
432669 TTATATTATAGATA
1 TTA-ATTTTA-ATA
432683 TTTAATTTTA
1 -TTAATTTTA
432693 TATCATATAA
Statistics
Matches: 113, Mismatches: 17, Indels: 31
0.70 0.11 0.19
Matches are distributed among these distances:
10 8 0.07
11 9 0.08
12 40 0.35
13 29 0.26
14 24 0.21
15 3 0.03
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (12 bp):
TTAATTTTAATA
Found at i:432636 original size:63 final size:63
Alignment explanation
Indices: 432535--432692 Score: 254
Period size: 63 Copynumber: 2.6 Consensus size: 63
432525 GGTTTTATAT
*
432535 TTAA-TTTT-ATATTATATT-T-GATTTTAATTTTAATATTAATTTTGTAAATAAATTAAATA
1 TTAATTTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTGTAAATAAATTAAATA
*
432594 TTAATTTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATA
1 TTAATTTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTGTAAATAAATTAAATA
432657 TT-ATTTTTAATATTATATTATAGATATTTAATTTTA
1 TTAATTTTTAATATTATATTATAGATA-TTAATTTTA
432693 TATCATATAA
Statistics
Matches: 92, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
59 4 0.04
60 4 0.04
61 10 0.11
62 25 0.27
63 49 0.53
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (63 bp):
TTAATTTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTGTAAATAAATTAAATA
Found at i:432929 original size:7 final size:7
Alignment explanation
Indices: 432884--432916 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
432874 ATTAATATTT
432884 TAAAATA
1 TAAAATA
432891 TAAAATA
1 TAAAATA
432898 TAAAATA
1 TAAAATA
432905 TAAAATA
1 TAAAATA
432912 TAAAA
1 TAAAA
432917 AATTATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
TAAAATA
Found at i:433294 original size:31 final size:31
Alignment explanation
Indices: 433236--433295 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
433226 TAGTTGTATG
* *
433236 AATTATTTAAATTTCAGTATTATAAAACTAA
1 AATTATTTAAATCTCAGTATTACAAAACTAA
*
433267 AATTATTTAAATCTCAGTATTGCAAAACT
1 AATTATTTAAATCTCAGTATTACAAAACT
433296 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (31 bp):
AATTATTTAAATCTCAGTATTACAAAACTAA
Found at i:433750 original size:35 final size:35
Alignment explanation
Indices: 433684--433750 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
433674 TCCATTATAA
*
433684 TTAATGTTTATATTTATTAAAAATTATTATATACT
1 TTAATGTTTATATTTATTAAAAATGATTATATACT
*
433719 TTAATTTTTA-ATTTATGTTAAAAATGA-TATAT
1 TTAATGTTTATATTTA--TTAAAAATGATTATAT
433751 TGCTGTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 5 0.18
35 14 0.50
36 9 0.32
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.54
Consensus pattern (35 bp):
TTAATGTTTATATTTATTAAAAATGATTATATACT
Found at i:438524 original size:2 final size:2
Alignment explanation
Indices: 438517--438554 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
438507 TAATTAAAGA
438517 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
438555 GAATTCCACG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:440719 original size:24 final size:24
Alignment explanation
Indices: 440690--440750 Score: 97
Period size: 24 Copynumber: 2.5 Consensus size: 24
440680 AAATGATAAA
440690 CGAACATAAACGAATGGATGTTAAT
1 CGAACATAAACGAATGGATGTT-AT
*
440715 -TAACATAAACGAATGGATGTTAT
1 CGAACATAAACGAATGGATGTTAT
440738 CGAACATAAACGA
1 CGAACATAAACGA
440751 CCACAATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 2 0.06
24 31 0.94
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (24 bp):
CGAACATAAACGAATGGATGTTAT
Found at i:440832 original size:23 final size:26
Alignment explanation
Indices: 440797--440848 Score: 65
Period size: 23 Copynumber: 2.1 Consensus size: 26
440787 AAAATGAACG
* *
440797 TAAATGAATATAAAC-A-AACAA-AA
1 TAAACGAACATAAACTACAACAATAA
440820 TAAACGAACATAAACTACAACAATAA
1 TAAACGAACATAAACTACAACAATAA
440846 TAA
1 TAA
440849 TCACATAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 13 0.54
24 1 0.04
25 5 0.21
26 5 0.21
ACGTcount: A:0.65, C:0.13, G:0.04, T:0.17
Consensus pattern (26 bp):
TAAACGAACATAAACTACAACAATAA
Found at i:440834 original size:10 final size:10
Alignment explanation
Indices: 440738--440834 Score: 50
Period size: 10 Copynumber: 9.1 Consensus size: 10
440728 TGGATGTTAT
440738 CGAACATAAA
1 CGAACATAAA
440748 CGACCACAATAAA
1 CGA--AC-ATAAA
* **
440761 CCAATGTAAA
1 CGAACATAAA
*
440771 CGAACACAAA
1 CGAACATAAA
*
440781 CGAACAAAAA
1 CGAACATAAA
* *
440791 TGAACGTAAA
1 CGAACATAAA
* *
440801 TGAATATAAA
1 CGAACATAAA
*
440811 CAAACAAAATAAA
1 CGAAC---ATAAA
440824 CGAACATAAA
1 CGAACATAAA
440834 C
1 C
440835 TACAACAATA
Statistics
Matches: 64, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
10 45 0.70
11 1 0.02
12 2 0.03
13 16 0.25
ACGTcount: A:0.60, C:0.20, G:0.09, T:0.11
Consensus pattern (10 bp):
CGAACATAAA
Found at i:445334 original size:17 final size:19
Alignment explanation
Indices: 445312--445355 Score: 56
Period size: 17 Copynumber: 2.3 Consensus size: 19
445302 GACGCCATCT
445312 AAAATATT-TAA-AAATAA
1 AAAATATTATAACAAATAA
445329 AAAATATTATAACCAAATAA
1 AAAATATTATAA-CAAATAA
445349 ATAAATA
1 A-AAATA
445356 AATAAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 8 0.35
18 3 0.13
20 7 0.30
21 5 0.22
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (19 bp):
AAAATATTATAACAAATAA
Found at i:447167 original size:16 final size:17
Alignment explanation
Indices: 447146--447179 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
447136 TGAATTTATT
*
447146 AAATT-ATTTTTAATTA
1 AAATTAATTTTAAATTA
447162 AAATTAATTTTAAATTA
1 AAATTAATTTTAAATTA
447179 A
1 A
447180 TAAAATGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAATTAATTTTAAATTA
Found at i:448229 original size:3 final size:3
Alignment explanation
Indices: 448168--448209 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
448158 TCCATTTGAT
* *
448168 TTA TTA TTA TTA TTA TTA TCA TTA TTA ATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
448210 ATAATAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:449276 original size:17 final size:17
Alignment explanation
Indices: 449254--449296 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
449244 TTAATTAGTC
449254 TTATAATTTTAGTTAAT
1 TTATAATTTTAGTTAAT
449271 TTATAATTTTAGTTAAT
1 TTATAATTTTAGTTAAT
449288 TTATAATTT
1 TTATAATTT
449297 AGTCATACTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (17 bp):
TTATAATTTTAGTTAAT
Found at i:455557 original size:32 final size:32
Alignment explanation
Indices: 455521--455582 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
455511 GTCAGACACA
*
455521 AGAAGTATCTCTACGAGATGAGCATAACAACG
1 AGAAGTATCTCTACAAGATGAGCATAACAACG
*
455553 AGAAGTATCTCTATAAGATGAGCATAACAA
1 AGAAGTATCTCTACAAGATGAGCATAACAA
455583 TCATTTCTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (32 bp):
AGAAGTATCTCTACAAGATGAGCATAACAACG
Found at i:457916 original size:75 final size:75
Alignment explanation
Indices: 457823--458054 Score: 376
Period size: 75 Copynumber: 3.1 Consensus size: 75
457813 ATGATAGGGT
* * *
457823 ATGCTGAAAGCCCCTTTCAAACAAAATAAATAATGTTGACGCATTTTGAACGCTTGTATTAGCCA
1 ATGCTGAAAGCCCCTTTCAATCAGAATAAAGAATGTTGACGCATTTTGAACGCTTGTATTAGCCA
457888 ATATTGGGGC
66 ATATTGGGGC
*
457898 ATGCTGAAAGCCCCTTTCAATCAGAATAAAGAATGTTCACGCATTTTGAACGCTTGTATTAGCCA
1 ATGCTGAAAGCCCCTTTCAATCAGAATAAAGAATGTTGACGCATTTTGAACGCTTGTATTAGCCA
*
457963 ATGTTGGGGC
66 ATATTGGGGC
* *
457973 ATGCTGAAAGTCCCTTTCAATCAGAATTAAGAATGTTGACGCATTTTGAACGCTTGTATTAGCCA
1 ATGCTGAAAGCCCCTTTCAATCAGAATAAAGAATGTTGACGCATTTTGAACGCTTGTATTAGCCA
*
458038 A-AATGGGGC
66 ATATTGGGGC
*
458047 ATGTTGAA
1 ATGCTGAA
458055 GGTCTGTATC
Statistics
Matches: 146, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
74 13 0.09
75 133 0.91
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (75 bp):
ATGCTGAAAGCCCCTTTCAATCAGAATAAAGAATGTTGACGCATTTTGAACGCTTGTATTAGCCA
ATATTGGGGC
Found at i:459452 original size:22 final size:21
Alignment explanation
Indices: 459402--459456 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 21
459392 ATCTACATTC
459402 TTCAAAGATGATAGATTCTCT
1 TTCAAAGATGATAGATTCTCT
*
459423 CTCTAAAGATGATAGATTCTCTT
1 TTC-AAAGATGATAGATTCTC-T
459446 TTCAAAGATGA
1 TTCAAAGATGA
459457 AAGCTTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 2 0.07
22 25 0.83
23 3 0.10
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (21 bp):
TTCAAAGATGATAGATTCTCT
Found at i:460205 original size:122 final size:112
Alignment explanation
Indices: 459831--460377 Score: 586
Period size: 113 Copynumber: 4.8 Consensus size: 112
459821 CACTTGATGG
* **
459831 ATCAACATTTCCAGA-AGTGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCAT
1 ATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCAT
* ** **
459895 AATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCCATCACTT-GATGG
65 AATGAGAAGAACTTGTTCAACCTTTTGCTCGAAGACATCA-TTCGATAC
* * * * * *
459943 ATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAATAAGAAATTCA
1 ATCAACTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCA
* * ** * **
460007 TAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCACTCGATGG
64 TAATGAGAAGAACTTGTTCAACCTTTTGCTCGAAGACATCATTCGATAC
460056 ATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
1 ATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
*
460121 ATGAGAAGAACTTGTTCAACCTTTGCATGACTCTATCACAGAAGGAGAT-ATATC-A-AC
66 ATGAGAAGAACTTGTTCAACCTTT---TG---C--T--C-GAA-GACATCAT-TCGATAC
* *
460178 ATCAACTTTTCCAGAGAAAGTTTATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATA
1 ATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* * ** *
460243 ATGATAAGAACTTGTTTAACCTTTTGCTCGAATTCATCATTCGATGC
66 ATGAGAAGAACTTGTTCAACCTTTTGCTCGAAGACATCATTCGATAC
* * *
460290 ATCAACTTTTCCAGAAAAAGTCCATAATGAGAAGAACTCATCTGAAGAAGG-AGAAGAAGTTTAT
1 ATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCAT
*
460354 AATAAGAAGAACTTGTTCAACCTT
65 AATGAGAAGAACTTGTTCAACCTT
460378 GCCTTAATTC
Statistics
Matches: 374, Mismatches: 40, Indels: 42
0.82 0.09 0.09
Matches are distributed among these distances:
110 4 0.01
111 6 0.02
112 130 0.35
113 131 0.35
114 2 0.01
115 2 0.01
116 1 0.00
118 1 0.00
119 2 0.01
120 1 0.00
122 85 0.23
123 5 0.01
124 4 0.01
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (112 bp):
ATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
ATGAGAAGAACTTGTTCAACCTTTTGCTCGAAGACATCATTCGATAC
Found at i:460300 original size:234 final size:225
Alignment explanation
Indices: 459818--460377 Score: 700
Period size: 234 Copynumber: 2.4 Consensus size: 225
459808 GATTCAAATC
* **
459818 CATCACTT-GATGGATCAACATTTCCAGAAGTGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCA-TTCGATGGATCAACTTTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
** ** *
459882 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATCA
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCCAGAACGAGATAGATCA
* *
459947 ACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAATAAGAAATTCATAATG
130 ACATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAATTCATAATG
* *
460012 AGAAGAATTTGTTCAACCTTTTGCTTGAATT
195 AGAAGAACTTGTTCAACCTTTTGCTCGAATT
*
460043 CATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG-AGGA
1 CATCATTCGATGGATCAACTTTTCCAGA-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
460107 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTGCATGACTC-TATCACAGAAGGAGATA
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTT---TG-CTCAAATC-CAGAACGAGATA
* * * * *
460171 TATCAACATCAACTTTTCCAGAG-AAAGTTTATAATGAGAAGAACTTATCTGAAG-AGGAAGAAG
125 GATC-A-A-C-A--TTGCCAG-GTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAG
* * *
460234 AAGTTCATAATGATAAGAACTTGTTTAACCTTTTGCTCGAATT
183 AAATTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCGAATT
* *
460277 CATCATTCGATGCATCAACTTTTCCAGAAAAAGTCCATAATGAGAAGAACTCATCTGAAGAAGG-
1 CATCATTCGATGGATCAACTTTTCCAG-AAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
460341 AGAAGAAGTTTATAATAAGAAGAACTTGTTCAACCTT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTT
460378 GCCTTAATTC
Statistics
Matches: 291, Mismatches: 28, Indels: 23
0.85 0.08 0.07
Matches are distributed among these distances:
224 1 0.00
225 66 0.23
226 29 0.10
228 5 0.02
229 12 0.04
230 1 0.00
231 1 0.00
232 1 0.00
233 1 0.00
234 135 0.46
235 38 0.13
236 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (225 bp):
CATCATTCGATGGATCAACTTTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCCAGAACGAGATAGATCAA
CATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAATTCATAATGA
GAAGAACTTGTTCAACCTTTTGCTCGAATT
Done.