genome.fa.s288.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000288.1 Hibiscus syriacus cultivar Beakdansim tig00000530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81307

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3573--3614	13	3.3	13	86	6	59	52	0	0	47	1.00
8845--8932	45	1.9	45	81	6	106	44	14	7	32	1.75
23745--23794	3	16.7	3	95	0	82	62	0	0	38	0.96
25253--25376	60	2.1	59	86	10	173	41	4	20	33	1.74
25253--25420	60	2.8	59	80	12	166	43	4	19	33	1.70
27809--27880	36	2.0	36	94	0	126	41	9	20	27	1.84
29810--29865	21	2.6	21	81	13	69	67	0	5	26	1.11
41280--41384	39	2.7	38	73	8	95	20	22	23	32	1.98
47170--47204	18	1.9	18	94	0	61	14	25	34	25	1.94
47868--47907	21	2.0	20	90	5	62	25	25	27	22	2.00
53454--53488	18	1.9	18	94	0	61	14	25	34	25	1.94
54449--54513	22	3.0	21	72	18	53	15	6	7	70	1.30
56059--56141	43	1.9	43	92	0	139	48	8	7	36	1.61
56134--56165	17	1.9	17	93	6	57	50	0	0	50	1.00
56908--56950	22	2.0	22	95	0	77	48	13	6	30	1.69
58510--58566	23	2.5	23	88	0	78	31	24	24	19	1.98
72965--73126	24	6.9	22	73	18	123	82	0	11	5	0.82
72951--73126	59	3.2	54	80	11	178	81	0	11	6	0.89
72981--73126	59	2.4	59	85	10	190	82	0	10	6	0.82
72965--73097	65	2.1	65	84	9	177	83	0	12	4	0.79
72978--73095	1	118.0	1	75	0	83	85	0	10	4	0.72
74137--74171	17	2.1	17	89	10	54	42	2	25	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74390--74498	37	2.9	37	87	5	150	37	19	21	22	1.94
74514--74988	55	8.7	55	88	3	593	29	18	24	27	1.98
74514--74988	109	4.3	110	86	4	593	29	18	24	27	1.98
74559--74988	164	2.6	164	88	3	625	28	18	24	28	1.98
78853--78894	19	2.4	17	84	15	50	47	9	23	19	1.78

Tables:   1

The End!