genome.fa.s2880.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002880.1 Hibiscus syriacus cultivar Beakdansim tig00005937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129975

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5028--5053	2	13.0	2	100	0	52	50	0	0	50	1.00
8555--8672	59	2.0	60	81	1	139	27	22	23	25	2.00
10095--10142	21	2.3	20	82	6	60	35	10	0	54	1.35
14066--14097	4	8.0	4	100	0	64	75	0	0	25	0.81
15500--15532	16	2.0	17	94	5	59	48	0	6	45	1.27
16301--17535	86	14.6	84	77	7	889	25	18	20	35	1.95
16308--17535	171	7.3	171	84	4	1434	25	18	20	35	1.95
16308--16737	85	5.0	86	85	2	526	25	18	19	35	1.95
16674--16807	70	1.9	70	92	0	223	22	17	22	37	1.94
16740--17535	86	9.3	86	84	1	954	25	18	20	35	1.95
16740--17535	257	3.1	256	85	2	1040	25	18	20	35	1.95
16740--17535	428	1.9	429	84	1	1067	25	18	20	35	1.95
21064--21121	23	2.5	23	88	0	89	44	12	20	22	1.84
22995--23026	14	2.3	14	100	0	64	28	12	15	43	1.83
23174--23253	16	5.0	16	83	6	92	45	31	13	10	1.77
23126--23253	48	2.7	47	82	4	132	48	28	12	10	1.73
23123--23253	32	4.1	31	80	5	118	48	29	12	9	1.72
24406--24435	15	2.0	15	100	0	60	33	13	6	46	1.69
25480--25522	3	14.3	3	100	0	86	32	0	0	67	0.91
33800--33999	4	50.2	4	95	3	368	51	24	0	25	1.49
41626--41803	91	2.0	91	90	0	284	40	15	24	19	1.90
45851--45923	26	2.9	25	69	15	69	50	6	1	41	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46868--46920	21	2.5	21	100	0	106	35	20	7	35	1.81
51075--51117	21	2.0	21	81	0	50	27	27	25	18	1.98
51662--51689	2	14.0	2	100	0	56	50	0	0	50	1.00
52121--52463	30	11.4	30	98	0	650	23	19	23	33	1.97
53108--53171	23	2.8	23	83	9	94	31	26	25	17	1.97
61170--61235	27	2.4	27	100	0	132	42	15	13	28	1.85
61555--61652	40	2.4	39	76	6	115	33	14	11	40	1.81
61933--61997	24	2.7	24	100	0	130	35	9	26	29	1.87
62786--62838	21	2.4	22	84	6	63	56	0	7	35	1.28
63292--63652	30	12.5	30	69	16	135	40	8	2	49	1.45
63507--63652	54	2.6	56	81	10	172	42	6	0	51	1.27
63547--63605	24	2.5	23	84	13	75	38	5	0	55	1.22
63523--63642	53	2.2	53	81	10	138	40	6	0	53	1.27
63780--63828	18	2.7	18	83	3	62	42	0	8	48	1.32
67798--67863	31	2.2	31	83	8	82	36	7	7	48	1.60
70367--70393	13	2.1	13	100	0	54	37	18	7	37	1.79
76598--76695	29	3.4	28	84	6	126	40	11	12	35	1.78
76783--76874	29	3.1	28	80	7	94	42	11	9	35	1.75
77807--77846	5	8.2	5	94	5	73	57	0	0	42	0.98
83385--83543	21	7.6	21	89	6	209	40	22	22	15	1.91
85882--85922	2	20.5	2	100	0	82	48	0	0	51	1.00
89376--90500	54	20.8	54	82	6	1129	34	16	24	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89377--90437	324	3.3	324	88	3	1505	33	17	24	24	1.96
90357--90637	55	5.1	55	83	3	307	32	14	23	29	1.94
100978--101046	21	3.3	21	81	4	68	34	18	20	26	1.96
100989--101051	20	3.1	20	84	4	90	39	17	20	22	1.92
101061--101105	20	2.2	20	92	7	74	26	20	20	33	1.97
101351--101420	21	3.3	21	77	0	59	28	21	18	31	1.97
101421--101476	20	2.8	21	89	5	80	25	17	17	39	1.92
101608--101666	20	2.9	21	92	5	102	37	16	22	23	1.94
101666--101721	20	2.7	21	86	2	78	17	21	19	41	1.91
101725--101801	21	3.7	21	98	0	145	35	19	27	18	1.95
115251--115297	19	2.5	19	100	0	94	23	19	25	31	1.98
116978--117043	33	2.0	33	90	0	105	33	25	16	24	1.96
127863--127977	60	1.9	60	85	3	160	41	4	22	31	1.73
127870--127993	60	2.1	60	83	6	153	40	4	25	30	1.74
128467--128596	50	2.6	50	80	1	154	19	34	25	20	1.96
128789--128824	18	2.1	18	89	5	56	25	5	5	63	1.38
128886--129421	107	5.0	107	87	9	769	35	7	11	45	1.69
128886--129421	215	2.5	214	88	7	826	35	7	11	45	1.69

Tables:   1

The End!