genome.fa.s2883.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002883.1 Hibiscus syriacus cultivar Beakdansim tig00005946_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131533

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6260--6486	43	5.2	43	73	13	140	33	16	20	30	1.94
6373--6504	43	3.1	43	79	7	126	32	18	18	30	1.95
8460--8500	20	2.0	21	85	4	57	53	0	9	36	1.34
9796--9858	27	2.3	27	80	0	72	49	7	9	33	1.64
14710--14800	45	2.0	45	97	0	173	31	13	18	36	1.89
20530--20564	18	1.9	18	94	0	61	25	34	20	20	1.96
28024--28084	30	2.1	30	84	3	79	47	4	4	42	1.46
28211--28244	2	17.0	2	100	0	68	50	0	0	50	1.00
28226--28651	217	2.0	216	96	1	786	42	6	8	42	1.60
31479--31656	59	3.0	60	79	8	168	34	20	5	38	1.76
31762--31924	60	2.7	60	83	1	211	39	5	23	31	1.77
32318--32837	262	2.0	259	87	8	759	27	12	19	40	1.88
35530--35571	20	2.1	20	82	8	50	30	0	14	54	1.40
37182--37210	2	14.5	2	100	0	58	51	0	0	48	1.00
40795--40911	59	2.0	59	84	3	155	35	12	14	37	1.85
42295--42335	16	2.6	16	100	0	82	53	21	12	12	1.70
56932--56997	29	2.3	29	94	0	123	16	31	34	16	1.92
57050--57087	20	1.9	20	88	0	58	15	7	50	26	1.72
57076--57113	20	1.9	20	94	0	67	15	13	50	21	1.78
57644--57687	21	2.1	21	91	0	70	29	0	15	54	1.42
57664--57726	28	2.2	30	91	5	103	31	0	11	57	1.34
58236--58280	21	2.2	21	84	4	56	35	0	8	55	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58541--58599	26	2.3	25	75	18	66	47	8	3	40	1.51
61482--62031	26	22.2	26	78	14	402	43	2	10	43	1.51
61427--62067	124	5.2	124	96	0	1155	43	2	9	44	1.49
61746--62024	98	2.8	97	81	13	290	44	2	9	43	1.50
61485--62083	14	44.1	14	69	19	183	43	2	9	44	1.50
62036--62109	38	1.9	38	83	5	96	45	4	5	44	1.45
62291--62323	17	1.9	17	93	0	57	36	6	12	45	1.66
62237--62316	24	3.3	23	71	21	67	38	3	8	48	1.52
64471--64501	15	2.1	14	94	5	53	54	6	0	38	1.26
64476--64522	16	3.0	16	84	9	53	59	10	0	29	1.31
64562--64643	34	2.5	34	84	9	100	48	12	0	39	1.41
64684--64788	47	2.2	48	85	10	135	47	12	0	40	1.41
64756--64844	41	2.2	40	80	8	99	47	10	0	42	1.37
65350--65482	29	4.6	29	93	0	212	22	30	30	16	1.96
65365--65447	17	5.5	17	61	26	51	21	28	31	18	1.97
65804--65956	30	5.1	31	77	7	154	39	6	1	52	1.36
65992--66060	37	1.9	37	85	5	97	60	1	0	37	1.06
65995--66078	43	2.0	43	83	4	107	60	2	1	35	1.17
67045--67292	12	19.5	12	66	19	55	18	5	2	73	1.13
67048--67170	18	6.6	19	69	14	69	16	5	3	74	1.14
67097--67145	9	4.9	10	77	22	50	18	2	2	77	0.96
67048--67187	58	2.5	52	77	20	126	15	5	2	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67104--67187	16	5.2	15	77	14	62	14	5	1	78	0.99
67133--67181	25	1.9	26	84	12	66	12	8	2	77	1.07
67128--67187	20	3.1	19	73	21	61	11	6	1	80	0.98
67075--67197	57	2.1	58	82	14	148	14	7	3	74	1.16
67108--67249	61	2.4	56	81	11	142	16	7	1	75	1.09
68025--68065	21	2.0	21	90	0	64	36	17	31	14	1.90
72526--73835	84	15.9	81	77	6	1193	30	24	19	25	1.98
72526--73877	164	8.2	163	84	4	1561	30	24	19	25	1.98
72648--73877	249	4.9	247	81	4	1348	30	24	19	24	1.98
75272--75325	15	3.5	15	82	5	63	24	3	0	72	1.01
75410--75452	17	2.6	16	83	16	61	16	2	0	81	0.79
75410--75543	8	16.4	8	68	15	69	15	5	1	76	1.04
75410--75493	23	3.5	23	76	12	64	16	5	1	76	1.05
75351--75482	65	2.0	63	80	12	144	14	7	3	75	1.15
75403--75546	16	8.9	16	72	18	79	15	6	2	76	1.08
75503--75545	12	3.5	12	84	6	50	11	4	2	81	0.93
75501--75546	13	3.5	13	77	16	51	10	4	2	82	0.89
76139--76171	16	2.1	16	100	0	66	27	18	12	42	1.85
77850--78708	210	4.1	210	91	0	1263	34	16	21	27	1.95
83967--84008	21	2.1	21	86	8	61	50	11	4	33	1.60
85045--85073	11	2.6	11	100	0	58	6	10	27	55	1.59
85621--86219	210	2.9	210	88	0	867	33	15	22	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98508--99120	210	2.9	209	80	2	678	35	14	21	28	1.93
107378--107441	31	2.1	31	91	5	103	51	7	9	31	1.62
115564--115610	20	2.3	20	82	13	60	53	4	2	40	1.32
118884--119028	65	2.2	65	100	0	290	37	10	8	44	1.69
121817--121847	16	1.9	16	100	0	62	41	12	19	25	1.87
124601--124634	13	2.5	14	85	4	52	41	14	0	44	1.45
126891--126928	20	1.9	20	94	0	67	42	13	23	21	1.88
128294--128333	2	20.0	2	94	0	71	52	0	0	47	1.00

Tables:   1

The End!