Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002884.1 Hibiscus syriacus cultivar Beakdansim tig00005965_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49234

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
695--719
12
2.1
12
100
0
50
36
0
24
40
1.55
1961--1998
20
1.9
20
94
0
67
31
34
15
18
1.92
2016--2107
45
2.0
46
93
2
159
30
26
17
26
1.97
2390--2425
11
3.4
11
96
3
65
58
8
25
8
1.55
10755--10807
26
2.0
26
92
0
88
30
20
16
32
1.95
11977--12020
20
2.3
18
84
7
52
34
2
22
40
1.67
12297--12420
31
3.9
32
75
10
112
29
20
19
31
1.97
12302--12420
62
1.9
62
86
5
168
29
20
20
30
1.97
12297--12397
31
3.2
32
78
9
118
31
18
17
31
1.95
13158--13192
11
3.2
11
87
0
52
31
14
25
28
1.95
13185--13227
22
2.0
22
85
0
59
18
16
37
27
1.92
14750--14774
11
2.3
11
100
0
50
40
0
0
60
0.97
14770--14808
15
2.4
16
83
8
53
35
0
2
61
1.10
15019--15069
26
2.0
26
84
7
68
35
0
23
41
1.55
19593--19629
19
1.9
19
94
0
65
32
24
16
27
1.96
19713--19851
41
3.4
41
94
0
242
37
24
16
21
1.93
19735--19850
21
5.6
21
71
11
105
38
25
16
19
1.92
20440--20479
19
2.0
20
85
4
55
20
15
12
52
1.74
20487--20552
20
3.3
20
79
8
71
22
19
21
36
1.95
20539--20583
20
2.2
20
96
0
81
20
13
17
48
1.80
21069--21128
21
2.8
22
75
7
61
23
41
15
20
1.89
21068--21159
42
2.2
42
86
3
123
23
36
17
21
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21090--21159
21
3.3
21
68
4
61
24
35
18
21
1.95
22316--22384
23
3.0
23
85
8
95
28
26
24
20
1.99
22400--22612
103
2.1
103
96
0
390
36
23
14
25
1.93
27605--27650
23
2.0
23
91
0
74
28
26
26
19
1.99
27666--27878
103
2.1
103
96
0
390
36
23
13
25
1.92
31282--31384
20
5.2
20
86
1
111
38
25
18
17
1.92
31350--31514
20
8.6
20
81
11
168
26
20
21
32
1.97
31685--31719
18
1.9
18
94
0
61
17
2
25
54
1.57
31851--31922
21
3.5
20
74
12
74
16
18
22
43
1.88
31851--31932
41
2.0
41
85
4
112
18
19
20
41
1.91
31985--32021
19
1.9
19
88
0
56
24
16
27
32
1.96
32969--33025
24
2.3
24
82
11
71
52
1
1
43
1.21
38432--38475
16
2.8
16
86
10
54
31
11
18
38
1.86
38602--38697
31
3.1
31
83
3
113
23
19
22
33
1.97
43632--43658
2
13.5
2
100
0
54
51
0
0
48
1.00
44033--44076
16
2.8
16
86
10
54
34
9
18
38
1.82
44203--44290
31
2.8
31
83
6
108
25
17
21
36
1.94
46468--46623
23
6.8
23
80
2
154
16
23
24
35
1.94
46485--46621
69
2.0
69
92
0
229
17
24
22
35
1.95
46445--46623
46
3.9
46
81
4
175
17
22
24
35
1.95

Tables:   1

The End!