genome.fa.s2886.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002886.1 Hibiscus syriacus cultivar Beakdansim tig00005968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85199

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4608--4652	19	2.3	20	92	3	74	44	4	22	28	1.72
5512--5579	23	3.0	23	86	0	100	17	26	26	29	1.98
7654--7684	15	2.1	15	93	0	53	45	0	0	54	0.99
7838--7875	20	1.9	20	88	0	58	21	26	10	42	1.85
9074--9239	30	5.6	28	75	11	120	18	12	10	58	1.62
9135--9232	29	3.3	29	79	9	101	15	12	11	61	1.57
9073--9232	59	2.7	58	77	8	151	17	13	10	58	1.62
9370--9430	29	2.2	29	83	13	76	27	9	1	60	1.38
10157--10207	23	2.1	24	82	7	59	23	15	1	58	1.47
10216--10273	15	3.5	15	70	20	53	18	3	13	63	1.43
10238--10332	28	3.3	29	79	7	88	15	12	11	60	1.60
10217--10291	35	2.1	35	85	11	100	17	6	12	64	1.48
10467--10527	29	2.2	29	83	13	76	26	9	3	60	1.43
12885--12927	18	2.4	18	92	0	68	18	51	20	9	1.74
13577--13718	43	3.3	43	94	2	241	15	23	25	35	1.94
13577--13701	42	3.0	42	97	1	232	16	21	26	35	1.95
16411--16471	31	2.0	31	93	0	104	47	3	3	45	1.35
16547--16611	31	2.1	32	82	2	78	56	13	7	21	1.62
20210--20252	20	2.2	20	87	4	61	20	6	6	65	1.41
22738--22762	2	12.5	2	100	0	50	52	0	0	48	1.00
26472--26638	60	2.8	60	86	5	221	29	19	5	44	1.73
26767--26917	58	2.6	58	81	9	171	43	3	19	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27629--27653	11	2.3	11	100	0	50	8	8	12	72	1.29
29368--29417	26	1.9	26	87	0	73	54	4	8	34	1.49
29738--29829	27	3.3	27	76	8	76	59	22	5	11	1.52
29764--29826	15	4.2	15	83	0	90	61	25	4	7	1.43
29769--29845	15	4.8	17	73	16	58	59	20	7	11	1.56
29849--29899	21	2.3	22	83	10	59	54	19	5	19	1.64
29905--30159	3	85.0	3	70	1	71	58	22	7	11	1.56
29939--30159	24	9.5	24	70	7	114	59	22	7	10	1.56
29921--30144	21	10.1	21	67	13	83	58	22	7	11	1.57
30058--30117	27	2.2	27	93	0	102	61	18	5	15	1.51
30078--30280	12	16.4	12	66	11	97	59	20	7	12	1.58
30222--30277	27	2.1	27	89	0	85	58	25	7	8	1.53
33851--33902	18	2.9	18	91	0	86	17	25	34	23	1.96
40222--40254	13	2.5	13	95	0	57	27	18	0	54	1.44
41810--42064	79	3.2	80	87	4	361	33	26	19	20	1.97
45733--45807	21	3.7	20	81	3	78	28	25	17	29	1.97
45795--46023	20	11.4	20	83	5	248	36	25	17	19	1.94
46937--46961	12	2.1	12	100	0	50	72	0	28	0	0.86
49244--49494	33	7.2	33	69	17	168	47	17	21	13	1.82
49258--49494	53	4.5	53	94	1	413	47	17	21	13	1.81
49258--49500	19	13.7	19	75	18	247	46	17	21	13	1.83
49244--49423	86	2.1	85	84	10	233	47	17	21	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49258--49491	105	2.2	106	95	0	416	47	17	21	13	1.81
49471--49586	53	2.2	52	84	3	151	19	22	18	38	1.93
49509--49596	19	4.8	19	82	14	123	14	21	15	47	1.82
49687--49723	14	2.6	14	91	0	65	45	21	0	32	1.52
50455--50511	14	3.7	14	75	20	60	8	24	22	43	1.81
50450--50526	33	2.3	33	100	0	154	7	24	22	45	1.78
50502--50558	20	2.8	20	79	7	71	15	19	19	45	1.85
50650--50720	33	2.2	33	94	0	124	47	16	23	11	1.79
51100--51231	20	6.6	20	90	0	192	21	20	26	31	1.98
51225--51272	20	2.3	20	85	3	69	35	14	22	27	1.93
51956--52440	111	4.3	111	87	2	677	45	12	11	30	1.77
52402--52447	23	2.0	22	83	4	56	47	6	8	36	1.60
52873--53245	112	3.3	111	88	2	532	44	9	11	34	1.74
52107--53568	804	1.8	804	92	0	2469	42	10	9	37	1.71
53743--53767	11	2.3	11	100	0	50	36	8	8	48	1.62
54090--54124	5	6.8	5	87	6	52	5	17	0	77	0.96
58028--58058	2	15.5	2	100	0	62	48	0	0	51	1.00
63741--64254	270	1.9	271	93	1	879	25	18	17	38	1.93
67213--67250	18	2.2	17	90	4	58	39	21	18	21	1.93
67827--67888	23	2.7	23	85	5	81	20	22	29	27	1.99
73220--73259	21	2.1	19	86	13	55	52	12	0	35	1.39
73731--73886	31	5.0	31	92	1	251	38	22	18	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74867--74924	20	2.8	21	86	7	91	18	25	24	31	1.98
75808--75850	17	2.6	16	78	7	50	39	25	0	34	1.56
78587--78710	31	4.0	31	93	3	198	37	23	19	19	1.94
79695--79754	20	2.8	20	83	16	77	18	25	25	31	1.97
82024--82213	101	1.9	99	90	4	301	31	26	17	23	1.97
83755--83788	2	16.0	2	88	11	50	47	0	5	47	1.26

Tables:   1

The End!