Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002888.1 Hibiscus syriacus cultivar Beakdansim tig00005970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64265

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5432--5812
200
1.9
200
82
3
471
34
19
19
26
1.95
6124--6156
2
16.5
2
87
12
50
48
0
3
48
1.17
6208--6364
71
2.2
71
80
7
167
42
1
8
47
1.46
6235--6377
34
4.0
36
74
17
118
41
2
9
46
1.47
6444--6475
10
3.1
11
86
13
50
21
0
0
78
0.76
8695--8763
29
2.4
30
90
7
108
50
0
1
47
1.09
8702--8767
31
2.2
29
86
7
89
56
0
1
42
1.08
8755--8811
24
2.4
23
85
11
71
61
0
1
36
1.07
8839--8892
19
3.0
18
74
20
51
42
0
1
55
1.10
8841--8902
16
3.7
17
76
16
58
40
0
3
56
1.15
9003--9085
23
3.6
22
79
6
76
56
1
2
39
1.20
9824--9867
15
2.7
15
82
10
52
50
0
2
47
1.13
12447--12497
15
3.5
16
69
30
51
29
0
11
58
1.33
15634--15658
7
3.6
7
100
0
50
12
44
12
32
1.78
20986--21043
24
2.5
24
81
13
75
18
22
25
32
1.97
21577--21641
11
5.9
11
78
7
69
32
13
21
32
1.93
21577--21640
22
2.9
23
81
6
78
32
14
20
32
1.92
21577--21640
33
1.9
33
87
6
94
32
14
20
32
1.92
21724--21770
19
2.5
20
86
10
71
21
21
12
44
1.85
28737--28773
19
1.9
19
94
0
65
35
18
5
40
1.74
32674--32734
31
2.0
31
83
0
77
45
19
3
31
1.66
32854--32905
24
2.2
24
89
0
77
40
21
19
19
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32894--32971
23
3.4
23
82
3
86
37
26
20
15
1.92
32907--32971
22
2.9
22
86
2
85
33
27
23
15
1.95
34548--34587
17
2.4
17
86
0
53
32
15
12
40
1.84
34643--34688
18
2.6
18
92
0
74
32
6
13
47
1.68
36191--36241
8
6.2
8
77
11
50
80
1
5
11
0.97
37068--37124
21
2.9
19
79
18
64
50
5
26
17
1.67
39044--39077
17
2.1
16
88
5
50
14
8
0
76
1.01
45419--45461
20
2.1
21
87
8
63
16
13
2
67
1.33
45424--45467
20
2.2
20
84
11
56
18
18
0
63
1.31
49268--49301
17
2.1
16
88
5
50
14
8
0
76
1.01
50134--50173
17
2.4
17
86
0
53
32
15
12
40
1.84
50151--50238
17
5.2
17
72
8
54
29
14
11
44
1.80
50229--50274
18
2.6
18
92
0
74
32
6
13
47
1.68
54908--54961
28
1.9
28
88
0
81
27
3
14
53
1.58
61176--61220
23
2.0
23
86
0
63
66
4
2
26
1.22
62951--62997
12
3.8
12
78
16
51
74
0
17
8
1.05
62952--63002
21
2.4
21
80
6
59
76
0
17
5
0.98
63817--63845
13
2.2
13
100
0
58
6
6
0
86
0.72

Tables:   1

The End!