genome.fa.s289.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000289.1 Hibiscus syriacus cultivar Beakdansim tig00000533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75869

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1190--1236	19	2.4	19	82	3	58	44	12	17	25	1.84
3869--3903	2	18.0	2	94	5	63	51	0	0	48	1.00
3866--3903	19	2.0	19	100	0	76	52	0	0	47	1.00
3871--3903	17	1.9	17	100	0	66	51	0	0	48	1.00
3869--3902	15	2.3	15	95	5	61	52	0	0	47	1.00
4591--4637	2	24.5	2	79	16	55	44	0	4	51	1.21
4591--4637	17	2.8	17	84	9	62	44	0	4	51	1.21
5653--5680	3	9.3	3	100	0	56	32	0	67	0	0.91
10123--10150	10	2.8	10	100	0	56	39	17	21	21	1.93
13036--13335	45	6.6	45	93	1	485	27	21	12	39	1.89
13036--13376	135	2.5	135	88	5	431	27	21	12	38	1.89
20016--20360	45	7.6	45	88	2	489	30	20	10	39	1.86
24927--24961	18	1.9	18	88	0	52	8	14	0	77	0.99
31197--31934	6	124.2	6	96	2	1359	49	17	0	32	1.48
32072--32132	31	1.9	33	86	6	90	26	21	24	27	1.99
33051--33087	17	2.2	17	100	0	74	18	43	24	13	1.86
40143--40180	7	5.4	7	93	0	67	15	26	28	28	1.96
43259--43514	141	1.8	141	86	0	368	36	15	14	33	1.88
46157--46244	44	2.0	44	82	4	106	31	17	22	28	1.96
49131--49205	35	2.1	35	90	0	114	32	0	22	45	1.53
50257--50333	35	2.2	35	83	0	100	42	0	15	41	1.47
53863--53921	22	2.7	22	74	7	59	20	6	5	67	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54534--54564	16	1.9	16	100	0	62	25	0	32	41	1.56
57425--57454	2	15.0	2	100	0	60	50	0	0	50	1.00
58248--58307	23	2.6	23	91	0	93	18	26	26	28	1.98
60014--60136	39	3.2	39	77	4	131	24	30	7	38	1.82
66182--66477	140	2.1	142	83	5	379	39	15	12	31	1.85
67202--67283	36	2.4	34	82	11	89	13	37	8	40	1.75
69507--69564	24	2.4	24	97	0	107	32	15	24	27	1.95
71211--71516	85	3.6	85	86	2	411	33	16	19	30	1.94
72703--72736	15	2.3	15	90	10	52	82	0	8	8	0.85
72687--72754	27	2.5	27	83	11	77	75	2	10	11	1.16
73876--73933	11	5.1	11	75	21	57	48	6	1	43	1.40
73816--73933	34	3.4	33	78	16	116	49	6	2	41	1.43
73876--73933	12	5.0	12	72	19	52	48	6	1	43	1.40
73873--73954	34	2.4	34	84	8	96	43	8	3	43	1.52
74001--74104	37	2.9	36	85	7	131	47	6	5	40	1.54
74674--75746	78	13.4	80	74	10	735	25	20	24	29	1.99
74671--75356	162	4.3	163	79	9	635	25	20	23	29	1.99
74943--75738	83	9.9	82	70	12	268	25	19	25	30	1.98
75076--75602	243	2.2	243	85	4	697	25	18	24	30	1.98
75348--75746	160	2.5	162	86	4	551	25	19	25	29	1.98

Tables:   1

The End!