Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002890.1 Hibiscus syriacus cultivar Beakdansim tig00005974_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5046466
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 21
Found at i:2661156 original size:29 final size:29
Alignment explanation
Indices: 2661118--2661190 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
2661108 ATGGCACTTT
* *
2661118 ACATTCATCAACACAAAATATGACAGGTA
1 ACATACATCAACACAAAAAATGACAGGTA
* *
2661147 ACAT-CTATCAACACAAAAAATGGCAGTTA
1 ACATAC-ATCAACACAAAAAATGACAGGTA
2661176 ACATACATCAACACA
1 ACATACATCAACACA
2661191 TATTGAAGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
28 1 0.03
29 37 0.95
30 1 0.03
ACGTcount: A:0.49, C:0.23, G:0.08, T:0.19
Consensus pattern (29 bp):
ACATACATCAACACAAAAAATGACAGGTA
Found at i:2662261 original size:22 final size:23
Alignment explanation
Indices: 2662236--2662292 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
2662226 TTGAATTCAC
* *
2662236 AACAACTAAATAGTAAAT-AAAT
1 AACAACTAAACAGCAAATAAAAT
* *
2662258 AACAAATAAACAGCAACTAAAAT
1 AACAACTAAACAGCAAATAAAAT
*
2662281 AGCAACTAAACA
1 AACAACTAAACA
2662293 TCCAAAAGAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.63, C:0.16, G:0.05, T:0.16
Consensus pattern (23 bp):
AACAACTAAACAGCAAATAAAAT
Found at i:2663207 original size:34 final size:33
Alignment explanation
Indices: 2663141--2663208 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
2663131 TATTGAATTC
* *
2663141 ACATCAACTAAATAGCAAATAAATAACAAATAA
1 ACATCAACTAAATAACAAATAAACAACAAATAA
* * *
2663174 ACATCAACTAAAATAACAACTAAACATCCAATAA
1 ACATCAACT-AAATAACAAATAAACAACAAATAA
2663208 A
1 A
2663209 TAGACATAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 9 0.31
34 20 0.69
ACGTcount: A:0.62, C:0.19, G:0.01, T:0.18
Consensus pattern (33 bp):
ACATCAACTAAATAACAAATAAACAACAAATAA
Found at i:2663265 original size:11 final size:11
Alignment explanation
Indices: 2663243--2663276 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
2663233 AATTGAATTC
2663243 ACAACAACTAA
1 ACAACAACTAA
* *
2663254 ATAACAAATAA
1 ACAACAACTAA
2663265 ACAACAACTAA
1 ACAACAACTAA
2663276 A
1 A
2663277 AGAGCAATTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.68, C:0.21, G:0.00, T:0.12
Consensus pattern (11 bp):
ACAACAACTAA
Found at i:2663299 original size:91 final size:91
Alignment explanation
Indices: 2663094--2663362 Score: 318
Period size: 91 Copynumber: 2.9 Consensus size: 91
2663084 AATAAACAAA
* *
2663094 AACTAAACATCCAATAAATAGACATAATATCCAATAATATTGAATTCACA-TCAACTAAATAGCA
1 AACTAAACATCCAATAAATAGACATAATATCCAATAATATTTAATTGA-ATTC-AC---A-A-CA
* * *
2663158 AATAAATAACAAATAAACATCAACTAAAATAAC
59 ACTAAATAACAAATAAACAACAACTAAAAGAAC
2663191 AACTAAACATCCAATAAATAGACATAATATCCAATAATATTTAATTGAATTCACAACAACTAAAT
1 AACTAAACATCCAATAAATAGACATAATATCCAATAATATTTAATTGAATTCACAACAACTAAAT
*
2663256 AACAAATAAACAACAACTAAAAGAGC
66 AACAAATAAACAACAACTAAAAGAAC
* * *
2663282 AATTAAACATCCAATAAACAGACATAATATCCAAT-A-A--T-ATTGAATTCACAGCAACTAAAT
1 AACTAAACATCCAATAAATAGACATAATATCCAATAATATTTAATTGAATTCACAACAACTAAAT
* *
2663342 AGA-AAATAAATAACAAATAAA
66 A-ACAAATAAACAACAACTAAA
2663363 CAGCAACTAA
Statistics
Matches: 159, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
86 38 0.24
87 2 0.01
89 1 0.01
90 1 0.01
91 64 0.40
92 1 0.01
93 1 0.01
96 3 0.02
97 48 0.30
ACGTcount: A:0.57, C:0.17, G:0.04, T:0.22
Consensus pattern (91 bp):
AACTAAACATCCAATAAATAGACATAATATCCAATAATATTTAATTGAATTCACAACAACTAAAT
AACAAATAAACAACAACTAAAAGAAC
Found at i:2663301 original size:102 final size:97
Alignment explanation
Indices: 2663094--2663388 Score: 354
Period size: 97 Copynumber: 3.1 Consensus size: 97
2663084 AATAAACAAA
* *
2663094 AACTAAACATCCAATAAATAGACATAATATCCAATAATATTGAATTCACATCAACTAAATAGCAA
1 AACTAAACATCCAATAAATAGACATAATATCCAATAATATTGAATTCACAACAACTAAATAACAA
* *
2663159 ATAAATAACAAATAAACATCAACTAAAATAAC
66 ATAAACAACAAATAAACAGCAACTAAAATAAC
* * *
2663191 AACTAAACATCCAATAAATAGACATAATATCCAATAATATTTAATTGA-ATTC-AC-----AACA
1 AACTAAACATCCAATAAATAGACATAATATCCAATAATATTGAATTCACA-ACAACTAAATAACA
* * * * *
2663249 ACTAAATAACAAATAAACAACAACTAAAAGAGC
65 AATAAACAACAAATAAACAGCAACTAAAATAAC
* * *
2663282 AATTAAACATCCAATAAACAGACATAATATCCAATAATATTGAATTCACAGCAACTAAATAGA-A
1 AACTAAACATCCAATAAATAGACATAATATCCAATAATATTGAATTCACAACAACTAAATA-ACA
* *
2663346 AATAAATAACAAATAAACAGCAACTAAAATATC
65 AATAAACAACAAATAAACAGCAACTAAAATAAC
*
2663379 AAATAAACAT
1 AACTAAACAT
2663389 AAAGTAATTA
Statistics
Matches: 172, Mismatches: 17, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
91 77 0.45
92 3 0.02
96 3 0.02
97 88 0.51
98 1 0.01
ACGTcount: A:0.57, C:0.17, G:0.04, T:0.22
Consensus pattern (97 bp):
AACTAAACATCCAATAAATAGACATAATATCCAATAATATTGAATTCACAACAACTAAATAACAA
ATAAACAACAAATAAACAGCAACTAAAATAAC
Found at i:2663384 original size:86 final size:90
Alignment explanation
Indices: 2663160--2663387 Score: 279
Period size: 91 Copynumber: 2.6 Consensus size: 90
2663150 AAATAGCAAA
* * * * *
2663160 TAAATAACAAATAAACATCAACTAAAATAACAACTAAACATCCAATAAATAGACATAATATCCAA
1 TAAATAACAAATAAACAACAAATAAAACAGCAACTAAACATCCAATAAACAGACATAATATCCAA
2663225 TAATATTTAATTGAATTCACAACAAC
66 TAATA-TTAATTGAATTCACAACAAC
* * *
2663251 TAAATAACAAATAAACAACAACTAAAAGAGCAATTAAACATCCAATAAACAGACATAATATCCAA
1 TAAATAACAAATAAACAACAAATAAAACAGCAACTAAACATCCAATAAACAGACATAATATCCAA
*
2663316 T-A-A-T-ATTGAATTCACAGCAAC
66 TAATATTAATTGAATTCACAACAAC
* * *
2663337 TAAATAGA-AAATAAATAACAAAT-AAACAGCAACTAAAATATCAAATAAACA
1 TAAATA-ACAAATAAACAACAAATAAAACAGCAACT-AAACATCCAATAAACA
2663388 TAAAGTAATT
Statistics
Matches: 123, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
85 9 0.07
86 49 0.40
87 2 0.02
89 1 0.01
90 1 0.01
91 61 0.50
ACGTcount: A:0.58, C:0.17, G:0.04, T:0.21
Consensus pattern (90 bp):
TAAATAACAAATAAACAACAAATAAAACAGCAACTAAACATCCAATAAACAGACATAATATCCAA
TAATATTAATTGAATTCACAACAAC
Found at i:2664160 original size:11 final size:11
Alignment explanation
Indices: 2664144--2664202 Score: 52
Period size: 11 Copynumber: 5.5 Consensus size: 11
2664134 ATCAAGAGCC
2664144 ATAAATAACAA
1 ATAAATAACAA
**
2664155 ATAAATGGCAA
1 ATAAATAACAA
*
2664166 ATAAACAACAA
1 ATAAATAACAA
*
2664177 GTACAAT--C-A
1 ATA-AATAACAA
2664186 ATAAATAACAA
1 ATAAATAACAA
2664197 ATAAAT
1 ATAAAT
2664203 GATAAGAGCA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
8 3 0.08
9 3 0.08
10 2 0.06
11 26 0.72
12 2 0.06
ACGTcount: A:0.64, C:0.12, G:0.05, T:0.19
Consensus pattern (11 bp):
ATAAATAACAA
Found at i:2665765 original size:36 final size:37
Alignment explanation
Indices: 2665711--2665793 Score: 132
Period size: 36 Copynumber: 2.3 Consensus size: 37
2665701 CCACCATTCA
** *
2665711 ATAAAAAAATCACTGAATACAACTCAATCAAAACATC
1 ATAAAAATTTCACCGAATACAACTCAATCAAAACATC
2665748 A-AAAAATTTCACCGAATACAACTCAATCAAAACATC
1 ATAAAAATTTCACCGAATACAACTCAATCAAAACATC
2665784 ATAAAAATTT
1 ATAAAAATTT
2665794 TCACTAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
36 33 0.79
37 9 0.21
ACGTcount: A:0.55, C:0.20, G:0.02, T:0.22
Consensus pattern (37 bp):
ATAAAAATTTCACCGAATACAACTCAATCAAAACATC
Found at i:2665803 original size:13 final size:13
Alignment explanation
Indices: 2665785--2665809 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2665775 CAAAACATCA
2665785 TAAAAATTTTCAC
1 TAAAAATTTTCAC
2665798 TAAAAATTTTCA
1 TAAAAATTTTCA
2665810 TGTTAACCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
TAAAAATTTTCAC
Found at i:2668383 original size:22 final size:21
Alignment explanation
Indices: 2668355--2668396 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
2668345 ACATTAAAAG
*
2668355 AAATTAATATATATAATTTATA
1 AAATTAAAATAT-TAATTTATA
*
2668377 AAATTAAAATATTTATTTAT
1 AAATTAAAATATTAATTTAT
2668397 TTAAAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
AAATTAAAATATTAATTTATA
Found at i:2668503 original size:24 final size:24
Alignment explanation
Indices: 2668468--2668524 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
2668458 AATATATTAA
*
2668468 AATATGATTAAAATTATTTAA-AAAT
1 AATAT-ATTAAAATTA-TAAATAAAT
*
2668493 AATATATTAAATTTATAAATAAAT
1 AATATATTAAAATTATAAATAAAT
2668517 AA-ATATTA
1 AATATATTA
2668525 TTTATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 9 0.31
24 15 0.52
25 5 0.17
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (24 bp):
AATATATTAAAATTATAAATAAAT
Found at i:2668646 original size:26 final size:29
Alignment explanation
Indices: 2668611--2668674 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
2668601 TATAAAAGCA
*
2668611 AAATATAATT-AAACAAT-GT-TTAAAAT
1 AAATAAAATTAAAACAATAGTATTAAAAT
*
2668637 AAATAAAATTAAAACTATAGTATTAAAAT
1 AAATAAAATTAAAACAATAGTATTAAAAT
*
2668666 GAATAAAAT
1 AAATAAAAT
2668675 AATAAAGCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 9 0.28
27 6 0.19
28 2 0.06
29 15 0.47
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (29 bp):
AAATAAAATTAAAACAATAGTATTAAAAT
Found at i:2670118 original size:3 final size:3
Alignment explanation
Indices: 2670105--2670153 Score: 62
Period size: 3 Copynumber: 16.3 Consensus size: 3
2670095 AAAAATATAT
* * * *
2670105 ATA ATA TTA ATA ATA ATA ATA AAA ATA ATA ATA ATT TTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
2670153 A
1 A
2670154 AAATGAACTG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:2670123 original size:30 final size:30
Alignment explanation
Indices: 2670088--2670156 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
2670078 TTGTAATATT
2670088 TAATAAAAAAAAT-ATATATAATATTAATAA
1 TAATAAAAAAAATAATA-ATAATATTAATAA
* *
2670118 TAATAATAAAAATAATAATAATTTTAATAA
1 TAATAAAAAAAATAATAATAATATTAATAA
2670148 TAATAAAAA
1 TAATAAAAA
2670157 TGAACTGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
30 32 0.91
31 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (30 bp):
TAATAAAAAAAATAATAATAATATTAATAA
Found at i:2670131 original size:15 final size:15
Alignment explanation
Indices: 2670088--2670153 Score: 62
Period size: 15 Copynumber: 4.4 Consensus size: 15
2670078 TTGTAATATT
*
2670088 TAATAAAAAAAAT-A
1 TAATAATAAAAATAA
**
2670102 TATATAATATTAATAA
1 TA-ATAATAAAAATAA
2670118 TAATAATAAAAATAA
1 TAATAATAAAAATAA
***
2670133 TAATAATTTTAATAA
1 TAATAATAAAAATAA
2670148 TAATAA
1 TAATAA
2670154 AAATGAACTG
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
14 2 0.05
15 37 0.88
16 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
TAATAATAAAAATAA
Found at i:2670610 original size:46 final size:46
Alignment explanation
Indices: 2670409--2670943 Score: 767
Period size: 45 Copynumber: 11.8 Consensus size: 46
2670399 TAAAATCTTA
* * * * * *
2670409 TTTGAAAATATCCTGCACTGTAGGTCTTATAGATGACCCGAA-GAT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
* * * **
2670454 TTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGG-T
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
*
2670499 TTTGAAAACATCAAGCACTGAAGGGCTTACAGATGACCCGAAGG-T
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
* *
2670544 TTTGAAAACATCAAGCACTGAAGGGCTTACAGATGACCTGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
2670590 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-T
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
* *
2670635 TTTGAAAACATCAAGCATTGAAGGGCTTACAGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
** *
2670681 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCTAAAGTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
*
2670727 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCTGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
* *
2670773 TTTGAAAACATTATGCACTGAAGGGCTTATAGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
**
2670819 TTTTTAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-T
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
* * *
2670864 TTTGAAAACATCAAGCACTTAAGGGCTTAAAGATGACCCGAA-GTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
* *
2670909 TTTGAAAACATCAAGCACTGAAGGTCTTACAGATG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATG
2670944 TGGGAAATAG
Statistics
Matches: 451, Mismatches: 35, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
44 1 0.00
45 237 0.53
46 213 0.47
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (46 bp):
TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
Found at i:2670631 original size:91 final size:91
Alignment explanation
Indices: 2670409--2670943 Score: 768
Period size: 91 Copynumber: 5.9 Consensus size: 91
2670399 TAAAATCTTA
* * * * * * **
2670409 TTTGAAAATATCCTGCACTGTAGGTCTTATAGATGACCCGAAGATTTTGAAAACATCCTGCACTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCAAGCACTG
* * **
2670474 TAGGTCTTATGGATGACCCGAAGG-T
66 AAGGGCTTACAGATGACCCGAAGGTT
*
2670499 TTTGAAAACATCAAGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCAAGCACTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCAAGCACTG
*
2670564 AAGGGCTTACAGATGACCTGAAGGTT
66 AAGGGCTTACAGATGACCCGAAGGTT
*
2670590 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCAAGCATTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCAAGCACTG
2670655 AAGGGCTTACAGATGACCCGAAGGTT
66 AAGGGCTTACAGATGACCCGAAGGTT
** * *
2670681 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCTAAAGTTTTTTGAAAACATCATGCACT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAG-GTTTTGAAAACATCAAGCACT
*
2670746 GAAGGGCTTACAGATGACCTGAAGGTT
65 GAAGGGCTTACAGATGACCCGAAGGTT
* * ** *
2670773 TTTGAAAACATTATGCACTGAAGGGCTTATAGATGACCCGAAGGTTTTTTTAAACATCATGCACT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-TTTTGAAAACATCAAGCACT
2670838 GAAGGGCTTACAGATGACCCGAAGG-T
65 GAAGGGCTTACAGATGACCCGAAGGTT
* * * *
2670864 TTTGAAAACATCAAGCACTTAAGGGCTTAAAGATGACCCGAAGTTTTTGAAAACATCAAGCACTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCAAGCACTG
*
2670929 AAGGTCTTACAGATG
66 AAGGGCTTACAGATG
2670944 TGGGAAATAG
Statistics
Matches: 402, Mismatches: 40, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
90 107 0.27
91 170 0.42
92 125 0.31
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (91 bp):
TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCAAGCACTG
AAGGGCTTACAGATGACCCGAAGGTT
Found at i:2671631 original size:22 final size:22
Alignment explanation
Indices: 2671606--2671660 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
2671596 AATAAAGCTT
2671606 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* *
2671628 TCATCTTTGGAGAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
2671650 TCATCTTTGAA
1 TCATCTTTGAA
2671661 GAATGTAGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:2675782 original size:7 final size:8
Alignment explanation
Indices: 2675763--2675800 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
2675753 TGATTCAATT
2675763 TTTTTTCC
1 TTTTTTCC
2675771 TTTTTTCC
1 TTTTTTCC
2675779 TTTTTTCC
1 TTTTTTCC
*
2675787 TTTTTCCC
1 TTTTTTCC
2675795 TTTTTT
1 TTTTTT
2675801 TGTTTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTTCC
Found at i:2678160 original size:14 final size:14
Alignment explanation
Indices: 2678143--2678188 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
2678133 TTATGTCAAG
2678143 ATGAAAATGTAAAA
1 ATGAAAATGTAAAA
2678157 ATGAAAATGT--AA
1 ATGAAAATGTAAAA
2678169 AT-ACAAATGTAAAA
1 ATGA-AAATGTAAAA
2678183 ATGAAA
1 ATGAAA
2678189 GGATGCAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
11 1 0.04
12 10 0.36
14 16 0.57
15 1 0.04
ACGTcount: A:0.63, C:0.02, G:0.13, T:0.22
Consensus pattern (14 bp):
ATGAAAATGTAAAA
Found at i:2680668 original size:2 final size:2
Alignment explanation
Indices: 2680661--2680689 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2680651 TTAATAATAA
2680661 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2680690 AATAGTATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2681510 original size:133 final size:134
Alignment explanation
Indices: 2681220--2681513 Score: 318
Period size: 133 Copynumber: 2.2 Consensus size: 134
2681210 TATTAATTTT
* * * *
2681220 TATATATATAAATAAGATATTTATTTATTTAGAAATATCAGAAAAGGACTTCTAGGTGCTTTAAG
1 TATATAAATAAATAA-ATATTTATTTATTTAAAAATATCAGAAAAGGACATCCAGGTGCTTTAAG
*
2681285 ACAGCTCTTTTCTTAATATAAATAAATAAATAAATAATAATAAAATATTAAAAGAAATTAATATA
65 ACAGCTCCTTTCTTAATATAAATAAATAAATAAATAATAATAAAATATTAAAAGAAATTAATATA
2681350 TATAA
130 TATAA
* * * *
2681355 TTTAT-AA-AAGTAAAATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAGTTGTTTTAA
1 TATATAAATAAAT-AAATATTTATTTATTTAAAAATATCAGAAAA-GGACATCCAGGTGCTTTAA
* ** * * *
2681418 GACTG-TCCTTTCTTAATATTGATAAATATATTAAA-ACATGATTAAAATGATT-TAA-AAA-TA
64 GACAGCTCCTTTCTTAATATAAATAAATA-AATAAATA-AT-AATAAAAT-ATTAAAAGAAATTA
2681478 ATATAT-TAAA
125 ATATATAT-AA
2681488 TATATAAATAAATAAATA-TTATTTAT
1 TATATAAATAAATAAATATTTATTTAT
2681514 ATATATATTT
Statistics
Matches: 133, Mismatches: 17, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
132 1 0.01
133 74 0.56
134 39 0.29
135 16 0.12
136 3 0.02
ACGTcount: A:0.48, C:0.06, G:0.07, T:0.38
Consensus pattern (134 bp):
TATATAAATAAATAAATATTTATTTATTTAAAAATATCAGAAAAGGACATCCAGGTGCTTTAAGA
CAGCTCCTTTCTTAATATAAATAAATAAATAAATAATAATAAAATATTAAAAGAAATTAATATAT
ATAA
Found at i:2681537 original size:35 final size:35
Alignment explanation
Indices: 2681496--2681572 Score: 145
Period size: 35 Copynumber: 2.2 Consensus size: 35
2681486 AATATATAAA
2681496 TAAATAAATATTATTTATATATATATTTACATGAC
1 TAAATAAATATTATTTATATATATATTTACATGAC
*
2681531 TAAATAAATATTATTTATATATATATTTTCATGAC
1 TAAATAAATATTATTTATATATATATTTACATGAC
2681566 TAAATAA
1 TAAATAA
2681573 TAATAATAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (35 bp):
TAAATAAATATTATTTATATATATATTTACATGAC
Found at i:2683102 original size:2 final size:2
Alignment explanation
Indices: 2683095--2683123 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2683085 TTAATAAATA
2683095 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2683124 ATAATTATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2683102 original size:18 final size:17
Alignment explanation
Indices: 2683079--2683167 Score: 60
Period size: 20 Copynumber: 5.1 Consensus size: 17
2683069 TTGGGCTTTT
2683079 TAATATTTAATAAATAA
1 TAATATTTAATAAATAA
* *
2683096 T-ATATATATATATATATA
1 TAATATTTA-ATAAATA-A
*
2683114 TATATATATAATAATTATAA
1 TA-ATATTTAATAA--ATAA
2683134 TAATAATTATAAT-AATAA
1 TAAT-ATT-TAATAAATAA
2683152 TAAT-TTTAAT-AATAA
1 TAATATTTAATAAATAA
2683167 T
1 T
2683168 TAAAATGAAC
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
15 10 0.17
16 8 0.13
17 7 0.12
18 10 0.17
19 5 0.08
20 13 0.22
21 7 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TAATATTTAATAAATAA
Found at i:2683136 original size:3 final size:3
Alignment explanation
Indices: 2683121--2683167 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
2683111 ATATATATAT
* * * *
2683121 ATA ATA ATT ATA ATA ATA ATT ATA ATA ATA ATA ATT TTA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
2683168 TAAAATGAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (3 bp):
ATA
Found at i:2683136 original size:12 final size:12
Alignment explanation
Indices: 2683116--2683152 Score: 65
Period size: 12 Copynumber: 3.0 Consensus size: 12
2683106 TATATATATA
2683116 TATATATAATAAT
1 TATA-ATAATAAT
2683129 TATAATAATAAT
1 TATAATAATAAT
2683141 TATAATAATAAT
1 TATAATAATAAT
2683153 AATTTTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 20 0.83
13 4 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
TATAATAATAAT
Found at i:2683139 original size:15 final size:15
Alignment explanation
Indices: 2683130--2683167 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
2683120 TATAATAATT
2683130 ATAATAATAATTATA
1 ATAATAATAATTATA
*
2683145 ATAATAATAATTTTA
1 ATAATAATAATTATA
2683160 ATAATAAT
1 ATAATAAT
2683168 TAAAATGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATAATAATTATA
Found at i:2683144 original size:27 final size:27
Alignment explanation
Indices: 2683092--2683167 Score: 70
Period size: 27 Copynumber: 2.8 Consensus size: 27
2683082 TATTTAATAA
2683092 ATAAT-ATATATATATATATATATATATAT
1 ATAATAAT-TATATATA-ATA-ATATATAT
2683121 ATAATAATTATA-ATAATAAT-TATAAT
1 ATAATAATTATATATAATAATATAT-AT
*
2683147 AATAATAATTTTA-ATAATAAT
1 -ATAATAATTATATATAATAAT
2683168 TAAAATGAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
25 3 0.07
26 4 0.09
27 22 0.51
28 3 0.07
29 9 0.21
30 2 0.05
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (27 bp):
ATAATAATTATATATAATAATATATAT
Found at i:2683464 original size:23 final size:23
Alignment explanation
Indices: 2683438--2683506 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 23
2683428 CACCACAGCT
*
2683438 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* ** * *
2683461 CGTAGAATTGCATTGTAGTGCCC
1 CGTAGAAATGCACCGAAGTGCCA
* *
2683484 CTTAGAAATGTACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
2683507 TAAAATATAT
Statistics
Matches: 33, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:2683924 original size:2 final size:2
Alignment explanation
Indices: 2683917--2683976 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
2683907 AATCATATGA
2683917 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2683959 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
2683977 CTTATGCAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2687585 original size:2 final size:2
Alignment explanation
Indices: 2687578--2687605 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2687568 AATATGAAGA
2687578 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2687606 TAATCTTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2695099 original size:24 final size:25
Alignment explanation
Indices: 2695053--2695108 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
2695043 ATTCAAAAAT
* * *
2695053 AAGTATTTTTTTCATCTAGGTATTTG
1 AAGTA-TTTTTTCATCTAAGTATCTA
*
2695079 AAGTATTTTTTGAT-TAAGTATCTA
1 AAGTATTTTTTCATCTAAGTATCTA
2695103 AAGTAT
1 AAGTAT
2695109 ATTAAAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 13 0.50
25 8 0.31
26 5 0.19
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.50
Consensus pattern (25 bp):
AAGTATTTTTTCATCTAAGTATCTA
Found at i:2697480 original size:19 final size:17
Alignment explanation
Indices: 2697457--2697506 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 17
2697447 AAAAATACTC
2697457 AAATTATAATAAAAATTT
1 AAATTATAATAAAAA-TT
*
2697475 ATAATTATAATTATAAATT
1 A-AATTATAA-TAAAAATT
2697494 AAATATATAATAA
1 AAAT-TATAATAA
2697507 TATTTTTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
18 6 0.22
19 16 0.59
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATTATAATAAAAATT
Found at i:2699192 original size:22 final size:20
Alignment explanation
Indices: 2699167--2699207 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
2699157 GTGGAAAAAT
2699167 ATTTTGAAAATATTAATATATG
1 ATTTTG-AAATATTAA-ATATG
*
2699189 ATTTTGGAATATTAAATAT
1 ATTTTGAAATATTAAATAT
2699208 TTGTTTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 8 0.44
22 6 0.33
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (20 bp):
ATTTTGAAATATTAAATATG
Found at i:2702088 original size:24 final size:24
Alignment explanation
Indices: 2702043--2702088 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
2702033 ATAGGCCGAC
* * *
2702043 ATGAGAAATGTTCATTTCTGAGTT
1 ATGAGAAAAGTACATTGCTGAGTT
*
2702067 ATGAGAAAAGTACATTGGTGAG
1 ATGAGAAAAGTACATTGCTGAG
2702089 GCTCATACCG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.33
Consensus pattern (24 bp):
ATGAGAAAAGTACATTGCTGAGTT
Found at i:2709049 original size:14 final size:15
Alignment explanation
Indices: 2709023--2709051 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2709013 ACAGAAAACT
2709023 TTTGAAGGAAGCACA
1 TTTGAAGGAAGCACA
2709038 TTTGAA-GAAGCACA
1 TTTGAAGGAAGCACA
2709052 AGACTCATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (15 bp):
TTTGAAGGAAGCACA
Found at i:2709532 original size:19 final size:19
Alignment explanation
Indices: 2709508--2709554 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
2709498 ATTGATTATG
2709508 TTAGCTCATGCATTCATCT
1 TTAGCTCATGCATTCATCT
2709527 TTAGCTCATGCATTCATCT
1 TTAGCTCATGCATTCATCT
2709546 TTAGCTCAT
1 TTAGCTCAT
2709555 CTTAGCTCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.43
Consensus pattern (19 bp):
TTAGCTCATGCATTCATCT
Found at i:2711165 original size:9 final size:10
Alignment explanation
Indices: 2711142--2711167 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
2711132 AATTAAAATA
2711142 AAAAATAATC
1 AAAAATAATC
2711152 AAAAATAATC
1 AAAAATAATC
2711162 AAAAAT
1 AAAAAT
2711168 TAAAGAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.19
Consensus pattern (10 bp):
AAAAATAATC
Found at i:2712483 original size:21 final size:21
Alignment explanation
Indices: 2712457--2712508 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
2712447 TTGAAAAGGA
2712457 AGTATCGATACTCACCCATAG
1 AGTATCGATACTCACCCATAG
2712478 AGTATCGATACTCACCCATAG
1 AGTATCGATACTCACCCATAG
2712499 AGTATCGATA
1 AGTATCGATA
2712509 ATGTTGGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (21 bp):
AGTATCGATACTCACCCATAG
Found at i:2716158 original size:37 final size:37
Alignment explanation
Indices: 2716091--2716162 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
2716081 CTCTAAATTA
* *
2716091 ACCTAAGGTTGGGATATTATTAGTTGAAGGTAAATAG
1 ACCTAAGGTTGGGATATTATCAGATGAAGGTAAATAG
2716128 ACCTAAGGTTGGGATATTATCAGGAT-AAGGTAAAT
1 ACCTAAGGTTGGGATATTATCA-GATGAAGGTAAAT
2716163 TCATTATAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 30 0.94
38 2 0.06
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (37 bp):
ACCTAAGGTTGGGATATTATCAGATGAAGGTAAATAG
Found at i:2722610 original size:8 final size:8
Alignment explanation
Indices: 2722588--2724527 Score: 2289
Period size: 8 Copynumber: 244.8 Consensus size: 8
2722578 TTTAATTAAT
*
2722588 ATACATAT
1 ATACATAC
2722596 ATACATAC
1 ATACATAC
*
2722604 ATGCATAC
1 ATACATAC
*
2722612 ATGCATAC
1 ATACATAC
*
2722620 ATGCATAC
1 ATACATAC
* *
2722628 ATGCATCC
1 ATACATAC
* *
2722636 ATGCATCC
1 ATACATAC
* *
2722644 ATGCATCC
1 ATACATAC
* *
2722652 ATGCATAT
1 ATACATAC
*
2722660 ATACATAT
1 ATACATAC
*
2722668 ATACATAT
1 ATACATAC
*
2722676 ATACATAT
1 ATACATAC
* *
2722684 ATCCATGC
1 ATACATAC
* *
2722692 ATCCATGC
1 ATACATAC
* *
2722700 ATCCATGC
1 ATACATAC
* *
2722708 ATCCATGC
1 ATACATAC
*
2722716 ATACATGC
1 ATACATAC
* *
2722724 ATCCATGC
1 ATACATAC
*
2722732 ATATATAC
1 ATACATAC
*
2722740 ATATATAC
1 ATACATAC
2722748 ATACATAC
1 ATACATAC
*
2722756 ATACATAT
1 ATACATAC
2722764 ATACATAC
1 ATACATAC
2722772 ATACATAC
1 ATACATAC
2722780 ATACATAC
1 ATACATAC
*
2722788 ATGCATAC
1 ATACATAC
*
2722796 ATACATCC
1 ATACATAC
*
2722804 ATGCATAC
1 ATACATAC
*
2722812 ATACATCC
1 ATACATAC
*
2722820 ATGCATAC
1 ATACATAC
*
2722828 ATGCATAC
1 ATACATAC
2722836 ATACATAC
1 ATACATAC
*
2722844 ATGCATAC
1 ATACATAC
2722852 ATACATAC
1 ATACATAC
* *
2722860 ACATATAC
1 ATACATAC
* *
2722868 ACAAATAC
1 ATACATAC
*
2722876 ACACATAC
1 ATACATAC
*
2722884 ACACATAC
1 ATACATAC
*
2722892 ACACATAC
1 ATACATAC
*
2722900 ACACATAC
1 ATACATAC
*
2722908 ACACATAC
1 ATACATAC
*
2722916 ACACATAC
1 ATACATAC
* *
2722924 ACACATGC
1 ATACATAC
** *
2722932 ATGTATGC
1 ATACATAC
** *
2722940 ATGTATGC
1 ATACATAC
** *
2722948 ATGTATGC
1 ATACATAC
**
2722956 ATGTATAC
1 ATACATAC
2722964 ATACATAC
1 ATACATAC
2722972 ATACATAC
1 ATACATAC
*
2722980 ATACATCC
1 ATACATAC
2722988 ATACAT--
1 ATACATAC
*
2722994 ATACATCC
1 ATACATAC
*
2723002 ATGCATAC
1 ATACATAC
*
2723010 ATACATCC
1 ATACATAC
*
2723018 ATGCATAC
1 ATACATAC
2723026 ATACATAC
1 ATACATAC
*
2723034 ATGCATAC
1 ATACATAC
** *
2723042 ATGTATGC
1 ATACATAC
*
2723050 ATGCATAC
1 ATACATAC
*
2723058 ATGCATAC
1 ATACATAC
** *
2723066 ATGTATGC
1 ATACATAC
*
2723074 ATGCATAC
1 ATACATAC
*
2723082 ATGCATAC
1 ATACATAC
*
2723090 ATGCATAC
1 ATACATAC
**
2723098 ATGTATAC
1 ATACATAC
**
2723106 ATGTATAC
1 ATACATAC
*
2723114 ATACATGC
1 ATACATAC
2723122 ATACATAC
1 ATACATAC
2723130 ATACATAC
1 ATACATAC
*
2723138 ATACATAT
1 ATACATAC
* *
2723146 ATACTTGC
1 ATACATAC
2723154 ATACATAC
1 ATACATAC
* *
2723162 ATCCATGC
1 ATACATAC
*
2723170 ATACATAT
1 ATACATAC
* *
2723178 ATCCATGC
1 ATACATAC
2723186 ATACATAC
1 ATACATAC
2723194 ATACATAC
1 ATACATAC
2723202 ATACATAC
1 ATACATAC
2723210 ATACATAC
1 ATACATAC
2723218 ATACATAC
1 ATACATAC
2723226 ATACATAC
1 ATACATAC
2723234 ATACATAC
1 ATACATAC
2723242 ATACATAC
1 ATACATAC
2723250 ATACATAC
1 ATACATAC
2723258 ATACATAC
1 ATACATAC
2723266 ATACATAC
1 ATACATAC
2723274 ATACATAC
1 ATACATAC
2723282 ATACATAC
1 ATACATAC
2723290 ATACATAC
1 ATACATAC
2723298 ATACATAC
1 ATACATAC
2723306 ATACATAC
1 ATACATAC
2723314 ATACATAC
1 ATACATAC
2723322 ATACATAC
1 ATACATAC
2723330 ATACATAC
1 ATACATAC
2723338 ATACATAC
1 ATACATAC
2723346 ATACATAC
1 ATACATAC
2723354 ATACATAC
1 ATACATAC
2723362 ATACATAC
1 ATACATAC
2723370 ATACATAC
1 ATACATAC
2723378 ATACATAC
1 ATACATAC
2723386 ATACATAC
1 ATACATAC
2723394 ATACATAC
1 ATACATAC
2723402 ATACATAC
1 ATACATAC
2723410 ATACAT--
1 ATACATAC
2723416 ATACATAC
1 ATACATAC
2723424 ATACAT--
1 ATACATAC
2723430 ATACATAC
1 ATACATAC
2723438 ATACATAC
1 ATACATAC
2723446 ATACATAC
1 ATACATAC
2723454 ATACATAC
1 ATACATAC
2723462 ATACATAC
1 ATACATAC
2723470 ATACATAC
1 ATACATAC
2723478 ATACATAC
1 ATACATAC
2723486 ATACATAC
1 ATACATAC
2723494 ATACATAC
1 ATACATAC
2723502 ATACATAC
1 ATACATAC
2723510 ATACATAC
1 ATACATAC
2723518 ATACATAC
1 ATACATAC
2723526 ATACATAC
1 ATACATAC
2723534 ATACATAC
1 ATACATAC
2723542 ATACATAC
1 ATACATAC
2723550 ATACATAC
1 ATACATAC
2723558 ATACATAC
1 ATACATAC
2723566 ATACATAC
1 ATACATAC
2723574 ATACATAC
1 ATACATAC
2723582 ATACATAC
1 ATACATAC
2723590 ATACATAC
1 ATACATAC
2723598 ATACATAC
1 ATACATAC
2723606 ATACATAC
1 ATACATAC
2723614 ATACATAC
1 ATACATAC
2723622 ATACATAC
1 ATACATAC
2723630 ATACATAC
1 ATACATAC
2723638 ATACATAC
1 ATACATAC
2723646 ATACAT-C
1 ATACATAC
*
2723653 TATCCATAC
1 -ATACATAC
2723662 AT--ATAC
1 ATACATAC
* *
2723668 ATCCATGC
1 ATACATAC
*
2723676 ATACATAT
1 ATACATAC
* *
2723684 ATCCATGC
1 ATACATAC
2723692 ATACATAC
1 ATACATAC
2723700 ATACATAC
1 ATACATAC
2723708 ATACATAC
1 ATACATAC
*
2723716 ATGCATAC
1 ATACATAC
2723724 ATACATAC
1 ATACATAC
2723732 ATACATAC
1 ATACATAC
*
2723740 ATATATAC
1 ATACATAC
* *
2723748 ATCCATGC
1 ATACATAC
*
2723756 ATACATGC
1 ATACATAC
*
2723764 ATACATGC
1 ATACATAC
*
2723772 ATACATGC
1 ATACATAC
*
2723780 ATACATGC
1 ATACATAC
*
2723788 ATACATGC
1 ATACATAC
*
2723796 ATACATGC
1 ATACATAC
*
2723804 ATACATGC
1 ATACATAC
*
2723812 ATACATGC
1 ATACATAC
*
2723820 ATACATGC
1 ATACATAC
*
2723828 ATACATGC
1 ATACATAC
*
2723836 ATACATGC
1 ATACATAC
*
2723844 ATACATGC
1 ATACATAC
*
2723852 ATACATGC
1 ATACATAC
*
2723860 ATACATGC
1 ATACATAC
*
2723868 ATACATGC
1 ATACATAC
*
2723876 ATACATGC
1 ATACATAC
*
2723884 ATACATGC
1 ATACATAC
*
2723892 ATACATGC
1 ATACATAC
*
2723900 ATACATGC
1 ATACATAC
*
2723908 ATACATGC
1 ATACATAC
2723916 ATACAT--
1 ATACATAC
2723922 ATACATAC
1 ATACATAC
2723930 ATACATAC
1 ATACATAC
*
2723938 ATACATAT
1 ATACATAC
2723946 ATACAT--
1 ATACATAC
*
2723952 ATATATAC
1 ATACATAC
2723960 ATACATAC
1 ATACATAC
2723968 ATACATAC
1 ATACATAC
*
2723976 ATATATAC
1 ATACATAC
2723984 ATACATAC
1 ATACATAC
2723992 ATACATAC
1 ATACATAC
*
2724000 ATACATAT
1 ATACATAC
2724008 ATACATAC
1 ATACATAC
*
2724016 ATGCATAC
1 ATACATAC
2724024 ATACATAC
1 ATACATAC
*
2724032 ATGCATAC
1 ATACATAC
*
2724040 ATACATGC
1 ATACATAC
*
2724048 ATATATAC
1 ATACATAC
* *
2724056 ATCCATGC
1 ATACATAC
*
2724064 ATACATAT
1 ATACATAC
* * *
2724072 GTCCATGC
1 ATACATAC
*
2724080 ATACATAT
1 ATACATAC
* *
2724088 ATCCATGC
1 ATACATAC
*
2724096 ATACAAAC
1 ATACATAC
2724104 ATACATAC
1 ATACATAC
2724112 ATACATAC
1 ATACATAC
2724120 ATACATAC
1 ATACATAC
2724128 ATACATAC
1 ATACATAC
2724136 ATACATAC
1 ATACATAC
* *
2724144 ATATATAT
1 ATACATAC
2724152 ATACATAC
1 ATACATAC
2724160 ATACATAC
1 ATACATAC
* *
2724168 ATATATAT
1 ATACATAC
2724176 ATACATAC
1 ATACATAC
2724184 ATACATAC
1 ATACATAC
2724192 ATACATAC
1 ATACATAC
*
2724200 ATATATAC
1 ATACATAC
2724208 ATACATAC
1 ATACATAC
2724216 ATACATAC
1 ATACATAC
2724224 ATACATAC
1 ATACATAC
2724232 ATACATAC
1 ATACATAC
2724240 ATACATAC
1 ATACATAC
2724248 ATACAT--
1 ATACATAC
*
2724254 ATATATAC
1 ATACATAC
2724262 ATACATAC
1 ATACATAC
*
2724270 ATACATAT
1 ATACATAC
*
2724278 ATACATAT
1 ATACATAC
*
2724286 ATATATAC
1 ATACATAC
2724294 ATACATAC
1 ATACATAC
*
2724302 ATACATAT
1 ATACATAC
2724310 ATACATAC
1 ATACATAC
2724318 ATACATAC
1 ATACATAC
2724326 ATACAT--
1 ATACATAC
2724332 ATACATAC
1 ATACATAC
*
2724340 ATGCATAC
1 ATACATAC
2724348 ATACATAC
1 ATACATAC
*
2724356 ATGCATAC
1 ATACATAC
*
2724364 ATACATGC
1 ATACATAC
*
2724372 ATATATAC
1 ATACATAC
* *
2724380 ATCCATGC
1 ATACATAC
*
2724388 ATACATAT
1 ATACATAC
* * *
2724396 GTCCATGC
1 ATACATAC
*
2724404 ATACATAT
1 ATACATAC
* *
2724412 ATCCATGC
1 ATACATAC
*
2724420 ATACAAAC
1 ATACATAC
2724428 ATACATAC
1 ATACATAC
2724436 ATACATAC
1 ATACATAC
2724444 ATACATAC
1 ATACATAC
2724452 ATACATAC
1 ATACATAC
2724460 ATACATAC
1 ATACATAC
2724468 ATACATAC
1 ATACATAC
2724476 ATACATAC
1 ATACATAC
2724484 ATACATAC
1 ATACATAC
2724492 ATACATAC
1 ATACATAC
2724500 ATACATAC
1 ATACATAC
2724508 ATACATAC
1 ATACATAC
2724516 AT--ATAC
1 ATACATAC
2724522 ATACAT
1 ATACAT
2724528 TATTCATTTA
Statistics
Matches: 1736, Mismatches: 176, Indels: 40
0.89 0.09 0.02
Matches are distributed among these distances:
6 52 0.03
7 1 0.00
8 1682 0.97
9 1 0.00
ACGTcount: A:0.45, C:0.24, G:0.04, T:0.27
Consensus pattern (8 bp):
ATACATAC
Found at i:2722893 original size:6 final size:6
Alignment explanation
Indices: 2722874--2722928 Score: 56
Period size: 6 Copynumber: 9.2 Consensus size: 6
2722864 ATACACAAAT
* * * * * *
2722874 ACACAC ATACAC ACATAC ACACAT ACACAC ATACAC ACATAC ACACAT
1 ACACAC ACACAC ACACAC ACACAC ACACAC ACACAC ACACAC ACACAC
2722922 ACACAC A
1 ACACAC A
2722929 TGCATGTATG
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.51, C:0.38, G:0.00, T:0.11
Consensus pattern (6 bp):
ACACAC
Found at i:2724856 original size:26 final size:25
Alignment explanation
Indices: 2724826--2724886 Score: 88
Period size: 27 Copynumber: 2.4 Consensus size: 25
2724816 TAAGGTGAGA
*
2724826 TAAAACATAAAATATCATAATTACT
1 TAAAACATAAAATATCATAAATACT
2724851 TCAAAACATTAAAATATCATAAATACT
1 T-AAAACA-TAAAATATCATAAATACT
2724878 TAAAA-ATAA
1 TAAAACATAA
2724887 TACATATAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
24 3 0.09
25 2 0.06
26 10 0.30
27 18 0.55
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (25 bp):
TAAAACATAAAATATCATAAATACT
Found at i:2725468 original size:20 final size:20
Alignment explanation
Indices: 2725396--2725468 Score: 119
Period size: 20 Copynumber: 3.6 Consensus size: 20
2725386 TTTTCCTAAT
*
2725396 TCGCAATGCAAATACGTAAA
1 TCGCAATGCGAATACGTAAA
2725416 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
2725436 TCACAATGAGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
2725456 TCGCAATGCGAAT
1 TCGCAATGCGAAT
2725469 CTGACTATCG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:2725690 original size:22 final size:22
Alignment explanation
Indices: 2725665--2725729 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
2725655 GCGACATCCA
2725665 TCCCCATCTCCGACGAAATCAG
1 TCCCCATCTCCGACGAAATCAG
*
2725687 TCCCCATCTCCGACGATATCAG
1 TCCCCATCTCCGACGAAATCAG
* *
2725709 TCTCCATCTCCGGCGAAATCA
1 TCCCCATCTCCGACGAAATCA
2725730 TTCACGGTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.25, C:0.40, G:0.14, T:0.22
Consensus pattern (22 bp):
TCCCCATCTCCGACGAAATCAG
Found at i:2726129 original size:20 final size:20
Alignment explanation
Indices: 2726089--2726197 Score: 112
Period size: 20 Copynumber: 5.5 Consensus size: 20
2726079 TGCGATTCTT
* **
2726089 GCGTTGTGATAGTCAAATTC
1 GCGTTGCGATAGTCATTTTC
2726109 GCGTTGCGATAGTCATTTTC
1 GCGTTGCGATAGTCATTTTC
* **
2726129 GTGTTGCGATTTTCA-TTTC
1 GCGTTGCGATAGTCATTTTC
2726148 GCGTTGCGATAGTCATTTTC
1 GCGTTGCGATAGTCATTTTC
** **
2726168 ATGTTGCGATTTTCATTTTC
1 GCGTTGCGATAGTCATTTTC
*
2726188 GTGTTGCGAT
1 GCGTTGCGAT
2726198 TTTAAGTTTC
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
19 16 0.22
20 58 0.78
ACGTcount: A:0.16, C:0.17, G:0.24, T:0.44
Consensus pattern (20 bp):
GCGTTGCGATAGTCATTTTC
Found at i:2726159 original size:59 final size:59
Alignment explanation
Indices: 2726089--2726200 Score: 161
Period size: 59 Copynumber: 1.9 Consensus size: 59
2726079 TGCGATTCTT
* *
2726089 GCGTTGTGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGTGTTGCGATTTTCATTTC
1 GCGTTGCGATAGTCAAATTCACGTTGCGATAGTCATTTTCGTGTTGCGATTTTCATTTC
** * **
2726148 GCGTTGCGATAGTCATTTTCATGTTGCGATTTTCATTTTCGTGTTGCGATTTT
1 GCGTTGCGATAGTCAAATTCACGTTGCGATAGTCATTTTCGTGTTGCGATTTT
2726201 AAGTTTCAGA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
59 46 1.00
ACGTcount: A:0.15, C:0.16, G:0.23, T:0.46
Consensus pattern (59 bp):
GCGTTGCGATAGTCAAATTCACGTTGCGATAGTCATTTTCGTGTTGCGATTTTCATTTC
Found at i:2726160 original size:39 final size:39
Alignment explanation
Indices: 2726058--2726197 Score: 157
Period size: 39 Copynumber: 3.7 Consensus size: 39
2726048 CGATTCTGTC
*
2726058 GTTGCGATTTTCATTTCGCGTTGCGAT--TC---TT-GC
1 GTTGCGATTTTCATTTCGCGTTGCGATAGTCATTTTCGT
* ** *
2726091 GTTGTGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTC-ATTTCGCGTTGCGATAGTCATTTTCGT
*
2726131 GTTGCGATTTTCATTTCGCGTTGCGATAGTCATTTTCAT
1 GTTGCGATTTTCATTTCGCGTTGCGATAGTCATTTTCGT
*
2726170 GTTGCGATTTTCATTTTCGTGTTGCGAT
1 GTTGCGATTTTCA-TTTCGCGTTGCGAT
2726198 TTTAAGTTTC
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
33 9 0.10
34 14 0.16
36 2 0.02
39 40 0.45
40 23 0.26
ACGTcount: A:0.14, C:0.17, G:0.24, T:0.45
Consensus pattern (39 bp):
GTTGCGATTTTCATTTCGCGTTGCGATAGTCATTTTCGT
Found at i:2726207 original size:20 final size:20
Alignment explanation
Indices: 2726106--2726200 Score: 120
Period size: 20 Copynumber: 4.8 Consensus size: 20
2726096 GATAGTCAAA
* **
2726106 TTCGCGTTGCGATAGTCATT
1 TTCGTGTTGCGATTTTCATT
2726126 TTCGTGTTGCGATTTTCA-T
1 TTCGTGTTGCGATTTTCATT
* **
2726145 TTCGCGTTGCGATAGTCATT
1 TTCGTGTTGCGATTTTCATT
*
2726165 TTCATGTTGCGATTTTCATT
1 TTCGTGTTGCGATTTTCATT
2726185 TTCGTGTTGCGATTTT
1 TTCGTGTTGCGATTTT
2726201 AAGTTTCAGA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
19 16 0.25
20 47 0.75
ACGTcount: A:0.13, C:0.17, G:0.22, T:0.48
Consensus pattern (20 bp):
TTCGTGTTGCGATTTTCATT
Found at i:2728101 original size:20 final size:20
Alignment explanation
Indices: 2728076--2728233 Score: 156
Period size: 20 Copynumber: 7.5 Consensus size: 20
2728066 AGAATAGTTT
*
2728076 ACTATCACAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
2728096 ACTATCGCAACGCGAAAATG
1 ACTATCGCAATGCGAAAATG
* *
2728116 ACTATCGCAACGAGAAAATCG
1 ACTATCGCAATGCGAAAAT-G
* **
2728137 CAACAACAAAATCGCAACACGAAAATG
1 -----AC--TATCGCAATGCGAAAATG
2728164 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
2728184 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
2728204 ACTATCGCAATGC-AAATTTG
1 ACTATCGCAATGCGAAA-ATG
2728224 ACTATCGCAA
1 ACTATCGCAA
2728234 CGAAAGAATC
Statistics
Matches: 119, Mismatches: 10, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
19 3 0.03
20 96 0.81
21 1 0.01
22 2 0.02
26 2 0.02
27 1 0.01
28 14 0.12
ACGTcount: A:0.43, C:0.23, G:0.16, T:0.18
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:2728161 original size:14 final size:15
Alignment explanation
Indices: 2728119--2728162 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
2728109 GAAAATGACT
*
2728119 ATCGCAACGA-GAAA
1 ATCGCAACAACGAAA
2728133 ATCGCAACAAC-AAA
1 ATCGCAACAACGAAA
2728147 ATCGCAAC-ACGAAA
1 ATCGCAACAACGAAA
2728161 AT
1 AT
2728163 GACTATCGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 2 0.07
14 25 0.93
ACGTcount: A:0.52, C:0.25, G:0.14, T:0.09
Consensus pattern (15 bp):
ATCGCAACAACGAAA
Found at i:2728245 original size:34 final size:37
Alignment explanation
Indices: 2728147--2728257 Score: 122
Period size: 40 Copynumber: 2.9 Consensus size: 37
2728137 CAACAACAAA
*
2728147 ATCGCAACACGAAAATGACTATCGCAATGCGAAAATGACT
1 ATCGCAA-GCGAAAATGAC-ATCGCAATGC-AAAATGACT
*
2728187 ATCGCAATGCGAAAATGACTATCGCAATGCAAATTTGACT
1 ATCGCAA-GCGAAAATGAC-ATCGCAATGCAAA-ATGACT
2728227 ATCGCAA-CG-AAA-GA-ATCGCAATGCAAAATGA
1 ATCGCAAGCGAAAATGACATCGCAATGCAAAATGA
2728258 AAATCGATTG
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
33 3 0.05
34 13 0.20
36 2 0.03
37 3 0.05
38 2 0.03
39 3 0.05
40 40 0.61
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (37 bp):
ATCGCAAGCGAAAATGACATCGCAATGCAAAATGACT
Found at i:2728302 original size:20 final size:20
Alignment explanation
Indices: 2728279--2728461 Score: 218
Period size: 20 Copynumber: 9.3 Consensus size: 20
2728269 GATTCTCTCA
**
2728279 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCATTTTCGCG
2728299 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCG
2728319 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCG
2728339 TTGCGATAGTCATTTTCGCGCG
1 TTGCGATAGTCATTTT--CGCG
* *
2728361 TTGCGAT--TC----CCTCG
1 TTGCGATAGTCATTTTCGCG
* *
2728375 TTGCGATAGTCAAATTT-GCA
1 TTGCGATAGTC-ATTTTCGCG
*
2728395 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCG
*
2728415 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCG
2728435 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCG
2728455 TTGCGAT
1 TTGCGAT
2728462 TTTAAGTTTC
Statistics
Matches: 144, Mismatches: 9, Indels: 20
0.83 0.05 0.12
Matches are distributed among these distances:
14 10 0.07
16 2 0.01
19 4 0.03
20 117 0.81
22 11 0.08
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCG
Found at i:2728429 original size:96 final size:94
Alignment explanation
Indices: 2728265--2728462 Score: 324
Period size: 96 Copynumber: 2.1 Consensus size: 94
2728255 TGAAAATCGA
* * *
2728265 TTGCGATTCTCTCATTGCGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGCGTTGCGATAGTC
1 TTGCGATTCCCTCATTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCGCATTGCGATAGTC
*
2728330 ATTTTCGCGTTGCGATAGTCATTTTCGCGCG
66 ATTTTCGCATTGCGATAGTCATTTT--CGCG
* *
2728361 TTGCGATTCCCTCGTTGCGATAGTCAAATTTGCATTGCGATAGTCATTTTCGCATTGCGATAGTC
1 TTGCGATTCCCTCATTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCGCATTGCGATAGTC
2728426 ATTTTCGCATTGCGATAGTCATTTTCGCG
66 ATTTTCGCATTGCGATAGTCATTTTCGCG
2728455 TTGCGATT
1 TTGCGATT
2728463 TTAAGTTTCA
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
94 12 0.12
96 84 0.88
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (94 bp):
TTGCGATTCCCTCATTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCGCATTGCGATAGTC
ATTTTCGCATTGCGATAGTCATTTTCGCG
Found at i:2729036 original size:21 final size:21
Alignment explanation
Indices: 2728945--2729041 Score: 79
Period size: 21 Copynumber: 4.6 Consensus size: 21
2728935 GACTCACCTG
* *
2728945 TCATCATTCAAGAGGCCTCCCC
1 TCATCGTTCAAGAGGCC-CCTC
*
2728967 T-ATCGTTCAAGAGGCCCCTA
1 TCATCGTTCAAGAGGCCCCTC
** *
2728987 TCATCCCTCAAGAGTCCCCTC
1 TCATCGTTCAAGAGGCCCCTC
* * * *
2729008 CCACCGTTCAAGAGGCCACTG
1 TCATCGTTCAAGAGGCCCCTC
*
2729029 TCATCGTTGAAGA
1 TCATCGTTCAAGA
2729042 TATCCCTCCC
Statistics
Matches: 57, Mismatches: 17, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
20 3 0.05
21 53 0.93
22 1 0.02
ACGTcount: A:0.24, C:0.36, G:0.18, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCCCTC
Found at i:2730457 original size:14 final size:14
Alignment explanation
Indices: 2730438--2730473 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
2730428 ATTGTTTAAT
2730438 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
2730452 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
2730466 TGATTTGT
1 TGATTTGT
2730474 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:2730726 original size:33 final size:33
Alignment explanation
Indices: 2730675--2730764 Score: 126
Period size: 33 Copynumber: 2.7 Consensus size: 33
2730665 TTCGCGTTAC
*
2730675 GATTTTCATTTTCGCATTGTGATTCTCTCGTTGT
1 GATTTTCA-TTTCGCATTGCGATTCTCTCGTTGT
2730709 GATTTTCATTTCGCATTGCGATTCTCTCGTTGT
1 GATTTTCATTTCGCATTGCGATTCTCTCGTTGT
** *
2730742 GATAGTCATTTCCGCGTTGCGAT
1 GATTTTCATTT-CGCATTGCGAT
2730765 AGTCATTTCT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
33 33 0.65
34 18 0.35
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.47
Consensus pattern (33 bp):
GATTTTCATTTCGCATTGCGATTCTCTCGTTGT
Found at i:2730765 original size:20 final size:20
Alignment explanation
Indices: 2730736--2730809 Score: 105
Period size: 20 Copynumber: 3.7 Consensus size: 20
2730726 GCGATTCTCT
*
2730736 CGTTGTGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
2730756 CGTTGCGATAGTCATTTCTG
1 CGTTGCGATAGTCATTTCCG
*
2730776 TGTTGCGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
2730796 CGTTGCGATAGTCA
1 CGTTGCGATAGTCA
2730810 AATGAATGTC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
20 46 0.96
21 2 0.04
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.38
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:2734100 original size:20 final size:20
Alignment explanation
Indices: 2734075--2734138 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
2734065 AAATTCAGTA
2734075 TTGCGATAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCGCG
*
2734095 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
*
2734115 TTGCGATAGTCAGATTCGCG
1 TTGCGATAGTCAGAATCGCG
2734135 TTGC
1 TTGC
2734139 AATTTACGTA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCG
Found at i:2734151 original size:20 final size:20
Alignment explanation
Indices: 2734128--2734203 Score: 107
Period size: 20 Copynumber: 3.8 Consensus size: 20
2734118 CGATAGTCAG
*
2734128 ATTCGCGTTGCAATTTACGT
1 ATTCGCATTGCAATTTACGT
**
2734148 ATTCGCATTGCGTTTTACGT
1 ATTCGCATTGCAATTTACGT
*
2734168 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCAATTTACGT
2734188 ATTCGCATTGCGAATT
1 ATTCGCATTGC-AATT
2734204 ACGAAAATCG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
20 47 0.94
21 3 0.06
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41
Consensus pattern (20 bp):
ATTCGCATTGCAATTTACGT
Found at i:2734159 original size:40 final size:41
Alignment explanation
Indices: 2734115--2734200 Score: 106
Period size: 40 Copynumber: 2.1 Consensus size: 41
2734105 CAGAATCTCG
*
2734115 TTGCGATAGTCA-G-ATTCGCGTTGCAATTTACGTATTCGCA
1 TTGCGAT-GTCACGTATTCGCATTGCAATTTACGTATTCGCA
* * *
2734155 TTGCG-TTTTACGTATTCGCATTGCGATTTACGTATTCGCA
1 TTGCGATGTCACGTATTCGCATTGCAATTTACGTATTCGCA
2734195 TTGCGA
1 TTGCGA
2734201 ATTACGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
38 2 0.05
39 2 0.05
40 35 0.90
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (41 bp):
TTGCGATGTCACGTATTCGCATTGCAATTTACGTATTCGCA
Found at i:2734206 original size:40 final size:40
Alignment explanation
Indices: 2734128--2734206 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
2734118 CGATAGTCAG
* **
2734128 ATTCGCGTTGCAATTTACGTATTCGCATTGCGTTTTACGT
1 ATTCGCATTGCAATTTACGTATTCGCATTGCGAATTACGT
*
2734168 ATTCGCATTGCGATTTACGTATTCGCATTGCGAATTACG
1 ATTCGCATTGCAATTTACGTATTCGCATTGCGAATTACG
2734207 AAAATCGCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (40 bp):
ATTCGCATTGCAATTTACGTATTCGCATTGCGAATTACGT
Found at i:2734221 original size:21 final size:21
Alignment explanation
Indices: 2734197--2734242 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
2734187 TATTCGCATT
2734197 GCGAATTACGAAAATCGCAAC
1 GCGAATTACGAAAATCGCAAC
** *
2734218 GCGAATTTGGAAAATCGCAAT
1 GCGAATTACGAAAATCGCAAC
2734239 GCGA
1 GCGA
2734243 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (21 bp):
GCGAATTACGAAAATCGCAAC
Found at i:2737860 original size:21 final size:22
Alignment explanation
Indices: 2737835--2737880 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
2737825 GGTTTTGGTA
* * *
2737835 AAAAGATATTTAAA-TAATAAT
1 AAAAGAGAATTAAAGTAAAAAT
2737856 AAAAGAGAATTAAAGTAAAAAT
1 AAAAGAGAATTAAAGTAAAAAT
2737878 AAA
1 AAA
2737881 GAAAATATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (22 bp):
AAAAGAGAATTAAAGTAAAAAT
Found at i:2739570 original size:22 final size:19
Alignment explanation
Indices: 2739532--2739581 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
2739522 AATGCTTTTG
*
2739532 ATTTTTTTCTTTTTTTTCAC
1 ATTTTTTTCTTTGTTTTC-C
2739552 ATTTTTGTTGCTTTGTTTTCC
1 ATTTTT-TT-CTTTGTTTTCC
2739573 ATTTTTTTC
1 ATTTTTTTC
2739582 ATGTATTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 1 0.04
20 8 0.30
21 9 0.33
22 9 0.33
ACGTcount: A:0.08, C:0.14, G:0.06, T:0.72
Consensus pattern (19 bp):
ATTTTTTTCTTTGTTTTCC
Found at i:2758223 original size:25 final size:25
Alignment explanation
Indices: 2758195--2758242 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
2758185 GGTTATTGTG
2758195 AATTCAGAAGTCATTAAGGAACGCT
1 AATTCAGAAGTCATTAAGGAACGCT
2758220 AATTCAGAAGTCATTAAGGAACG
1 AATTCAGAAGTCATTAAGGAACG
2758243 TTATCGAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.23
Consensus pattern (25 bp):
AATTCAGAAGTCATTAAGGAACGCT
Found at i:2759962 original size:20 final size:21
Alignment explanation
Indices: 2759924--2759970 Score: 78
Period size: 20 Copynumber: 2.3 Consensus size: 21
2759914 TTGACAATAT
*
2759924 TTTTAAAATATTAAAATATAA
1 TTTTATAATATTAAAATATAA
2759945 TTTTATAATATT-AAATATAA
1 TTTTATAATATTAAAATATAA
2759965 TTTTAT
1 TTTTAT
2759971 TTTGATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTTATAATATTAAAATATAA
Found at i:2760245 original size:14 final size:16
Alignment explanation
Indices: 2760223--2760254 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
2760213 ATGTACTTAA
2760223 TTTATATTTATA-TAT
1 TTTATATTTATATTAT
2760238 TTTA-ATTTATATTAT
1 TTTATATTTATATTAT
2760253 TT
1 TT
2760255 AAAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTATATTTATATTAT
Found at i:2760389 original size:25 final size:22
Alignment explanation
Indices: 2760336--2760391 Score: 58
Period size: 25 Copynumber: 2.4 Consensus size: 22
2760326 TTAATAACAT
* *
2760336 ATTTAAAAATAAAAATTATTAT
1 ATTTAAAATTAAAAATTATTAA
*
2760358 ATATAAAATTAAAAAATATAATTAA
1 ATTTAAAATT-AAAAAT-T-ATTAA
2760383 ATTTAAAAT
1 ATTTAAAAT
2760392 ATTTTTAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 8 0.30
23 6 0.22
24 1 0.04
25 12 0.44
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
ATTTAAAATTAAAAATTATTAA
Found at i:2760536 original size:38 final size:37
Alignment explanation
Indices: 2760440--2760536 Score: 106
Period size: 38 Copynumber: 2.5 Consensus size: 37
2760430 GATTGATAGA
* *
2760440 GTGAAATAATTTAAGAGATTAATAATTTAGAATGTTGT
1 GTGAAATAATTTAAGA-ATTAAGAATTTAGAATATTGT
*
2760478 GTGAAATAATTTAATAAATTAAGAATTTAGAATATTAG-
1 GTGAAATAATTTAA-GAATTAAGAATTTAGAATATT-GT
* *
2760516 GATGAAATTATTTGAGAATTA
1 G-TGAAATAATTTAAGAATTA
2760537 GAAATAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
38 37 0.74
39 13 0.26
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.38
Consensus pattern (37 bp):
GTGAAATAATTTAAGAATTAAGAATTTAGAATATTGT
Found at i:2760563 original size:20 final size:22
Alignment explanation
Indices: 2760538--2760578 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
2760528 TGAGAATTAG
2760538 AAATAAAA-AATATA-ATATAA
1 AAATAAAATAATATATATATAA
2760558 AAATAAAATAATATATATATA
1 AAATAAAATAATATATATATA
2760579 TATATATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
21 6 0.32
22 5 0.26
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (22 bp):
AAATAAAATAATATATATATAA
Found at i:2762854 original size:47 final size:48
Alignment explanation
Indices: 2762803--2763151 Score: 271
Period size: 47 Copynumber: 7.5 Consensus size: 48
2762793 CTTTAATTTC
* *
2762803 AGTTATGACCA-CTTTTCATGCCTTAATATATATGTTCATTCATTTTT
1 AGTTATGACCATCCTTTCATGCCTTAATATATATGTTCATGCATTTTT
* * *
2762850 AGTTATGA-CATACTTTCATGCTTTAA-AGTATATGTTCATGTA-TTTT
1 AGTTATGACCATCCTTTCATGCCTTAATA-TATATGTTCATGCATTTTT
* * *
2762896 AATTATG-GCATCCTTTCATGCCTTAAT-TCATCCT-TTCATGCATTTTT
1 AGTTATGACCATCCTTTCATGCCTTAATAT-AT-ATGTTCATGCATTTTT
* * **
2762943 AGTTATG-GCATCCTTTCATGCCTTAATACATCCGTTCATGCATTTTT
1 AGTTATGACCATCCTTTCATGCCTTAATATATATGTTCATGCATTTTT
** *
2762990 AGTTATGGA--ATCCTTTCATGCCTTAATGCAT-TCGTTCAAGCATTTTT
1 AGTTAT-GACCATCCTTTCATGCCTTAATATATAT-GTTCATGCATTTTT
* * ** ** *
2763037 AGTTATGGA--ATCATTTCATCCCTTAATGCATCCGTTCAAGCATTTTT
1 AGTTAT-GACCATCCTTTCATGCCTTAATATATATGTTCATGCATTTTT
* ** * *
2763084 AGTTATG-GCATCCTTTCATGCCTTAATGCATCCT-TTCATGTATTTTT
1 AGTTATGACCATCCTTTCATGCCTTAATATAT-ATGTTCATGCATTTTT
*
2763131 AGTTATG-TCATCCTTTCATGC
1 AGTTATGACCATCCTTTCATGC
2763152 ATTTTTAGTT
Statistics
Matches: 261, Mismatches: 25, Indels: 32
0.82 0.08 0.10
Matches are distributed among these distances:
45 1 0.00
46 40 0.15
47 218 0.84
48 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (48 bp):
AGTTATGACCATCCTTTCATGCCTTAATATATATGTTCATGCATTTTT
Found at i:2763034 original size:94 final size:94
Alignment explanation
Indices: 2762816--2763151 Score: 417
Period size: 94 Copynumber: 3.6 Consensus size: 94
2762806 TATGACCACT
** ** * * * * *
2762816 TTTCATGCCTTAATATATATGTTCATTCATTTTTAGTTATGACATACTTTCATGCTTTAAAGTAT
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTT-AA-TAC
* *
2762881 AT--GTTCATGTA-TTTTAATTATGGCATCC
64 ATCCGTTCATGCATTTTTAGTTATGGCATCC
* *
2762909 TTTCATGCCTTAATTCATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATACAT
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATACAT
*
2762974 CCGTTCATGCATTTTTAGTTATGGAATCC
66 CCGTTCATGCATTTTTAGTTATGGCATCC
* * * * * *
2763003 TTTCATGCCTTAATGCATTCGTTCAAGCATTTTTAGTTATGGAATCATTTCATCCCTTAATGCAT
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATACAT
*
2763068 CCGTTCAAGCATTTTTAGTTATGGCATCC
66 CCGTTCATGCATTTTTAGTTATGGCATCC
* * *
2763097 TTTCATGCCTTAATGCATCCTTTCATGTATTTTTAGTTATGTCATCCTTTCATGC
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGC
2763152 ATTTTTAGTT
Statistics
Matches: 209, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
91 4 0.02
92 2 0.01
93 57 0.27
94 146 0.70
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.46
Consensus pattern (94 bp):
TTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATACAT
CCGTTCATGCATTTTTAGTTATGGCATCC
Found at i:2763100 original size:141 final size:140
Alignment explanation
Indices: 2762816--2763151 Score: 433
Period size: 141 Copynumber: 2.4 Consensus size: 140
2762806 TATGACCACT
* ** * * * *
2762816 TTTCATGCCTTAATATATATGTTCATTCATTTTTAGTTAT-GACATACTTTCATGCTTTAAAGTA
1 TTTCATGCCTTAATACATCCGTTCATGCATTTTTAGTTATGGA-ATCCTTTCATGCCTTAAAGCA
* * * * * * * *
2762880 TATGTTCATGTATTTTAATTATGGCATCCTTTCATGCCTTAATTCATCCTTTCATGCATTTTTAG
65 TATGTTCAAGCATTTTAATTATGGAATCATTTCATCCCTTAATGCATCCGTTCAAGCATTTTTAG
2762945 TTATGGCATCC
130 TTATGGCATCC
*
2762956 TTTCATGCCTTAATACATCCGTTCATGCATTTTTAGTTATGGAATCCTTTCATGCCTTAATGCAT
1 TTTCATGCCTTAATACATCCGTTCATGCATTTTTAGTTATGGAATCCTTTCATGCCTTAAAGCAT
*
2763021 -TCGTTCAAGCATTTTTAGTTATGGAATCATTTCATCCCTTAATGCATCCGTTCAAGCATTTTTA
66 AT-GTTCAAGCA-TTTTAATTATGGAATCATTTCATCCCTTAATGCATCCGTTCAAGCATTTTTA
2763085 GTTATGGCATCC
129 GTTATGGCATCC
* * * **
2763097 TTTCATGCCTTAATGCATCCTTTCATGTATTTTTAGTTATGTCATCCTTTCATGC
1 TTTCATGCCTTAATACATCCGTTCATGCATTTTTAGTTATGGAATCCTTTCATGC
2763152 ATTTTTAGTT
Statistics
Matches: 171, Mismatches: 22, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
139 1 0.01
140 61 0.36
141 109 0.64
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.46
Consensus pattern (140 bp):
TTTCATGCCTTAATACATCCGTTCATGCATTTTTAGTTATGGAATCCTTTCATGCCTTAAAGCAT
ATGTTCAAGCATTTTAATTATGGAATCATTTCATCCCTTAATGCATCCGTTCAAGCATTTTTAGT
TATGGCATCC
Found at i:2763191 original size:74 final size:74
Alignment explanation
Indices: 2763064--2763352 Score: 276
Period size: 74 Copynumber: 4.0 Consensus size: 74
2763054 ATCCCTTAAT
* * * * *
2763064 GCATCCGTTCAAGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGTATTT
1 GCATCCTTTCATGCATTTTTAGTTATGGCATCATTTCATACCTTAATGCATCCTTTCATGCATTT
2763129 TTAGTTATG
66 TTAGTTATG
* *
2763138 TCATCCTTTCATGCATTTTTAGTTATGGCATCATTTCATACCTTAATGGATCCTTTCATGCATTT
1 GCATCCTTTCATGCATTTTTAGTTATGGCATCATTTCATACCTTAATGCATCCTTTCATGCATTT
2763203 TTAGTTATG
66 TTAGTTATG
* ** ** ** * * *
2763212 GCATCCTTTCATGCCTTAAT-GCATCCTTTCATGCATTT-TTA-GTT-ATGGCATTCTTTCATGC
1 GCATCCTTTCATGCATTTTTAG--TTATGGCAT-CATTTCATACCTTAAT-GCATCCTTTCATGC
2763273 ATTTTTAGTTATG
62 ATTTTTAGTTATG
* * * *
2763286 GTATCCTTTCATGC---CTTA---AT-GCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTT
1 GCATCCTTTCATGCATTTTTAGTTATGGCATCATTTCATACCTTAATGCATCCTTTCATGCATTT
2763344 TTAGTTATG
66 TTAGTTATG
2763353 AATTCAGTTT
Statistics
Matches: 178, Mismatches: 29, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
65 4 0.02
66 4 0.02
67 29 0.16
68 2 0.01
71 1 0.01
73 3 0.02
74 123 0.69
75 7 0.04
76 5 0.03
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (74 bp):
GCATCCTTTCATGCATTTTTAGTTATGGCATCATTTCATACCTTAATGCATCCTTTCATGCATTT
TTAGTTATG
Found at i:2763271 original size:47 final size:47
Alignment explanation
Indices: 2763139--2763352 Score: 253
Period size: 47 Copynumber: 4.6 Consensus size: 47
2763129 TTAGTTATGT
* *
2763139 CATCCTTTCATGCATTTTTAGTTATGGCATCATTTCATACCTTAATG
1 CATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATG
*
2763186 GATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATG
1 CATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATG
* *
2763233 CATCCTTTCATGCATTTTTAGTTATGGCATTCTTTCATGCATTTTTAGTTATGG
1 CATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGC---CTTA---AT-G
* *
2763287 TATCCTTTCATGC---CTTA---AT-GCATCCTTTCATGCCTTAATG
1 CATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATG
2763327 CATCCTTTCATGCATTTTTAGTTATG
1 CATCCTTTCATGCATTTTTAGTTATG
2763353 AATTCAGTTT
Statistics
Matches: 141, Mismatches: 12, Indels: 28
0.78 0.07 0.15
Matches are distributed among these distances:
40 13 0.09
41 2 0.01
43 3 0.02
44 3 0.02
46 2 0.01
47 95 0.67
48 2 0.01
50 3 0.02
51 3 0.02
53 2 0.01
54 13 0.09
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (47 bp):
CATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATG
Found at i:2763313 original size:20 final size:20
Alignment explanation
Indices: 2763288--2763339 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
2763278 TAGTTATGGT
2763288 ATCCTTTCATGCCTTAATGC
1 ATCCTTTCATGCCTTAATGC
2763308 ATCCTTTCATGCCTTAATGC
1 ATCCTTTCATGCCTTAATGC
2763328 ATCCTTTCATGC
1 ATCCTTTCATGC
2763340 ATTTTTAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.31, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCCTTTCATGCCTTAATGC
Found at i:2763317 original size:121 final size:121
Alignment explanation
Indices: 2763017--2763319 Score: 489
Period size: 121 Copynumber: 2.5 Consensus size: 121
2763007 ATGCCTTAAT
* * * * *
2763017 GCATTCGTTCAAGCATTTTTAGTTATGGAATCATTTCATCCCTTAATGCATCCGTTCAAGCATTT
1 GCATTCTTTCATGCATTTTTAGTTATGGAATCATTTCATACCTTAATGCATCCTTTCATGCATTT
*
2763082 TTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGTATTTTTAGTTATG
66 TTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGTTATG
* * * *
2763138 TCATCCTTTCATGCATTTTTAGTTATGGCATCATTTCATACCTTAATGGATCCTTTCATGCATTT
1 GCATTCTTTCATGCATTTTTAGTTATGGAATCATTTCATACCTTAATGCATCCTTTCATGCATTT
2763203 TTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGTTATG
66 TTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGTTATG
* * *
2763259 GCATTCTTTCATGCATTTTTAGTTATGGTATCCTTTCATGCCTTAATGCATCCTTTCATGC
1 GCATTCTTTCATGCATTTTTAGTTATGGAATCATTTCATACCTTAATGCATCCTTTCATGC
2763320 CTTAATGCAT
Statistics
Matches: 166, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
121 166 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (121 bp):
GCATTCTTTCATGCATTTTTAGTTATGGAATCATTTCATACCTTAATGCATCCTTTCATGCATTT
TTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGTTATG
Found at i:2768800 original size:22 final size:22
Alignment explanation
Indices: 2768753--2768801 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
2768743 ACACCCTTAA
2768753 TTTT-AACTACTTTTCATCTTG
1 TTTTCAACTACTTTTCATCTTG
* *
2768774 ATTTCAACTATCTTTTC-TTTTG
1 TTTTCAACTA-CTTTTCATCTTG
2768796 TTTTCA
1 TTTTCA
2768802 TTCCGTAACC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 3 0.13
22 14 0.61
23 6 0.26
ACGTcount: A:0.18, C:0.18, G:0.04, T:0.59
Consensus pattern (22 bp):
TTTTCAACTACTTTTCATCTTG
Found at i:2772030 original size:3 final size:3
Alignment explanation
Indices: 2772022--2772056 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
2772012 TTTTAATTTT
2772022 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
2772057 CAAATTACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:2773588 original size:30 final size:30
Alignment explanation
Indices: 2773431--2773711 Score: 105
Period size: 30 Copynumber: 9.5 Consensus size: 30
2773421 TTATTTATAA
* * **
2773431 TTACTTTTTTAGTCCTTTAACTTTCTACTT
1 TTACTATTTTAGTCCTTTAAGTTTCTGTTT
* * *
2773461 TTACTATTATAATCCCTTAA-TTTCTTGTTT
1 TTACTATTTTAGTCCTTTAAGTTTC-TGTTT
* * **
2773491 TCACTA-TTTAGTCTTTTAAGTGTT-TGTAA
1 TTACTATTTTAGTCCTTTAAGT-TTCTGTTT
* * *
2773520 TTACTGTTTTGAG-CCTTCAAGTTTCTTTTT
1 TTACTATTTT-AGTCCTTTAAGTTTCTGTTT
**
2773550 TTGGTATTTTAGTCCTTTAA-TTTCATGTTT
1 TTACTATTTTAGTCCTTTAAGTTTC-TGTTT
* ** *
2773580 TTACTA-TTTAGTCC-CTAAAATTCTATTT
1 TTACTATTTTAGTCCTTTAAGTTTCTGTTT
* * * *
2773608 TT-TTCATTTTAGTCCTTGAGGTTTCTATTT
1 TTACT-ATTTTAGTCCTTTAAGTTTCTGTTT
* * * **
2773638 TTAC-CTTTTAG-CTCTTTAACTTTTTGTAA
1 TTACTATTTTAGTC-CTTTAAGTTTCTGTTT
* * * * * *
2773667 TTATTGTGTTAGTCCTTTATGTTTCTATTA
1 TTACTATTTTAGTCCTTTAAGTTTCTGTTT
* *
2773697 TTATTATTCTAGTCC
1 TTACTATTTTAGTCC
2773712 CCAATGTATG
Statistics
Matches: 179, Mismatches: 56, Indels: 32
0.67 0.21 0.12
Matches are distributed among these distances:
27 1 0.01
28 11 0.06
29 65 0.36
30 97 0.54
31 5 0.03
ACGTcount: A:0.19, C:0.15, G:0.09, T:0.57
Consensus pattern (30 bp):
TTACTATTTTAGTCCTTTAAGTTTCTGTTT
Found at i:2777329 original size:24 final size:23
Alignment explanation
Indices: 2777298--2777360 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
2777288 AGAACCAATC
2777298 AAAACAAAGAGGAAAAAAAAGAAA
1 AAAACAAAGA-GAAAAAAAAGAAA
* * *
2777322 AAAACAAATAG-AAAAGAAGGAA
1 AAAACAAAGAGAAAAAAAAGAAA
*
2777344 AAATCAAAGA-AAAAAAA
1 AAAACAAAGAGAAAAAAA
2777361 TACAAGAAGC
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
22 22 0.69
23 1 0.03
24 9 0.28
ACGTcount: A:0.78, C:0.05, G:0.14, T:0.03
Consensus pattern (23 bp):
AAAACAAAGAGAAAAAAAAGAAA
Found at i:2778599 original size:38 final size:35
Alignment explanation
Indices: 2778555--2778683 Score: 116
Period size: 35 Copynumber: 3.6 Consensus size: 35
2778545 CAAAATGTCA
* *
2778555 TCTCGCTAGAGACAGCTTCTTTTGAAAAACAAATTTTG
1 TCTCGCTTGAGACAG-TT-TTCT-AAAAACAAATTTTG
*
2778593 TCTCGCTTGAGACAGTTTTCTAAAAATAAATTTTG
1 TCTCGCTTGAGACAGTTTTCTAAAAACAAATTTTG
* * * *
2778628 TCTTGCTTGAGAC-GATTTCTTTCAAAACAAATTTCG
1 TCTCGCTTGAGACAG-TTT-TCTAAAAACAAATTTTG
* * *
2778664 ACTCGCTTAAGACATTTTTC
1 TCTCGCTTGAGACAGTTTTC
2778684 CTTTGAGATA
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
34 1 0.01
35 29 0.39
36 29 0.39
37 2 0.03
38 14 0.19
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (35 bp):
TCTCGCTTGAGACAGTTTTCTAAAAACAAATTTTG
Found at i:2778792 original size:36 final size:35
Alignment explanation
Indices: 2778719--2778819 Score: 107
Period size: 36 Copynumber: 2.8 Consensus size: 35
2778709 TTTCACATGC
**
2778719 AACAAA-GTTGATCTCACTTGAGATCGTTTTCTCAAA
1 AACAAATGTTG-TCTCACTTGAGA-CAATTTCTCAAA
* * *
2778755 AACTAACT-TTTTCTCGCTTGAGACAATTTCTCTAAA
1 AAC-AAATGTTGTCTCACTTGAGACAATTTCTC-AAA
2778791 AACAAATGTTGTCTCACTTGAGACAATTT
1 AACAAATGTTGTCTCACTTGAGACAATTT
2778820 TCCCAATTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
35 10 0.19
36 39 0.74
37 4 0.08
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (35 bp):
AACAAATGTTGTCTCACTTGAGACAATTTCTCAAA
Found at i:2779039 original size:35 final size:36
Alignment explanation
Indices: 2778955--2779048 Score: 122
Period size: 35 Copynumber: 2.6 Consensus size: 36
2778945 GAGAAAAATA
* * *
2778955 TTTGAGTATGTTT-CTTTGGAAACAAAATTAACCATC
1 TTTGAGTATGTTTCCCTT-GAAACAAAATCAAACATC
2778991 TTTGAGTATGTTTCCCTTGAAACAAAA-CAAACATC
1 TTTGAGTATGTTTCCCTTGAAACAAAATCAAACATC
2779026 TTTGAG-ATCGTTTCCCTTGAAAC
1 TTTGAGTAT-GTTTCCCTTGAAAC
2779049 GAATTTTGCC
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
34 2 0.04
35 26 0.49
36 22 0.42
37 3 0.06
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (36 bp):
TTTGAGTATGTTTCCCTTGAAACAAAATCAAACATC
Found at i:2779259 original size:28 final size:27
Alignment explanation
Indices: 2779205--2779268 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 27
2779195 GACAGTTACT
**
2779205 TTTGAAACAAATCGTTGAGTCTGTTTC
1 TTTGAAACAAATCGTTGAGTCAATTTC
*
2779232 ATTTGAAACAAATCTTTGAGTCAATTTC
1 -TTTGAAACAAATCGTTGAGTCAATTTC
2779260 TCTTGAAAC
1 T-TTGAAAC
2779269 CATAATCCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 1 0.03
28 31 0.97
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (27 bp):
TTTGAAACAAATCGTTGAGTCAATTTC
Found at i:2779569 original size:134 final size:134
Alignment explanation
Indices: 2779276--2779608 Score: 370
Period size: 134 Copynumber: 2.5 Consensus size: 134
2779266 AACCATAATC
* * *
2779276 CCTAAAGATGGCCAACCATCCTCATCAAGTAGGAACCGTGTCATCTCCCGA-CTAAACCTCCTCA
1 CCTAAAGATGGCCAAACATCCTCATCACGTA-GAACCGTGTCATCCCCCGACCTAAACCTCCTCA
* * * * **
2779340 TCACGTAGGAGTCGTGTCACCCCTAGATAACCAAACGTCCTCATCACGTAGGAACTGAGTTATCA
65 TCACGCAGGAGCCATGTCACCCCTAGATAACCAAACGTCCTCATCACATAGGAACCAAGTTATCA
2779405 CCACT
130 CCACT
* ** * * * *
2779410 CTTAAAGATGGCCAGTCGTCCTCATCACGTAGAAACCGTGTCATCCCCCGACCT-GAGCTTCTCA
1 CCTAAAGATGGCCAAACATCCTCATCACGTAG-AACCGTGTCATCCCCCGACCTAAACCTCCTCA
* * *
2779474 TCACGCAGGAGCCATGTCACCCCTGGATAACCAACCGTCCTCATCGCATAGGAACCAAGTTATCA
65 TCACGCAGGAGCCATGTCACCCCTAGATAACCAAACGTCCTCATCACATAGGAACCAAGTTATCA
*
2779539 CCATT
130 CCACT
* * * * *
2779544 CCTAAAGATGGCCAAA-ACTCTTCATCACATATGAGCCGTGTCAT-CCCCGACC-AGATCTCCTC
1 CCTAAAGATGGCCAAACA-TCCTCATCACGTA-GAACCGTGTCATCCCCCGACCTAAACCTCCTC
2779606 ATC
64 ATC
2779609 GCGTATGAGA
Statistics
Matches: 166, Mismatches: 28, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
133 19 0.11
134 144 0.87
135 3 0.02
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.22
Consensus pattern (134 bp):
CCTAAAGATGGCCAAACATCCTCATCACGTAGAACCGTGTCATCCCCCGACCTAAACCTCCTCAT
CACGCAGGAGCCATGTCACCCCTAGATAACCAAACGTCCTCATCACATAGGAACCAAGTTATCAC
CACT
Found at i:2779705 original size:49 final size:49
Alignment explanation
Indices: 2779629--2779726 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
2779619 CGTGTCGCCT
2779629 TTAGACGACTAGACCTCTTCATCACATATGAGCAGTGTCGTCCCAAACA
1 TTAGACGACTAGACCTCTTCATCACATATGAGCAGTGTCGTCCCAAACA
* *
2779678 TTAGACGACTAGACCTCTTCATTACATATGAGCAGTGTCGTCCCCAACA
1 TTAGACGACTAGACCTCTTCATCACATATGAGCAGTGTCGTCCCAAACA
2779727 ACAAACATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (49 bp):
TTAGACGACTAGACCTCTTCATCACATATGAGCAGTGTCGTCCCAAACA
Found at i:2779882 original size:16 final size:16
Alignment explanation
Indices: 2779863--2779908 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
2779853 GTCTGGGTCT
2779863 TTTTTATTTAATT-TTA
1 TTTTTATTT-ATTATTA
*
2779879 TTTTAATTTATTATTA
1 TTTTTATTTATTATTA
*
2779895 TTATTA-TTATTATT
1 TTTTTATTTATTATT
2779909 CAAATTACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 11 0.42
16 15 0.58
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTATTTATTATTA
Found at i:2785114 original size:77 final size:77
Alignment explanation
Indices: 2784987--2785140 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
2784977 GTAATTATTA
2784987 AGTTTTTTCACAAAACAAATCAACTTGTTCTATGCATACTTGTATCGTTTATAGGTGCATTTTAG
1 AGTTTTTTCACAAAACAAATCAACTTGTTCTATGCATACTTGTATCGTTTATAGGTGCATTTTAG
2785052 AGGCTGATAAGC
66 AGGCTGATAAGC
2785064 AGTTTTTTCACAAAACAAATCAACTTGTTCTATGCATACTTGTATCGTTTATAGGTGCATTTTAG
1 AGTTTTTTCACAAAACAAATCAACTTGTTCTATGCATACTTGTATCGTTTATAGGTGCATTTTAG
2785129 AGGCTGATAAGC
66 AGGCTGATAAGC
2785141 TTATTGAGAA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.38
Consensus pattern (77 bp):
AGTTTTTTCACAAAACAAATCAACTTGTTCTATGCATACTTGTATCGTTTATAGGTGCATTTTAG
AGGCTGATAAGC
Found at i:2785472 original size:17 final size:17
Alignment explanation
Indices: 2785441--2785488 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
2785431 GACAATTTAA
*
2785441 TATGTTAT-TTATTATT
1 TATGTTATAATATTATT
2785457 TATGTTATAATATTATT
1 TATGTTATAATATTATT
*
2785474 TACTATTATAA-ATTA
1 TA-TGTTATAATATTA
2785489 AATTTATGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 8 0.29
17 13 0.46
18 7 0.25
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.58
Consensus pattern (17 bp):
TATGTTATAATATTATT
Found at i:2791418 original size:16 final size:17
Alignment explanation
Indices: 2791388--2791419 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
2791378 ATCTCAAAAT
2791388 TAAATAGTCCATGAGTG
1 TAAATAGTCCATGAGTG
2791405 TAAATAGT-CATGAGT
1 TAAATAGTCCATGAGT
2791420 ATAATCTACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (17 bp):
TAAATAGTCCATGAGTG
Found at i:2795266 original size:16 final size:16
Alignment explanation
Indices: 2795247--2795278 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
2795237 TCAATGATTT
2795247 AGAAAAATAAATTTTG
1 AGAAAAATAAATTTTG
2795263 AGAAAAATAAATTTTG
1 AGAAAAATAAATTTTG
2795279 GTTTGAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.31
Consensus pattern (16 bp):
AGAAAAATAAATTTTG
Found at i:2801560 original size:23 final size:22
Alignment explanation
Indices: 2801493--2801569 Score: 79
Period size: 21 Copynumber: 3.5 Consensus size: 22
2801483 CCATAAACAG
*
2801493 GTATCGATACCCTCTTG-CTAG-
1 GTATCGATACCCTCTTGAAT-GT
* *
2801514 GTATCGATA-CTTCTTCAATGT
1 GTATCGATACCCTCTTGAATGT
2801535 GTATCGATACCCTCTTTGAATGT
1 GTATCGATACCCTC-TTGAATGT
*
2801558 GTATTGATACCC
1 GTATCGATACCC
2801570 CTCAATGGGT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
20 6 0.13
21 19 0.41
22 3 0.07
23 18 0.39
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (22 bp):
GTATCGATACCCTCTTGAATGT
Found at i:2802282 original size:12 final size:12
Alignment explanation
Indices: 2802267--2802308 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
2802257 GATCAAACCG
2802267 ACCTCCAAACTC
1 ACCTCCAAACTC
*
2802279 ACCTCCAAACCC
1 ACCTCCAAACTC
2802291 ACCTCCAAA-TC
1 ACCTCCAAACTC
2802302 GACCTCC
1 -ACCTCC
2802309 TATTCCACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 1 0.04
12 26 0.96
ACGTcount: A:0.31, C:0.52, G:0.02, T:0.14
Consensus pattern (12 bp):
ACCTCCAAACTC
Found at i:2802317 original size:24 final size:24
Alignment explanation
Indices: 2802260--2802308 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
2802250 TCTAGTCGAT
*
2802260 CAAACCGACCTCCAAACTCACCTC
1 CAAACCCACCTCCAAACTCACCTC
2802284 CAAACCCACCTCCAAA-TCGACCTC
1 CAAACCCACCTCCAAACTC-ACCTC
2802308 C
1 C
2802309 TATTCCACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 2 0.09
24 21 0.91
ACGTcount: A:0.33, C:0.51, G:0.04, T:0.12
Consensus pattern (24 bp):
CAAACCCACCTCCAAACTCACCTC
Found at i:2806917 original size:30 final size:29
Alignment explanation
Indices: 2806881--2806993 Score: 138
Period size: 30 Copynumber: 3.8 Consensus size: 29
2806871 TTAAATATAT
2806881 TTTTATTTTTTATCTTAACTTAAAAATAAA
1 TTTTA-TTTTTATCTTAACTTAAAAATAAA
*
2806911 TTTTATTTTTTATCTTAACTTAAAAAATACA
1 TTTTA-TTTTTATCTTAACTT-AAAAATAAA
* * *
2806942 TTTCATTCTTATTTTAACTTAAAAA-AATA
1 TTTTATTTTTATCTTAACTTAAAAATAA-A
*
2806971 TTTTAGTTTTATCTTAACTTAAA
1 TTTTATTTTTATCTTAACTTAAA
2806994 GATATGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
28 1 0.01
29 25 0.35
30 34 0.47
31 12 0.17
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.52
Consensus pattern (29 bp):
TTTTATTTTTATCTTAACTTAAAAATAAA
Found at i:2807004 original size:29 final size:28
Alignment explanation
Indices: 2806888--2807017 Score: 127
Period size: 30 Copynumber: 4.4 Consensus size: 28
2806878 TATTTTTATT
2806888 TTTTATCTTAACTTAAAAATAA-ATTTTA
1 TTTTATCTTAACTTAAAAA-AATATTTTA
* *
2806916 TTTTTTATCTTAACTTAAAAAATACATTTCA
1 --TTTTATCTTAACTTAAAAAA-ATATTTTA
*
2806947 TTCTTATTTTAACTTAAAAAAATATTTTA
1 TT-TTATCTTAACTTAAAAAAATATTTTA
* *
2806976 GTTTTATCTTAACTTAAAGATATGATTTATA
1 -TTTTATCTTAACTTAAAAAAAT-ATTT-TA
2807007 TTTTATTCTTA
1 TTTTA-TCTTA
2807018 TAAAATTTTA
Statistics
Matches: 86, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
29 26 0.30
30 48 0.56
31 12 0.14
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (28 bp):
TTTTATCTTAACTTAAAAAAATATTTTA
Found at i:2807080 original size:28 final size:29
Alignment explanation
Indices: 2807032--2807231 Score: 194
Period size: 29 Copynumber: 6.8 Consensus size: 29
2807022 ATTTTAAAAT
* *
2807032 TAAGATAAAAATAAAAGATATTTTGTAGC
1 TAAGATAAAAATAAAATATATTTTGTAAC
*
2807061 TAAGAT-AAAATAAAATATATTTTTGTAGC
1 TAAGATAAAAATAAAATATA-TTTTGTAAC
* *
2807090 TAAGAT-AAAATAAAATATATTTTTTAAT
1 TAAGATAAAAATAAAATATATTTTGTAAC
*
2807118 TAAGATAAAAATAAAATATATTTT-TAAT
1 TAAGATAAAAATAAAATATATTTTGTAAC
* *
2807146 TAAGATAAAAATAAAATATATATTTTTTATAAT
1 TAAGATAAAAAT-AAA-ATATA--TTTTGTAAC
* * *
2807179 TAAAAT-AAAATAAAATAT-TTTTTTATAA
1 TAAGATAAAAATAAAATATATTTTGTA-AC
*
2807207 TGAAGATAAGAATAAAATATATTTT
1 T-AAGATAAAAATAAAATATATTTT
2807232 TAAATTAAAA
Statistics
Matches: 151, Mismatches: 9, Indels: 20
0.84 0.05 0.11
Matches are distributed among these distances:
27 6 0.04
28 42 0.28
29 58 0.38
30 20 0.13
31 7 0.05
32 9 0.06
33 9 0.06
ACGTcount: A:0.54, C:0.01, G:0.07, T:0.39
Consensus pattern (29 bp):
TAAGATAAAAATAAAATATATTTTGTAAC
Found at i:2807172 original size:58 final size:58
Alignment explanation
Indices: 2807022--2807340 Score: 266
Period size: 57 Copynumber: 5.5 Consensus size: 58
2807012 TTCTTATAAA
* * * ** *
2807022 ATTTTAAAATTAAGATAAAAATAAAAGATAT-TTTGTAGCTAAGATAAAATAAAATAT
1 ATTTTATAATTAAGATAAAAATAAAATATATATTTTTAATTAAAATAAAATAAAATAT
* ** *
2807079 ATTTTTGTAGCTAAGAT-AAAATAAAATATAT-TTTTTAATTAAGATAAAAATAAAATAT
1 A-TTTTATAATTAAGATAAAAATAAAATATATATTTTTAATTAAAAT-AAAATAAAATAT
2807137 ATTTT-TAATTAAGATAAAAATAAAATATATATTTTTTATAATTAAAATAAAATAAAATATT
1 ATTTTATAATTAAGATAAAAATAAAATATATA--TTTT-TAATTAAAATAAAATAAAATA-T
* * * * *
2807198 TTTTTATAATGAAGATAAGAATAAAATATAT-TTTTAAATTAAAATAAAAT---GTAT
1 ATTTTATAATTAAGATAAAAATAAAATATATATTTTTAATTAAAATAAAATAAAATAT
* * * *
2807252 A-CTTA-AGTTAAGATAAGAATAAAATATATA-TTTTAAGTTAAAATAAGAATAAATTAT
1 ATTTTATAATTAAGATAAAAATAAAATATATATTTTTAA-TTAAAATAA-AATAAAATAT
* * *
2807309 -TTTTGATAATTTAAGGTAAGAATATAATATAT
1 ATTTT-ATAA-TTAAGATAAAAATAAAATATAT
2807341 TTAGTACTTT
Statistics
Matches: 217, Mismatches: 26, Indels: 35
0.78 0.09 0.13
Matches are distributed among these distances:
52 27 0.12
53 12 0.06
54 4 0.02
55 2 0.01
56 8 0.04
57 48 0.22
58 39 0.18
59 5 0.02
60 35 0.16
61 14 0.06
62 23 0.11
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.39
Consensus pattern (58 bp):
ATTTTATAATTAAGATAAAAATAAAATATATATTTTTAATTAAAATAAAATAAAATAT
Found at i:2807243 original size:23 final size:23
Alignment explanation
Indices: 2807217--2807302 Score: 66
Period size: 25 Copynumber: 3.4 Consensus size: 23
2807207 TGAAGATAAG
2807217 AATAAAATATATTTTTAAATTAA
1 AATAAAATATATTTTTAAATTAA
*
2807240 AATAAAATGTATACTTAAGTTAAGA-TAA
1 AATAAAA--TATA-TT--TTTAA-ATTAA
*
2807268 GAATAAAATATATATTTTAAGTTAA
1 -AATAAAATATAT-TTTTAAATTAA
2807293 AATAAGAATA
1 AATAA-AATA
2807303 AATTATTTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 18
0.70 0.04 0.25
Matches are distributed among these distances:
23 7 0.14
24 5 0.10
25 15 0.30
26 3 0.06
27 5 0.10
28 7 0.14
29 8 0.16
ACGTcount: A:0.56, C:0.01, G:0.07, T:0.36
Consensus pattern (23 bp):
AATAAAATATATTTTTAAATTAA
Found at i:2807272 original size:29 final size:30
Alignment explanation
Indices: 2807231--2807304 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
2807221 AAATATATTT
* *
2807231 TTAAATTAA-AATAAAATGTATA-CTTAAG
1 TTAAAATAAGAATAAAATATATATCTTAAG
* *
2807259 TTAAGATAAGAATAAAATATATATTTTAAG
1 TTAAAATAAGAATAAAATATATATCTTAAG
2807289 TTAAAATAAGAATAAA
1 TTAAAATAAGAATAAA
2807305 TTATTTTTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.18
29 12 0.31
30 20 0.51
ACGTcount: A:0.57, C:0.01, G:0.08, T:0.34
Consensus pattern (30 bp):
TTAAAATAAGAATAAAATATATATCTTAAG
Found at i:2807393 original size:30 final size:31
Alignment explanation
Indices: 2807359--2807418 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
2807349 TTAAGTTAAG
*
2807359 GATAT-ATGTAAAAAGTTAAAATAAAAATAT
1 GATATGATGTAAAAACTTAAAATAAAAATAT
* * *
2807389 GATATGTTTTTAAAACTTAAAATAAAAATA
1 GATATGATGTAAAAACTTAAAATAAAAATA
2807419 AAATATATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (31 bp):
GATATGATGTAAAAACTTAAAATAAAAATAT
Found at i:2807430 original size:31 final size:31
Alignment explanation
Indices: 2807369--2807430 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
2807359 GATATATGTA
* ** *
2807369 AAAAGTTAAAATAAAAATATGATATGTTTTT
1 AAAACTTAAAATAAAAATAAAATATATTTTT
2807400 AAAACTTAAAATAAAAATAAAATATATTTTT
1 AAAACTTAAAATAAAAATAAAATATATTTTT
2807431 TTGATTAAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (31 bp):
AAAACTTAAAATAAAAATAAAATATATTTTT
Found at i:2809274 original size:12 final size:12
Alignment explanation
Indices: 2809257--2809281 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2809247 TTGGGGTATC
2809257 GATAATGATAAG
1 GATAATGATAAG
2809269 GATAATGATAAG
1 GATAATGATAAG
2809281 G
1 G
2809282 CAGTATCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (12 bp):
GATAATGATAAG
Found at i:2817207 original size:24 final size:24
Alignment explanation
Indices: 2817179--2817297 Score: 107
Period size: 24 Copynumber: 5.0 Consensus size: 24
2817169 GAATATTTTA
* *
2817179 TCTGATTTCCGATTTGAATCCTGT
1 TCTGATTTCTGATTTGAATTCTGT
* * *
2817203 TCTGA-TACATGACTTGAATTCTAT
1 TCTGATTTC-TGATTTGAATTCTGT
* *
2817227 TATGATTTCTGATTTGGATTCTGT
1 TCTGATTTCTGATTTGAATTCTGT
*
2817251 TCTGATATCTGATTTGAATTCTGT
1 TCTGATTTCTGATTTGAATTCTGT
* * *
2817275 TTTGAATTT-TGTTTTGATTTCTG
1 TCTG-ATTTCTGATTTGAATTCTG
2817298 ATATCTCCGT
Statistics
Matches: 75, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
23 2 0.03
24 68 0.91
25 5 0.07
ACGTcount: A:0.19, C:0.13, G:0.17, T:0.51
Consensus pattern (24 bp):
TCTGATTTCTGATTTGAATTCTGT
Found at i:2817279 original size:12 final size:12
Alignment explanation
Indices: 2817216--2817297 Score: 67
Period size: 12 Copynumber: 6.8 Consensus size: 12
2817206 GATACATGAC
*
2817216 TTGAATTCTATT
1 TTGAATTCTGTT
* * *
2817228 ATGATTTCTGAT
1 TTGAATTCTGTT
*
2817240 TTGGATTCTGTT
1 TTGAATTCTGTT
* *
2817252 CTG-ATATCTGAT
1 TTGAAT-TCTGTT
2817264 TTGAATTCTGTT
1 TTGAATTCTGTT
*
2817276 TTGAATTTTGTT
1 TTGAATTCTGTT
*
2817288 TTGATTTCTG
1 TTGAATTCTG
2817298 ATATCTCCGT
Statistics
Matches: 53, Mismatches: 15, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
11 2 0.04
12 49 0.92
13 2 0.04
ACGTcount: A:0.18, C:0.09, G:0.17, T:0.56
Consensus pattern (12 bp):
TTGAATTCTGTT
Found at i:2817297 original size:48 final size:48
Alignment explanation
Indices: 2817181--2817272 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
2817171 ATATTTTATC
* * *
2817181 TGATTTCCGATTTGAATCCTGTTCTGATACATGACTTGAATTCTATTA
1 TGATTTCTGATTTGGATTCTGTTCTGATACATGACTTGAATTCTATTA
*
2817229 TGATTTCTGATTTGGATTCTGTTCTGATATC-TGATTTGAATTCT
1 TGATTTCTGATTTGGATTCTGTTCTGATA-CATGACTTGAATTCT
2817273 GTTTTGAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 38 0.97
49 1 0.03
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.48
Consensus pattern (48 bp):
TGATTTCTGATTTGGATTCTGTTCTGATACATGACTTGAATTCTATTA
Found at i:2819837 original size:27 final size:27
Alignment explanation
Indices: 2819807--2819866 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
2819797 GACTCGAACC
*
2819807 GAATACGATTTAAGTGATAAATTATGA
1 GAATACGATTTAAGCGATAAATTATGA
* *
2819834 GAATATGATTTAAGCGATAATTTATGA
1 GAATACGATTTAAGCGATAAATTATGA
2819861 GAATAC
1 GAATAC
2819867 TTCGGTTAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.43, C:0.05, G:0.18, T:0.33
Consensus pattern (27 bp):
GAATACGATTTAAGCGATAAATTATGA
Found at i:2822546 original size:23 final size:23
Alignment explanation
Indices: 2822503--2822547 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
2822493 TTAAGATGTA
* *
2822503 AATTTAATTTAATATATATATTT
1 AATTTAAATTAATATAAATATTT
2822526 AATTTAAATT-ATATAAAATATT
1 AATTTAAATTAATAT-AAATATT
2822548 AAGAATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AATTTAAATTAATATAAATATTT
Found at i:2832891 original size:7 final size:7
Alignment explanation
Indices: 2832879--2832907 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
2832869 TAAATTATCT
2832879 AAGCCTC
1 AAGCCTC
2832886 AAGCCTC
1 AAGCCTC
2832893 AAGCCTC
1 AAGCCTC
2832900 AAGCCTC
1 AAGCCTC
2832907 A
1 A
2832908 CCCAAATAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.41, G:0.14, T:0.14
Consensus pattern (7 bp):
AAGCCTC
Found at i:2833190 original size:235 final size:235
Alignment explanation
Indices: 2832907--2833434 Score: 564
Period size: 237 Copynumber: 2.2 Consensus size: 235
2832897 CTCAAGCCTC
* * *
2832907 ACCCAAATAGGTAATTCAAATGTACAAATTTTCCTTTGTGCCAACCTTG-CTTTTCTCTCT-TCT
1 ACCCAAATAGGTAATTCAAGTGTACAAACTTTCCTTTGTGCCAACCTTGACTTTTCTCTCTCCCT
* * * * * * **
2832970 TCT-GTA-G-ACGTGTTGTTGCCCTTTTTTTAGCAAAGCTTTCCTCGTTCCTTGGGTTAATAGGG
66 T-TGGTAGGAAC--GCTATTGCCCATTTCTTAGCAAAGCTTTCCTCCTTCCTTGAGCCAAT-GGG
* * * * * * *
2833032 -TGTTACTTTTTTGTGTACCACATTTGACTCCTTAGGAAACATATCTTGTCTTCGATTTGCACCC
127 ATGTTACCTTGTTGTGTACCACATTTGACTACTTAGGAAACAAACCTTATCTTCCATTTGCACCC
* * * * * *
2833096 AATATTGATAAGACAAATTGTCCTTGCCTCGATATACTCGTTCCTT
192 AACATTAAGAAGACAAATTGTCCTCGCCTCG--AGACTCATTCCTT
* * *
2833142 GCCCAAATAGGTAATTCAAGTGTACAAACTTTCCTTTGTGCCAACCTTGACTCTTCTTTCTCCCT
1 ACCCAAATAGGTAATTCAAGTGTACAAACTTTCCTTTGTGCCAACCTTGACTTTTCTCTCTCCCT
* *
2833207 TTGGTAGGAACGCTATTGCCCATTTCTTAGCAAAGTTTTCCTCCTTCCTTGAGCCGATGGGATGT
66 TTGGTAGGAACGCTATTGCCCATTTCTTAGCAAAGCTTTCCTCCTTCCTTGAGCCAATGGGATGT
* * * ** * **
2833272 TGCCTTGTTGTGTACCACCTTTGACTATTTAGGACCCAAACCTTATCTTCCATTTTCGTCCAACA
131 TACCTTGTTGTGTACCACATTTGACTACTTAGGAAACAAACCTTATCTTCCATTTGCACCCAACA
*
2833337 TTAAGAAGACAAATTGTCCTCGCCTCGAGCCTCATTCCTT
196 TTAAGAAGACAAATTGTCCTCGCCTCGAGACTCATTCCTT
* * * * **
2833377 ACCCAAAAAAGTAATTCCAGTGTACCAACTTTCCTTTGTGTTAACCTTGACTTTTCTC
1 ACCCAAATAGGTAATTCAAGTGTACAAACTTTCCTTTGTGCCAACCTTGACTTTTCTC
2833435 CATTTTGAAA
Statistics
Matches: 240, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
235 105 0.44
236 13 0.05
237 119 0.50
238 1 0.00
239 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (235 bp):
ACCCAAATAGGTAATTCAAGTGTACAAACTTTCCTTTGTGCCAACCTTGACTTTTCTCTCTCCCT
TTGGTAGGAACGCTATTGCCCATTTCTTAGCAAAGCTTTCCTCCTTCCTTGAGCCAATGGGATGT
TACCTTGTTGTGTACCACATTTGACTACTTAGGAAACAAACCTTATCTTCCATTTGCACCCAACA
TTAAGAAGACAAATTGTCCTCGCCTCGAGACTCATTCCTT
Found at i:2834588 original size:28 final size:28
Alignment explanation
Indices: 2834556--2834627 Score: 144
Period size: 28 Copynumber: 2.6 Consensus size: 28
2834546 ATTTGCGTTG
2834556 TATTGTTTATATCACTTTTTTTATTAAA
1 TATTGTTTATATCACTTTTTTTATTAAA
2834584 TATTGTTTATATCACTTTTTTTATTAAA
1 TATTGTTTATATCACTTTTTTTATTAAA
2834612 TATTGTTTATATCACT
1 TATTGTTTATATCACT
2834628 AAATTTTTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.28, C:0.08, G:0.04, T:0.60
Consensus pattern (28 bp):
TATTGTTTATATCACTTTTTTTATTAAA
Found at i:2834592 original size:14 final size:14
Alignment explanation
Indices: 2834575--2834621 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
2834565 TATCACTTTT
2834575 TTTATTAAATATTG
1 TTTATTAAATATTG
* * *
2834589 TTTATATCACT-TTT
1 TTTAT-TAAATATTG
2834603 TTTATTAAATATTG
1 TTTATTAAATATTG
2834617 TTTAT
1 TTTAT
2834622 ATCACTAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
13 3 0.12
14 19 0.76
15 3 0.12
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (14 bp):
TTTATTAAATATTG
Found at i:2835375 original size:20 final size:20
Alignment explanation
Indices: 2835338--2835376 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
2835328 CTTGCATGAA
* *
2835338 GCAGCAGTAATTGCTGCATG
1 GCAGCAATAATTACTGCATG
*
2835358 GCAGCAATAATTATTGCAT
1 GCAGCAATAATTACTGCAT
2835377 TCCTGCCTTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (20 bp):
GCAGCAATAATTACTGCATG
Found at i:2837999 original size:11 final size:11
Alignment explanation
Indices: 2837983--2838024 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
2837973 TTAAATTGAA
2837983 TTATTTATATT
1 TTATTTATATT
2837994 TTATTTATATT
1 TTATTTATATT
*
2838005 TTATCTTAT-TA
1 TTAT-TTATATT
2838016 TTATTTATA
1 TTATTTATA
2838025 AATAGTCGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 4 0.14
11 20 0.71
12 4 0.14
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTTATATT
Found at i:2838020 original size:16 final size:17
Alignment explanation
Indices: 2837982--2838024 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
2837972 TTTAAATTGA
*
2837982 ATTATTTATATTTTATT
1 ATTATTTATATCTTATT
2837999 -TATATTT-TATCTTATT
1 AT-TATTTATATCTTATT
2838015 ATTATTTATA
1 ATTATTTATA
2838025 AATAGTCGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTATTTATATCTTATT
Found at i:2838258 original size:16 final size:16
Alignment explanation
Indices: 2838237--2838310 Score: 85
Period size: 16 Copynumber: 4.4 Consensus size: 16
2838227 TCTTATTATT
2838237 ATTTATAAATAGTCGA
1 ATTTATAAATAGTCGA
* *
2838253 ATTTATTCAATTTAAATCGA
1 ATTTA-T-AA-AT-AGTCGA
*
2838273 ATTTATAAATAGTTGA
1 ATTTATAAATAGTCGA
2838289 ATTTATAAATAGTCGA
1 ATTTATAAATAGTCGA
2838305 ATTTAT
1 ATTTAT
2838311 TATTTATAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
16 30 0.62
17 2 0.04
18 4 0.08
19 2 0.04
20 10 0.21
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.43
Consensus pattern (16 bp):
ATTTATAAATAGTCGA
Done.