Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002890.1 Hibiscus syriacus cultivar Beakdansim tig00005974_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5046466
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 12 of 21
Found at i:2838319 original size:23 final size:23
Alignment explanation
Indices: 2838289--2838334 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
2838279 AAATAGTTGA
*
2838289 ATTTATAAATAGTCGAATTTATT
1 ATTTATAAATAGCCGAATTTATT
2838312 ATTTATAAATAGCCGAATTTATT
1 ATTTATAAATAGCCGAATTTATT
2838335 CTTTTTACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.46
Consensus pattern (23 bp):
ATTTATAAATAGCCGAATTTATT
Found at i:2838396 original size:17 final size:15
Alignment explanation
Indices: 2838362--2838401 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
2838352 GGAACCATGC
2838362 ATATTTAATATTATA
1 ATATTTAATATTATA
*
2838377 ATATTTAAGTTTTAATA
1 ATATTTAA-TATT-ATA
2838394 ATATTTAA
1 ATATTTAA
2838402 CATATTTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.36
16 3 0.14
17 11 0.50
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
ATATTTAATATTATA
Found at i:2839712 original size:19 final size:19
Alignment explanation
Indices: 2839690--2839728 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
2839680 ATTTTTAATC
* *
2839690 AAAATAAATAATTTATATT
1 AAAATAAAGAATTCATATT
*
2839709 AAAATAGAGAATTCATATT
1 AAAATAAAGAATTCATATT
2839728 A
1 A
2839729 CCTTCTGGCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (19 bp):
AAAATAAAGAATTCATATT
Found at i:2840914 original size:11 final size:11
Alignment explanation
Indices: 2840898--2840930 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
2840888 AATTGATTTG
2840898 AAGAAAGGAAA
1 AAGAAAGGAAA
2840909 AAGAAAGGAAA
1 AAGAAAGGAAA
2840920 AAGAAAGGAAA
1 AAGAAAGGAAA
2840931 GGAAGAAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (11 bp):
AAGAAAGGAAA
Found at i:2842541 original size:60 final size:60
Alignment explanation
Indices: 2842447--2842565 Score: 175
Period size: 60 Copynumber: 2.0 Consensus size: 60
2842437 TAGGATCATG
* * * * *
2842447 ACCACCTCCATAATTTAGATGGTCGCCGTCAAGAAAAGGTGAATTGGTTTGAGACGCATT
1 ACCACCTCCACAAATTAGATGGTCGCCGTAAAGAAAAGGTGAATTGGGTTGAGAAGCATT
* *
2842507 ACCACCTCCACAAATTATATGGTCGTCGTAAAGAAAAGGTGAATTGGGTTGAGAAGCAT
1 ACCACCTCCACAAATTAGATGGTCGCCGTAAAGAAAAGGTGAATTGGGTTGAGAAGCAT
2842566 GCAAGCTACA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (60 bp):
ACCACCTCCACAAATTAGATGGTCGCCGTAAAGAAAAGGTGAATTGGGTTGAGAAGCATT
Found at i:2843434 original size:23 final size:23
Alignment explanation
Indices: 2843407--2843452 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
2843397 ATGTAAAAAG
*
2843407 AATAAATTCAACTATTTATAAAT
1 AATAAATCCAACTATTTATAAAT
*
2843430 AATAAATCCGACTATTTATAAAT
1 AATAAATCCAACTATTTATAAAT
2843453 TTGATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (23 bp):
AATAAATCCAACTATTTATAAAT
Found at i:2848320 original size:15 final size:15
Alignment explanation
Indices: 2848299--2848352 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
2848289 GGGTAAAGTT
2848299 AAGAAGAAAGAAAGG
1 AAGAAGAAAGAAAGG
*
2848314 GAGAAGAAAGAAAGG
1 AAGAAGAAAGAAAGG
2848329 AAGAAGAAATG--AGG
1 AAGAAGAAA-GAAAGG
2848343 AAGAAGAAAG
1 AAGAAGAAAG
2848353 GGAGAAGAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
13 1 0.03
14 12 0.33
15 22 0.61
16 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.02
Consensus pattern (15 bp):
AAGAAGAAAGAAAGG
Found at i:2848322 original size:11 final size:13
Alignment explanation
Indices: 2848299--2848361 Score: 58
Period size: 15 Copynumber: 4.6 Consensus size: 13
2848289 GGGTAAAGTT
2848299 AAGAAGAAAGAAAGG
1 AAGAAGAAAG--AGG
*
2848314 GAGAAGAAAGAAAGG
1 AAGAAGAAAG--AGG
2848329 AAGAAGAAATGAGG
1 AAGAAGAAA-GAGG
2848343 AAGAAGAAAG-GG
1 AAGAAGAAAGAGG
2848355 -AGAAGAA
1 AAGAAGAA
2848362 GAGATCGGGT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
11 7 0.16
12 2 0.04
13 1 0.02
14 12 0.27
15 22 0.49
16 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.37, T:0.02
Consensus pattern (13 bp):
AAGAAGAAAGAGG
Found at i:2848359 original size:14 final size:13
Alignment explanation
Indices: 2848300--2848363 Score: 60
Period size: 14 Copynumber: 4.7 Consensus size: 13
2848290 GGTAAAGTTA
2848300 AGAAGAAAGAAAGGG
1 AGAAG-AAGAAA-GG
2848315 AGAAGAAAGAAA-G
1 AGAAG-AAGAAAGG
*
2848328 -GAAGAAGAAATG
1 AGAAGAAGAAAGG
2848340 AGGAAGAAGAAAGGG
1 A-GAAGAAGAAA-GG
2848355 AGAAGAAGA
1 AGAAGAAGA
2848364 GATCGGGTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.14
12 5 0.11
13 1 0.02
14 18 0.41
15 14 0.32
ACGTcount: A:0.61, C:0.00, G:0.38, T:0.02
Consensus pattern (13 bp):
AGAAGAAGAAAGG
Found at i:2848399 original size:21 final size:21
Alignment explanation
Indices: 2848375--2848415 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
2848365 ATCGGGTAAA
2848375 AGTTTGTTAGTTTAAATTATT
1 AGTTTGTTAGTTTAAATTATT
*
2848396 AGTTTGTTAGTTTAAGTTAT
1 AGTTTGTTAGTTTAAATTAT
2848416 ATATTATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.56
Consensus pattern (21 bp):
AGTTTGTTAGTTTAAATTATT
Found at i:2848489 original size:45 final size:47
Alignment explanation
Indices: 2848393--2848501 Score: 141
Period size: 50 Copynumber: 2.3 Consensus size: 47
2848383 AGTTTAAATT
*
2848393 ATTAGTTTGTTAGTTTAAGTTATATATTATATTATATAAAAAATTAGTTA
1 ATTAGTTTGTTAGTTTAAGTTATATATTATATTATAT---AAATCAGTTA
* *
2848443 ATTAGTTTCTTAGTTTAAGTTATATATTATA-TATAT-AATCATTTA
1 ATTAGTTTGTTAGTTTAAGTTATATATTATATTATATAAATCAGTTA
*
2848488 ATTTGTTTGTTAGT
1 ATTAGTTTGTTAGT
2848502 GTTTTAAACT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
45 19 0.35
49 5 0.09
50 30 0.56
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53
Consensus pattern (47 bp):
ATTAGTTTGTTAGTTTAAGTTATATATTATATTATATAAATCAGTTA
Found at i:2848895 original size:4 final size:4
Alignment explanation
Indices: 2848886--2848911 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
2848876 TATGTGTAAA
2848886 TTAG TTAG TTAG TTAG TTAG TTAG TT
1 TTAG TTAG TTAG TTAG TTAG TTAG TT
2848912 TATATTAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (4 bp):
TTAG
Found at i:2850027 original size:27 final size:27
Alignment explanation
Indices: 2849993--2850058 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
2849983 ACAGATGGAG
2849993 GCACAAAATATAAGGCACGGGGTTGGAT
1 GCACAAAATATAAGGCACGGGGTTGG-T
*
2850021 -CACAAAATAGAAGGCACGGGGTTGGT
1 GCACAAAATATAAGGCACGGGGTTGGT
2850047 GCACAACAATAT
1 GCACAA-AATAT
2850059 TAAAGAGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 1 0.03
27 29 0.85
28 4 0.12
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.17
Consensus pattern (27 bp):
GCACAAAATATAAGGCACGGGGTTGGT
Found at i:2850303 original size:60 final size:60
Alignment explanation
Indices: 2850197--2850312 Score: 187
Period size: 60 Copynumber: 1.9 Consensus size: 60
2850187 TTCATGGGAT
* * * *
2850197 CATGACCACCTCCACAAATTAGATGGTCGCCTTTAAGCAAAGGTGAATTGGGTTGAGACG
1 CATGACCACCTCCACAAATTAGATGGTCACCGTAAAGAAAAGGTGAATTGGGTTGAGACG
*
2850257 CATGACCACCTCCACAAATTAGATGGTCACCGTAAAGAAAATGTGAATTGGGTTGA
1 CATGACCACCTCCACAAATTAGATGGTCACCGTAAAGAAAAGGTGAATTGGGTTGA
2850313 AAAGCATGCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (60 bp):
CATGACCACCTCCACAAATTAGATGGTCACCGTAAAGAAAAGGTGAATTGGGTTGAGACG
Found at i:2850914 original size:65 final size:64
Alignment explanation
Indices: 2850789--2850921 Score: 162
Period size: 65 Copynumber: 2.1 Consensus size: 64
2850779 CCTTATTTCA
* * * *
2850789 AATGCATTTTGTGTATCGATGCACAACCATGCATCGATGCACTCTTGATTTTATTGAAACATCG
1 AATGCATTTTATGTATCGATGCACAACCATGCATCGATGCACTCTGGATCTTATTAAAACATCG
** *
2850853 AATGCATTTTATGTA-CTGATGCACAAACCATTTATCGATGCACTCCTGGCTCTT-TTAAAACAT
1 AATGCATTTTATGTATC-GATGCAC-AACCATGCATCGATGCACT-CTGGATCTTATTAAAACAT
2850916 CG
63 CG
2850918 AATG
1 AATG
2850922 TAATTAGTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
63 1 0.02
64 21 0.36
65 31 0.53
66 6 0.10
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (64 bp):
AATGCATTTTATGTATCGATGCACAACCATGCATCGATGCACTCTGGATCTTATTAAAACATCG
Found at i:2856695 original size:44 final size:44
Alignment explanation
Indices: 2856632--2856736 Score: 156
Period size: 44 Copynumber: 2.4 Consensus size: 44
2856622 TTTTATGCAC
* *
2856632 TATGCATCGATACACTATGAATGTGTACCGATGCATCCCTTGAA
1 TATGCATCGATACACTATGAAGGTGCACCGATGCATCCCTTGAA
* *
2856676 TATGCATTGATACACTATGAAGGTGCACCGATGCATGCCTTGAA
1 TATGCATCGATACACTATGAAGGTGCACCGATGCATCCCTTGAA
* *
2856720 TGTGTATCGATACACTA
1 TATGCATCGATACACTA
2856737 CGCAGTGCAT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 54 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (44 bp):
TATGCATCGATACACTATGAAGGTGCACCGATGCATCCCTTGAA
Found at i:2858555 original size:21 final size:21
Alignment explanation
Indices: 2858529--2858569 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
2858519 CCGCAAAGCA
* *
2858529 ATGGACAATCGATTCAATGTT
1 ATGGACAATAGACTCAATGTT
*
2858550 ATGGACGATAGACTCAATGT
1 ATGGACAATAGACTCAATGT
2858570 GCTTACTCGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (21 bp):
ATGGACAATAGACTCAATGTT
Found at i:2858730 original size:15 final size:15
Alignment explanation
Indices: 2858696--2858737 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
2858686 GTTTTAAAAC
2858696 ATTTTGAATATTTGG
1 ATTTTGAATATTTGG
* *
2858711 A-TTTGATTGTTTGG
1 ATTTTGAATATTTGG
2858725 ATTTTGAATATTT
1 ATTTTGAATATTT
2858738 TTTGGATGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.24, C:0.00, G:0.19, T:0.57
Consensus pattern (15 bp):
ATTTTGAATATTTGG
Found at i:2859514 original size:65 final size:65
Alignment explanation
Indices: 2859370--2859522 Score: 170
Period size: 65 Copynumber: 2.4 Consensus size: 65
2859360 CCTTATTTCG
* * * * * *
2859370 AATGCAT-TTTGTGTACCGATGCACAACCATGCATCGATGCACTCTTGATTTTATTGAAACATCG
1 AATGCATATTAGTGTACCGATGCACAACAATGCATCGATGCACTCTGGATCTTATTAAAACATCA
* *
2859434 AATGCATTTTA-TGTACCGATGCACAGACAATGCATCGATGCACTTCTGGCTCTT-TTAAAACAT
1 AATGCATATTAGTGTACCGATGCACA-ACAATGCATCGATGCAC-TCTGGATCTTATTAAAACAT
2859497 CA
64 CA
* *
2859499 AATGTA-ATTAGTGTACTGATGCAC
1 AATGCATATTAGTGTACCGATGCAC
2859523 CCCAAGTGTA
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
64 24 0.32
65 44 0.59
66 7 0.09
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (65 bp):
AATGCATATTAGTGTACCGATGCACAACAATGCATCGATGCACTCTGGATCTTATTAAAACATCA
Found at i:2860683 original size:17 final size:15
Alignment explanation
Indices: 2860661--2860699 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
2860651 TTAAATATGC
2860661 TAAATATTATTAAAACT
1 TAAATATTA-TAAAA-T
*
2860678 TAAATATTATAATAT
1 TAAATATTATAAAAT
2860693 TAAATAT
1 TAAATAT
2860700 GCATGCTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 4 0.19
17 9 0.43
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAATATTATAAAAT
Found at i:2860755 original size:23 final size:24
Alignment explanation
Indices: 2860722--2860771 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
2860712 GTGAAATGTA
*
2860722 AAAAGAATAAATTCGACTATTTAT
1 AAAAGAATAAATTAGACTATTTAT
*
2860746 AAAA-AATAAATTATACTATTTAT
1 AAAAGAATAAATTAGACTATTTAT
2860769 AAA
1 AAA
2860772 TTCAACTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.56, C:0.06, G:0.04, T:0.34
Consensus pattern (24 bp):
AAAAGAATAAATTAGACTATTTAT
Found at i:2860772 original size:16 final size:16
Alignment explanation
Indices: 2860751--2860789 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
2860741 TTTATAAAAA
2860751 ATAAATT-ATACTATTT
1 ATAAATTCA-ACTATTT
2860767 ATAAATTCAACTATTT
1 ATAAATTCAACTATTT
2860783 ATAAATT
1 ATAAATT
2860790 TGATTTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAAATTCAACTATTT
Found at i:2861056 original size:16 final size:18
Alignment explanation
Indices: 2861034--2861076 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 18
2861024 TTCGACTATT
*
2861034 TATAAATAAT-AATAAGA
1 TATAAATAATAAATAAAA
2861051 TA-AAAT-ATAAATAAAA
1 TATAAATAATAAATAAAA
2861067 TATAAATAAT
1 TATAAATAAT
2861077 TTAATTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 2 0.09
16 12 0.55
17 6 0.27
18 2 0.09
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
TATAAATAATAAATAAAA
Found at i:2861064 original size:11 final size:11
Alignment explanation
Indices: 2861034--2861075 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
2861024 TTCGACTATT
2861034 TATAAATAATAA
1 TATAAATAA-AA
*
2861046 TA-AGATAAAA
1 TATAAATAAAA
2861056 TATAAATAAAA
1 TATAAATAAAA
2861067 TATAAATAA
1 TATAAATAA
2861076 TTTAATTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
10 4 0.15
11 21 0.78
12 2 0.07
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (11 bp):
TATAAATAAAA
Found at i:2865463 original size:29 final size:31
Alignment explanation
Indices: 2865395--2865463 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 31
2865385 CGCTTTACTC
* * * *
2865395 CATGTAACCAAGCGAAGGTCGTCGTGTTCTC
1 CATGTGACCAAGCGAAGGTCGCCGTGTGCTA
**
2865426 CATACGACCAAG-G-AGGTCGCCGTGTGCTA
1 CATGTGACCAAGCGAAGGTCGCCGTGTGCTA
2865455 CATGTGACC
1 CATGTGACC
2865464 TTCATTCCAC
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
29 20 0.67
30 1 0.03
31 9 0.30
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (31 bp):
CATGTGACCAAGCGAAGGTCGCCGTGTGCTA
Found at i:2865694 original size:20 final size:20
Alignment explanation
Indices: 2865665--2865716 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
2865655 GGGTACGGTT
2865665 AAGAAGAAAGAAAGGAAAGG
1 AAGAAGAAAGAAAGGAAAGG
* *
2865685 AAGAATAAAGAAAGGCAAGG
1 AAGAAGAAAGAAAGGAAAGG
2865705 AAGAAG-AAGAAA
1 AAGAAGAAAGAAA
2865717 TGGAGAAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 6 0.21
20 23 0.79
ACGTcount: A:0.65, C:0.02, G:0.31, T:0.02
Consensus pattern (20 bp):
AAGAAGAAAGAAAGGAAAGG
Found at i:2865779 original size:21 final size:21
Alignment explanation
Indices: 2865754--2865796 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
2865744 TGTTAGTTTG
2865754 TTAGTTTGTTAGTTTAAATTA
1 TTAGTTTGTTAGTTTAAATTA
*
2865775 TTAGTTTGTTAGTTTAAGTTA
1 TTAGTTTGTTAGTTTAAATTA
2865796 T
1 T
2865797 ATTATATTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (21 bp):
TTAGTTTGTTAGTTTAAATTA
Found at i:2865788 original size:8 final size:8
Alignment explanation
Indices: 2865740--2865768 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
2865730 ATCGGGTAAA
2865740 AGTTTGTT
1 AGTTTGTT
2865748 AGTTTGTT
1 AGTTTGTT
2865756 AGTTTGTT
1 AGTTTGTT
2865764 AGTTT
1 AGTTT
2865769 AAATTATTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.24, T:0.62
Consensus pattern (8 bp):
AGTTTGTT
Found at i:2866122 original size:60 final size:60
Alignment explanation
Indices: 2865999--2866115 Score: 180
Period size: 60 Copynumber: 1.9 Consensus size: 60
2865989 ATGTAGCTTA
* * * * *
2865999 CATGCTTCTCAACCCAATTCACCTTTTCTTTACGGCGATCATCTAATTTGTAGAGGTGGT
1 CATGCGTCTCAACCCAATTCACCTTTGCTTGACGACGACCATCTAATTTGTAGAGGTGGT
*
2866059 CATGCGTCTCAACCCAATTCACCTTTGCTTGACGACGACCATCTAATTTGTGGAGGT
1 CATGCGTCTCAACCCAATTCACCTTTGCTTGACGACGACCATCTAATTTGTAGAGGT
2866116 TTTCATGATC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.33
Consensus pattern (60 bp):
CATGCGTCTCAACCCAATTCACCTTTGCTTGACGACGACCATCTAATTTGTAGAGGTGGT
Found at i:2867983 original size:46 final size:50
Alignment explanation
Indices: 2867933--2868031 Score: 143
Period size: 50 Copynumber: 2.1 Consensus size: 50
2867923 ACTAATTAAA
* *
2867933 TAATTAAATAAT-TTTTTTAT-ATAT-A-ATATAACTTAAATTAACAAAC
1 TAATTAAATAATGTTTTATATAATATAATATATAACTTAAACTAACAAAC
*
2867979 TAATTAACTAATGTTTTATATAATATAATATATAACTTAAACTAACAAAC
1 TAATTAAATAATGTTTTATATAATATAATATATAACTTAAACTAACAAAC
2868029 TAA
1 TAA
2868032 ATATAATATA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
46 11 0.24
47 7 0.15
48 4 0.09
49 1 0.02
50 23 0.50
ACGTcount: A:0.51, C:0.08, G:0.01, T:0.40
Consensus pattern (50 bp):
TAATTAAATAATGTTTTATATAATATAATATATAACTTAAACTAACAAAC
Found at i:2868117 original size:11 final size:11
Alignment explanation
Indices: 2868101--2868170 Score: 85
Period size: 11 Copynumber: 6.6 Consensus size: 11
2868091 ACCCGATCTC
*
2868101 TTCTTCTCCCT
1 TTCTTCTTCCT
2868112 TTCTTCTTCCT
1 TTCTTCTTCCT
*
2868123 TTC--CTTTCT
1 TTCTTCTTCCT
2868132 TTCTTCTTCCT
1 TTCTTCTTCCT
2868143 TTCTTCTTCCT
1 TTCTTCTTCCT
2868154 TTCCTT-TT-CT
1 TT-CTTCTTCCT
2868164 TTCTTCT
1 TTCTTCT
2868171 AAATTGTACC
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
9 11 0.21
10 5 0.10
11 33 0.63
12 3 0.06
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTTCTTCCT
Found at i:2868136 original size:31 final size:32
Alignment explanation
Indices: 2868101--2868170 Score: 124
Period size: 31 Copynumber: 2.2 Consensus size: 32
2868091 ACCCGATCTC
2868101 TTCTTCTCCCTTTCTTCTTCCTTTCC-TTTCT
1 TTCTTCTCCCTTTCTTCTTCCTTTCCTTTTCT
*
2868132 TTCTTCTTCCTTTCTTCTTCCTTTCCTTTTCT
1 TTCTTCTCCCTTTCTTCTTCCTTTCCTTTTCT
2868164 TTCTTCT
1 TTCTTCT
2868171 AAATTGTACC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 25 0.68
32 12 0.32
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (32 bp):
TTCTTCTCCCTTTCTTCTTCCTTTCCTTTTCT
Found at i:2868685 original size:28 final size:28
Alignment explanation
Indices: 2868653--2868720 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
2868643 ATTCGGTGAC
2868653 TGCATTATTCCATAAAAAAATTCCCCGT
1 TGCATTATTCCATAAAAAAATTCCCCGT
* *
2868681 TGCATTATTCCATAAAAAAATTTCCCTT
1 TGCATTATTCCATAAAAAAATTCCCCGT
2868709 TGCATTATTCCA
1 TGCATTATTCCA
2868721 CTGATTTTGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.37
Consensus pattern (28 bp):
TGCATTATTCCATAAAAAAATTCCCCGT
Found at i:2871626 original size:31 final size:32
Alignment explanation
Indices: 2871588--2871648 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
2871578 CATCTTGGTA
*
2871588 TTTATGTTAAAAAAACT-TTTTTTTTCAAATG
1 TTTATGTTAAAAAAACTATTTTATTTCAAATG
* *
2871619 TTTATGTTAAAATATCTATTTTATTTCAAA
1 TTTATGTTAAAAAAACTATTTTATTTCAAA
2871649 ACCGTTGTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.58
32 11 0.42
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.52
Consensus pattern (32 bp):
TTTATGTTAAAAAAACTATTTTATTTCAAATG
Found at i:2874828 original size:31 final size:31
Alignment explanation
Indices: 2874790--2874867 Score: 156
Period size: 31 Copynumber: 2.5 Consensus size: 31
2874780 TTAAAAAGCA
2874790 TAAGTTTTGGTCATTTACGTTATCGTTTTAT
1 TAAGTTTTGGTCATTTACGTTATCGTTTTAT
2874821 TAAGTTTTGGTCATTTACGTTATCGTTTTAT
1 TAAGTTTTGGTCATTTACGTTATCGTTTTAT
2874852 TAAGTTTTGGTCATTT
1 TAAGTTTTGGTCATTT
2874868 GGACGTTGAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.19, C:0.09, G:0.17, T:0.55
Consensus pattern (31 bp):
TAAGTTTTGGTCATTTACGTTATCGTTTTAT
Found at i:2876236 original size:31 final size:32
Alignment explanation
Indices: 2876201--2876278 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 32
2876191 TTCAACGTCC
* * *
2876201 AAGTGACCAAAA-TTTAATAAAACAATAACGT
1 AAGTGACAAAAAGCTTAATAAAACAATAACAT
*
2876232 AAGTGA-TAAAAGCTTAATAAAACAATAACAT
1 AAGTGACAAAAAGCTTAATAAAACAATAACAT
*
2876263 TAGTGACAAAAA-CTTA
1 AAGTGACAAAAAGCTTA
2876279 TGTTTTTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
30 4 0.10
31 32 0.80
32 4 0.10
ACGTcount: A:0.55, C:0.12, G:0.10, T:0.23
Consensus pattern (32 bp):
AAGTGACAAAAAGCTTAATAAAACAATAACAT
Found at i:2879367 original size:30 final size:30
Alignment explanation
Indices: 2879331--2879392 Score: 74
Period size: 30 Copynumber: 2.0 Consensus size: 30
2879321 CCTGTGATTG
*
2879331 GGACTAACTTT-TAA-TATTATAAAAGTATAA
1 GGACTAAATTTATAATTATTA-AAAAGT-TAA
2879361 GGACTAAATTTGATAATTATTAAAAAGTTAA
1 GGACTAAATTT-ATAATTATTAAAAAGTTAA
2879392 G
1 G
2879393 AATTTAACTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
30 10 0.36
31 4 0.14
32 9 0.32
33 5 0.18
ACGTcount: A:0.47, C:0.05, G:0.13, T:0.35
Consensus pattern (30 bp):
GGACTAAATTTATAATTATTAAAAAGTTAA
Found at i:2883213 original size:23 final size:23
Alignment explanation
Indices: 2883187--2883255 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
2883177 GTGTTCGTTT
*
2883187 ATTTATTATTCACGAACATGTTA
1 ATTTATTGTTCACGAACATGTTA
* * * *
2883210 ATTTAATGTTCACGAACGTGCTC
1 ATTTATTGTTCACGAACATGTTA
*
2883233 ATTTATATGTTCATGAACATGTT
1 ATTTAT-TGTTCACGAACATGTT
2883256 TGTTTAGTGT
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 23 0.64
24 13 0.36
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.42
Consensus pattern (23 bp):
ATTTATTGTTCACGAACATGTTA
Found at i:2883271 original size:11 final size:11
Alignment explanation
Indices: 2883252--2883356 Score: 68
Period size: 11 Copynumber: 9.4 Consensus size: 11
2883242 TTCATGAACA
*
2883252 TGTTTGTTTAG
1 TGTTCGTTTAG
*
2883263 TGTTCGTTTAA
1 TGTTCGTTTAG
*
2883274 TGTTTGTTTAG
1 TGTTCGTTTAG
*
2883285 TGTTCGTTTATA
1 TGTTCGTTTA-G
* ** *
2883297 TGTTCATGAACA
1 TGTTCGTTTA-G
2883309 TGTTCGTTTAG
1 TGTTCGTTTAG
* *
2883320 CGTTCATTTAG
1 TGTTCGTTTAG
*
2883331 TATTCGTTTAG
1 TGTTCGTTTAG
*
2883342 CGTT-GTTTTAG
1 TGTTCG-TTTAG
2883353 TGTT
1 TGTT
2883357 TTTTATCGTT
Statistics
Matches: 70, Mismatches: 22, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
10 1 0.01
11 54 0.77
12 15 0.21
ACGTcount: A:0.15, C:0.09, G:0.22, T:0.54
Consensus pattern (11 bp):
TGTTCGTTTAG
Found at i:2883277 original size:22 final size:23
Alignment explanation
Indices: 2883251--2883300 Score: 93
Period size: 22 Copynumber: 2.2 Consensus size: 23
2883241 GTTCATGAAC
2883251 ATGTTTGTTTAGTGTTCGTTTA-
1 ATGTTTGTTTAGTGTTCGTTTAT
2883273 ATGTTTGTTTAGTGTTCGTTTAT
1 ATGTTTGTTTAGTGTTCGTTTAT
2883296 ATGTT
1 ATGTT
2883301 CATGAACATG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.14, C:0.04, G:0.22, T:0.60
Consensus pattern (23 bp):
ATGTTTGTTTAGTGTTCGTTTAT
Found at i:2883340 original size:57 final size:56
Alignment explanation
Indices: 2883234--2883349 Score: 160
Period size: 57 Copynumber: 2.1 Consensus size: 56
2883224 AACGTGCTCA
* * * * * *
2883234 TTTATATGTTCATGAACATGTTTGTTTAGTGTTCGTTTAATGTTTGTTTAGTGTTCG
1 TTTATATGTTCATGAACATGTTCGTTTAGCGTTCATTTAATATTCGTTTAGCGTT-G
*
2883291 TTTATATGTTCATGAACATGTTCGTTTAGCGTTCATTTAGTATTCGTTTAGCGTTG
1 TTTATATGTTCATGAACATGTTCGTTTAGCGTTCATTTAATATTCGTTTAGCGTTG
2883347 TTT
1 TTT
2883350 TAGTGTTTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
56 4 0.08
57 48 0.92
ACGTcount: A:0.18, C:0.09, G:0.20, T:0.53
Consensus pattern (56 bp):
TTTATATGTTCATGAACATGTTCGTTTAGCGTTCATTTAATATTCGTTTAGCGTTG
Found at i:2884422 original size:25 final size:26
Alignment explanation
Indices: 2884394--2884449 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
2884384 AAAGTACCAC
* *
2884394 GTCAGTAATG-ATATAAATAATAATT
1 GTCACTAATGAATATAAACAATAATT
*
2884419 GTCACTAATGAATATAAACGATAATT
1 GTCACTAATGAATATAAACAATAATT
2884445 GTCAC
1 GTCAC
2884450 ACATAATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (26 bp):
GTCACTAATGAATATAAACAATAATT
Found at i:2885582 original size:30 final size:29
Alignment explanation
Indices: 2885538--2885594 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
2885528 TGGTTTTCTG
*
2885538 GAAAATAATTTACGTAAAATGGATTACCT
1 GAAAATAATTTACGTAAAATGAATTACCT
*
2885567 GAAAACTATTTTACGTAAAATGAATTAC
1 GAAAA-TAATTTACGTAAAATGAATTAC
2885595 ATTTTTCGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.32
Consensus pattern (29 bp):
GAAAATAATTTACGTAAAATGAATTACCT
Found at i:2885893 original size:19 final size:19
Alignment explanation
Indices: 2885871--2885913 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
2885861 TTTATTAACA
*
2885871 TAATACTAAAT-TATTATAT
1 TAATACTAAATATA-TAAAT
*
2885890 TAATATTAAATATATAAAT
1 TAATACTAAATATATAAAT
2885909 TAATA
1 TAATA
2885914 TTACTCATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
TAATACTAAATATATAAAT
Found at i:2885907 original size:27 final size:29
Alignment explanation
Indices: 2885842--2885916 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 29
2885832 TGAACACTCG
* *
2885842 TAATATTAATTATTATTATTTTATTAACA
1 TAATATAAATTATTATTATTATATTAACA
2885871 TAATACTAAATTATTA-TATTAATATTAA-A
1 TAATA-TAAATTATTATTATT-ATATTAACA
*
2885900 T-ATATAAATTAATATTA
1 TAATATAAATTATTATTA
2885917 CTCATTATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 9 0.22
28 5 0.12
29 11 0.28
30 15 0.38
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (29 bp):
TAATATAAATTATTATTATTATATTAACA
Found at i:2886520 original size:27 final size:27
Alignment explanation
Indices: 2886462--2886521 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
2886452 TATACAAAAT
2886462 AATATTATTTTATATATTTAATATTAA
1 AATATTATTTTATATATTTAATATTAA
* *
2886489 TATATTATTTTGATGATATTT-TTA-TAA
1 AATATTATTTT-AT-ATATTTAATATTAA
2886516 AATATT
1 AATATT
2886522 CATTATTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
27 18 0.64
28 4 0.14
29 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (27 bp):
AATATTATTTTATATATTTAATATTAA
Found at i:2888850 original size:21 final size:21
Alignment explanation
Indices: 2888824--2888866 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
2888814 CTGATAAGGA
2888824 TCCAGAACCTACCTCTATTCC
1 TCCAGAACCTACCTCTATTCC
2888845 TCCAGAACCTACCTCTATTCC
1 TCCAGAACCTACCTCTATTCC
2888866 T
1 T
2888867 AAAAGAGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.42, G:0.05, T:0.30
Consensus pattern (21 bp):
TCCAGAACCTACCTCTATTCC
Found at i:2892781 original size:110 final size:110
Alignment explanation
Indices: 2892667--2893205 Score: 832
Period size: 110 Copynumber: 4.9 Consensus size: 110
2892657 CAAACGAGTT
* * * * *
2892667 TGCTCCCTCTTTCTTCAGGGAGTAT-AGAACTCGAACAATCATCAATAATCGTGTATGCTCCCTA
1 TGCTCCCTATTTCTTCAGAGAGTATAAG-ACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTA
*
2892731 TTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACACTCGTGTC
65 TTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
* *
2892777 TGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCCACAATCGTGTTTGCTCCCTAT
1 TGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTAT
*
2892842 TTCTTCAAAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
66 TTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
* * *
2892887 TGCTCTCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCATGTCTGCTCTCTAT
1 TGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTAT
2892952 TTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
66 TTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
* *
2892997 TACTCCCTATTTCTTCAGAGAGTATAAGACTTGAACAATCTTCAACAATCGTGTCTGCTCCCTAT
1 TGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTAT
*
2893062 TTCTTCAAAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
66 TTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
* * * * *
2893107 TGCTCCCTATTTATTCAGAGAGTATAAGACTCGAACAATCTTCAGCAAACGGGTTTGCTCCCTAT
1 TGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTAT
*
2893172 TTCTTTCAG-GAAGTAT-AGAACTCGAATAATCTTC
66 TTC-TTCAGAG-AGTATAAG-ACTCGAACAATCTTC
2893206 TGCAAACGGG
Statistics
Matches: 396, Mismatches: 29, Indels: 7
0.92 0.07 0.02
Matches are distributed among these distances:
110 371 0.94
111 25 0.06
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.32
Consensus pattern (110 bp):
TGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTAT
TTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
Found at i:2892866 original size:165 final size:165
Alignment explanation
Indices: 2892615--2893205 Score: 841
Period size: 165 Copynumber: 3.6 Consensus size: 165
2892605 ACGGGTTCGT
* * * * * ** * *
2892615 TCCCTCTTCCTTCAGGGAGTAT-AGAACTTGAACAATCATCTGCAAACGAGTTTGCTCCCTCTTT
1 TCCCTATTTCTTCAGAGAGTATAAG-ACTCGAACAATCTTCCACAAACGTGTTTGCTCCCTATTT
* * * *
2892679 CTTCAGGGAGTAT-AGAACTCGAACAATCATCAATAATCGTGTATGCTCCCTATTTCTTCAGAGA
65 CTTCAGAGAGTATAAG-ACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGA
*
2892743 GTATAAGACTCGAACAATCTTCAACACTCGTGTCTGC
129 GTATAAGACTCGAACAATCTTCAACAATCGTGTCTGC
*
2892780 TCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCCACAATCGTGTTTGCTCCCTATTTC
1 TCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCCACAAACGTGTTTGCTCCCTATTTC
* *
2892845 TTCAAAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCTCTATTTCTTCAGAGAGT
66 TTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGT
*
2892910 ATAAGACTCGAACAATCTTCAACAATCATGTCTGC
131 ATAAGACTCGAACAATCTTCAACAATCGTGTCTGC
* * * * *
2892945 TCTCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTACTCCCTATTTC
1 TCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCCACAAACGTGTTTGCTCCCTATTTC
* *
2893010 TTCAGAGAGTATAAGACTTGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAAAGAGT
66 TTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGT
2893075 ATAAGACTCGAACAATCTTCAACAATCGTGTCTGC
131 ATAAGACTCGAACAATCTTCAACAATCGTGTCTGC
* *
2893110 TCCCTATTTATTCAGAGAGTATAAGACTCGAACAATCTT-CAGCAAACGGGTTTGCTCCCTATTT
1 TCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCCA-CAAACGTGTTTGCTCCCTATTT
*
2893174 CTTTCAG-GAAGTAT-AGAACTCGAATAATCTTC
65 C-TTCAGAG-AGTATAAG-ACTCGAACAATCTTC
2893206 TGCAAACGGG
Statistics
Matches: 384, Mismatches: 36, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
164 1 0.00
165 356 0.93
166 27 0.07
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (165 bp):
TCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCCACAAACGTGTTTGCTCCCTATTTC
TTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGT
ATAAGACTCGAACAATCTTCAACAATCGTGTCTGC
Found at i:2893430 original size:56 final size:56
Alignment explanation
Indices: 2892593--2893430 Score: 520
Period size: 55 Copynumber: 15.1 Consensus size: 56
2892583 AGACTTGAAA
* * * * * * *
2892593 AATCTTCTGCCAACGGGTTCGTTCCCT-CTTCCTTCAGGGAGTATAGAACTTGAAC
1 AATCTTCTGCAAACGGGTTCGCTCCCTATTTCTTTCAGGAAGTATAGAACTCGAAT
* * * * * *
2892648 AATCATCTGCAAACGAGTTTGCTCCCTCTTTC-TTCAGGGAGTATAGAACTCGAAC
1 AATCTTCTGCAAACGGGTTCGCTCCCTATTTCTTTCAGGAAGTATAGAACTCGAAT
* *** * * *
2892703 AATCATCAATAATCGTGTAT-GCTCCCTATTTC-TTCA-GAGAGTATA-AGACTCGAAC
1 AATCTTCTGCAAACGGGT-TCGCTCCCTATTTCTTTCAGGA-AGTATAGA-ACTCGAAT
** ** * *
2892758 AATCTTCAACACTCGTG-TCTGCTCCCTATTTC-TTCA-GAGAGTATA-AGACTCGAAC
1 AATCTTCTGCAAACGGGTTC-GCTCCCTATTTCTTTCAGGA-AGTATAGA-ACTCGAAT
** * * * * *
2892813 AATCTTCCACAATCGTGTTTGCTCCCTATTTC-TTCA-AAGAGTATA-AGACTCGAAC
1 AATCTTCTGCAAACGGGTTCGCTCCCTATTTCTTTCAGGA-AGTATAGA-ACTCGAAT
** * * * *
2892868 AATCTTCAACAATCGTG-TCTGCTCTCTATTTC-TTCA-GAGAGTATA-AGACTCGAAC
1 AATCTTCTGCAAACGGGTTC-GCTCCCTATTTCTTTCAGGA-AGTATAGA-ACTCGAAT
** * ** * *
2892923 AATCTTCAACAATCATG-TCTGCTCTCTATTTC-TTCA-GAGAGTATA-AGACTCGAAC
1 AATCTTCTGCAAACGGGTTC-GCTCCCTATTTCTTTCAGGA-AGTATAGA-ACTCGAAT
** * * * * *
2892978 AATCTTCAACAATCGTG-TCTACTCCCTATTTC-TTCA-GAGAGTATA-AGACTTGAAC
1 AATCTTCTGCAAACGGGTTC-GCTCCCTATTTCTTTCAGGA-AGTATAGA-ACTCGAAT
** * * * *
2893033 AATCTTCAACAATCGTG-TCTGCTCCCTATTTC-TTCA-AAGAGTATA-AGACTCGAAC
1 AATCTTCTGCAAACGGGTTC-GCTCCCTATTTCTTTCAGGA-AGTATAGA-ACTCGAAT
** * * * *
2893088 AATCTTCAACAATCGTG-TCTGCTCCCTATTT-ATTCA-GAGAGTATA-AGACTCGAAC
1 AATCTTCTGCAAACGGGTTC-GCTCCCTATTTCTTTCAGGA-AGTATAGA-ACTCGAAT
* *
2893143 AATCTTCAGCAAACGGGTTTGCTCCCTATTTCTTTCAGGAAGTATAGAACTCGAAT
1 AATCTTCTGCAAACGGGTTCGCTCCCTATTTCTTTCAGGAAGTATAGAACTCGAAT
* *
2893199 AATCTTCTGCAAACGGGTTCGCTCCCTCTTTTTTTCAGGAAGTATAGAACTCGAAT
1 AATCTTCTGCAAACGGGTTCGCTCCCTATTTCTTTCAGGAAGTATAGAACTCGAAT
* *
2893255 AATCCTCTGCAAACGGGTTCGCTCCCTTTTTCTTTCAGGAAGTATAGAACTCGAAT
1 AATCTTCTGCAAACGGGTTCGCTCCCTATTTCTTTCAGGAAGTATAGAACTCGAAT
* * * * *
2893311 AATCTTTTGCAAATGGGTTTGCTCCCTCTTTCTTTCAAGAAGTATAGAACTCGAAT
1 AATCTTCTGCAAACGGGTTCGCTCCCTATTTCTTTCAGGAAGTATAGAACTCGAAT
* *
2893367 AATCTTCTGTAAACAGGTTCGCTCCCTA-TTCTTTTCAGGAAGTATAGAACTCGAAT
1 AATCTTCTGCAAACGGGTTCGCTCCCTATTTC-TTTCAGGAAGTATAGAACTCGAAT
2893423 AATCTTCT
1 AATCTTCT
2893431 TTTGCTTCAC
Statistics
Matches: 709, Mismatches: 60, Indels: 27
0.89 0.08 0.03
Matches are distributed among these distances:
53 1 0.00
54 3 0.00
55 471 0.66
56 231 0.33
57 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.32
Consensus pattern (56 bp):
AATCTTCTGCAAACGGGTTCGCTCCCTATTTCTTTCAGGAAGTATAGAACTCGAAT
Found at i:2894798 original size:12 final size:11
Alignment explanation
Indices: 2894783--2894841 Score: 60
Period size: 10 Copynumber: 5.9 Consensus size: 11
2894773 TTTTTTCCTT
2894783 TTCATTTTTTCA
1 TTCATTTTTT-A
2894795 TTCATTTTTTA
1 TTCATTTTTTA
2894806 TT-ATTTTTT-
1 TTCATTTTTTA
2894815 TTC---TTTT-
1 TTCATTTTTTA
2894822 TTCA-TTTTTA
1 TTCATTTTTTA
2894832 TTCATTTTTT
1 TTCATTTTTT
2894842 CTTCTTCTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
7 7 0.17
9 6 0.14
10 11 0.26
11 8 0.19
12 10 0.24
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (11 bp):
TTCATTTTTTA
Found at i:2894825 original size:27 final size:29
Alignment explanation
Indices: 2894795--2894854 Score: 90
Period size: 27 Copynumber: 2.1 Consensus size: 29
2894785 CATTTTTTCA
2894795 TTCATTTTTTATT-ATTTTTT-TTCTT-TT
1 TTCA-TTTTTATTCATTTTTTCTTCTTCTT
2894822 TTCATTTTTATTCATTTTTTCTTCTTCTT
1 TTCATTTTTATTCATTTTTTCTTCTTCTT
2894851 TTCA
1 TTCA
2894855 ATCAAAATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 8 0.27
27 11 0.37
28 5 0.17
29 6 0.20
ACGTcount: A:0.12, C:0.13, G:0.00, T:0.75
Consensus pattern (29 bp):
TTCATTTTTATTCATTTTTTCTTCTTCTT
Found at i:2894850 original size:31 final size:30
Alignment explanation
Indices: 2894773--2894852 Score: 83
Period size: 31 Copynumber: 2.5 Consensus size: 30
2894763 TTGTTTCTTT
*
2894773 TTTTTTCCTTTTCATTTTTTCATTCATTTTTTA
1 TTTTTT-CTTTTC-TTTTTTCATT-ATTTTTCA
2894806 TTATTTT-TTTTCTTTTTTCATT-TTTATTCA
1 TT-TTTTCTTTTCTTTTTTCATTATTT-TTCA
2894836 TTTTTTCTTCTTCTTTT
1 TTTTTTCTT-TTCTTTT
2894853 CAATCAAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
29 7 0.17
30 7 0.17
31 17 0.40
32 5 0.12
33 2 0.05
34 4 0.10
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (30 bp):
TTTTTTCTTTTCTTTTTTCATTATTTTTCA
Found at i:2904801 original size:16 final size:16
Alignment explanation
Indices: 2904776--2904807 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2904766 AACCTTATTC
2904776 ACATGATATCTACCCA
1 ACATGATATCTACCCA
*
2904792 ACATGGTATCTACCCA
1 ACATGATATCTACCCA
2904808 GTCTTGCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.31, G:0.09, T:0.25
Consensus pattern (16 bp):
ACATGATATCTACCCA
Found at i:2907986 original size:17 final size:17
Alignment explanation
Indices: 2907964--2908005 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
2907954 TGCATTTTCA
*
2907964 GGTCACGGGAACGAGTT
1 GGTCACGGGAACGAGCT
**
2907981 GGTCACGGGGGCGAGCT
1 GGTCACGGGAACGAGCT
2907998 GGTCACGG
1 GGTCACGG
2908006 AGGTAGCCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.17, C:0.21, G:0.48, T:0.14
Consensus pattern (17 bp):
GGTCACGGGAACGAGCT
Found at i:2908348 original size:15 final size:15
Alignment explanation
Indices: 2908325--2908355 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2908315 ATTTATTTAT
*
2908325 TTATGTATATATATA
1 TTATATATATATATA
2908340 TTATATATATATATA
1 TTATATATATATATA
2908355 T
1 T
2908356 ATGATCACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
TTATATATATATATA
Found at i:2932670 original size:21 final size:21
Alignment explanation
Indices: 2932634--2932715 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 21
2932624 TTTGGTGCAG
*
2932634 AGGGAATCGA-TCCCCCCATA
1 AGGGAACCGATTCCCCCCATA
**
2932654 AGGGAACCGATTCCCCCTTTGA
1 AGGGAACCGATTCCCCCCAT-A
*
2932676 AGGGGAACCGATTCCCCCCACA
1 A-GGGAACCGATTCCCCCCATA
* * *
2932698 GGGGAATCGATACCCCCC
1 AGGGAACCGATTCCCCCC
2932716 TGGGGTTCTG
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
20 9 0.18
21 22 0.44
22 3 0.06
23 16 0.32
ACGTcount: A:0.26, C:0.37, G:0.23, T:0.15
Consensus pattern (21 bp):
AGGGAACCGATTCCCCCCATA
Found at i:2934961 original size:11 final size:11
Alignment explanation
Indices: 2934945--2934991 Score: 67
Period size: 11 Copynumber: 4.0 Consensus size: 11
2934935 AAAGGGGGAG
2934945 AAGTGTGTTTT
1 AAGTGTGTTTT
2934956 AAGTGTGTTTTT
1 AAGTGTG-TTTT
2934968 AAAAGTGTGTTTT
1 --AAGTGTGTTTT
2934981 AAGTGTGTTTT
1 AAGTGTGTTTT
2934992 TAAAATGATA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
11 18 0.55
12 4 0.12
13 4 0.12
14 7 0.21
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (11 bp):
AAGTGTGTTTT
Found at i:2934974 original size:25 final size:25
Alignment explanation
Indices: 2934945--2934996 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
2934935 AAAGGGGGAG
2934945 AAGTGTGTTTTAAGTGTGTTTTTAA
1 AAGTGTGTTTTAAGTGTGTTTTTAA
2934970 AAGTGTGTTTTAAGTGTGTTTTTAA
1 AAGTGTGTTTTAAGTGTGTTTTTAA
2934995 AA
1 AA
2934997 TGATAAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (25 bp):
AAGTGTGTTTTAAGTGTGTTTTTAA
Found at i:2939778 original size:17 final size:18
Alignment explanation
Indices: 2939758--2939798 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
2939748 TAAGTATTTT
* *
2939758 TTTAATTTGGGTTAA-AA
1 TTTAATTAGGATTAATAA
2939775 TTTAATTAGGATTAATAA
1 TTTAATTAGGATTAATAA
2939793 TTTAAT
1 TTTAAT
2939799 GAAAATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (18 bp):
TTTAATTAGGATTAATAA
Found at i:2939860 original size:12 final size:12
Alignment explanation
Indices: 2939843--2939868 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2939833 AATATGTATT
2939843 TAATATATATAA
1 TAATATATATAA
2939855 TAATATATATAA
1 TAATATATATAA
2939867 TA
1 TA
2939869 TTTAATAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TAATATATATAA
Found at i:2956292 original size:54 final size:54
Alignment explanation
Indices: 2956229--2956818 Score: 243
Period size: 54 Copynumber: 10.9 Consensus size: 54
2956219 TATAAGTCTT
* * *
2956229 TGGG-TGCACACGTAGTGCCGATACGGTCACTCATAAGCTCATTATGAATTCCA
1 TGGGTTGCACACTTAGTGCCGATACGGTCATTCATAAACTCATTATGAATTCCA
* * * * **
2956282 TGGGTTGCACACTTAGTGTCGATACTGTCGTTCATAAACTTATTATGAATTCTG
1 TGGGTTGCACACTTAGTGCCGATACGGTCATTCATAAACTCATTATGAATTCCA
* * * * * **
2956336 TGGGTTGCACATTTAGTGCCGATATGATAATTCACAAACTCATTATGAATAACA
1 TGGGTTGCACACTTAGTGCCGATACGGTCATTCATAAACTCATTATGAATTCCA
* * * * ** * * * *
2956390 TGGGGTGCACACATAGTGCCCATACAGAAATTCATAAACTAAATATGAATTTCT
1 TGGGTTGCACACTTAGTGCCGATACGGTCATTCATAAACTCATTATGAATTCCA
* ** * * ** * * *
2956444 TAGGTTGCACACACAGTGCCAATACAGAAATTCATAAACTTATTATGAATTTCT
1 TGGGTTGCACACTTAGTGCCGATACGGTCATTCATAAACTCATTATGAATTCCA
** * ** * ** * *
2956498 TAAGTTGCAAACACAGTGCCAATACGGAAATTCATAAACTTATTATGAATTTC-
1 TGGGTTGCACACTTAGTGCCGATACGGTCATTCATAAACTCATTATGAATTCCA
** ** * *** * * *
2956551 TAAAGTTGCACACACAGTGCCAATACGAAAATTCATAAACTGATTATGAATTTCT
1 T-GGGTTGCACACTTAGTGCCGATACGGTCATTCATAAACTCATTATGAATTCCA
** * * * *** * *
2956606 TAAGTTGTACACATAGTGCCAATACGAAAATTCATAAACTTATTATGAATT-TA
1 TGGGTTGCACACTTAGTGCCGATACGGTCATTCATAAACTCATTATGAATTCCA
** ** * * * * * *
2956659 TTAAGTTGCACACACAGTGCCAATACGG-AAGTTCTTAAACTTATTATGAATTTCT
1 -TGGGTTGCACACTTAGTGCCGATACGGTCA-TTCATAAACTCATTATGAATTCCA
** ** * * *** * * *
2956714 TAAGTTGCACACACAGTGTCAATACGAAAATTCATAAACTTATTATGAATTTCT
1 TGGGTTGCACACTTAGTGCCGATACGGTCATTCATAAACTCATTATGAATTCCA
** ** * * ** *
2956768 TAAGTTGCACACACAGTGCCAATACAGAAATTCATAAACTTATTATGAATT
1 TGGGTTGCACACTTAGTGCCGATACGGTCATTCATAAACTCATTATGAATT
2956819 TTTTAAGTTG
Statistics
Matches: 465, Mismatches: 65, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
53 7 0.02
54 455 0.98
55 3 0.01
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32
Consensus pattern (54 bp):
TGGGTTGCACACTTAGTGCCGATACGGTCATTCATAAACTCATTATGAATTCCA
Found at i:2956819 original size:54 final size:53
Alignment explanation
Indices: 2956312--2956836 Score: 683
Period size: 54 Copynumber: 9.7 Consensus size: 53
2956302 GATACTGTCG
** *** * *
2956312 TTCATAAACTTATTATGAA-TTCTGTGGGTTGCACATTTAGTGCCGATATGATAA
1 TTCATAAACTTATTATGAATTTCT-TAAGTTGCACACACAGTGCCAATACGA-AA
* * ** * ** * * *
2956366 TTCACAAACTCATTATGAATAACATGGGGTGCACACATAGTGCCCATACAGAAA
1 TTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATAC-GAAA
* * *
2956420 TTCATAAACTAAATATGAATTTCTTAGGTTGCACACACAGTGCCAATACAGAAA
1 TTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATAC-GAAA
*
2956474 TTCATAAACTTATTATGAATTTCTTAAGTTGCAAACACAGTGCCAATACGGAAA
1 TTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATAC-GAAA
*
2956528 TTCATAAACTTATTATGAATTTCTAAAGTTGCACACACAGTGCCAATACGAAAA
1 TTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACG-AAA
* * *
2956582 TTCATAAACTGATTATGAATTTCTTAAGTTGTACACATAGTGCCAATACGAAAA
1 TTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACG-AAA
* *
2956636 TTCATAAACTTATTATGAATTTATTAAGTTGCACACACAGTGCCAATACGGAAG
1 TTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATAC-GAAA
* *
2956690 TTCTTAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGTCAATACGAAAA
1 TTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACG-AAA
2956744 TTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACAGAAA
1 TTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATAC-GAAA
*
2956798 TTCATAAACTTATTATGAATTTTTTAAGTTGCACACACA
1 TTCATAAACTTATTATGAATTTCTTAAGTTGCACACACA
2956837 ATGGCATTCG
Statistics
Matches: 422, Mismatches: 43, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
53 2 0.00
54 415 0.98
55 5 0.01
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (53 bp):
TTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACGAAA
Found at i:2959541 original size:172 final size:175
Alignment explanation
Indices: 2959245--2959593 Score: 677
Period size: 172 Copynumber: 2.0 Consensus size: 175
2959235 AACCTGCTCA
2959245 ATACCTTGATAACCATCAACCTTGAATTCTACCTCTCGATCTGGAGGTAACCCAGGTAATTCATC
1 ATACCTTGATAACCATCAACCTTGAATTCTACCTCTCGATCTGGAGGTAACCCAGGTAATTCATC
2959310 TGAAAAGACATCTATAAATTCTCGAGTTGTGGAAATATCATACAATTCTACTTTAATTATTTTGA
66 TGAAAAGACATCTATAAATTCTCGAGTTGTGGAAATATCATACAATTCTACTTTAATTATTTTGA
2959375 TTATCTATCACATTAGCCAGAAAAACTATACATCTTTTTGACATC
131 TTATCTATCACATTAGCCAGAAAAACTATACATCTTTTTGACATC
2959420 ATACCTT-ATAACCATCAACCTTGAATTCTACCTCTCGATCTGGAGGTAACCCAGGTAA-TCATC
1 ATACCTTGATAACCATCAACCTTGAATTCTACCTCTCGATCTGGAGGTAACCCAGGTAATTCATC
2959483 TG-AAAGACATCTATAAATTCTCGAGTTGTGGAAATATCATACAATTCTACTTTAATTATTTTGA
66 TGAAAAGACATCTATAAATTCTCGAGTTGTGGAAATATCATACAATTCTACTTTAATTATTTTGA
2959547 TTATCTATCACATTAGCCAGAAAAACTATACATCTTTTTGACATC
131 TTATCTATCACATTAGCCAGAAAAACTATACATCTTTTTGACATC
2959592 AT
1 AT
2959594 TTTCTTCACA
Statistics
Matches: 174, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
172 109 0.63
173 7 0.04
174 51 0.29
175 7 0.04
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (175 bp):
ATACCTTGATAACCATCAACCTTGAATTCTACCTCTCGATCTGGAGGTAACCCAGGTAATTCATC
TGAAAAGACATCTATAAATTCTCGAGTTGTGGAAATATCATACAATTCTACTTTAATTATTTTGA
TTATCTATCACATTAGCCAGAAAAACTATACATCTTTTTGACATC
Found at i:2961642 original size:54 final size:54
Alignment explanation
Indices: 2961584--2961836 Score: 197
Period size: 54 Copynumber: 4.7 Consensus size: 54
2961574 GGTGCTCACG
* * ** *
2961584 TAGTGCCGATACGGTCATTCATAAGCTCATTATGAATTCCATGGGTTTCACACT
1 TAGTGCCGATACGGTAATTCATAAACTCATTATGAATTATATGGGTTACACACT
* * ** * * *
2961638 TAGTGCTGATACAGTCGTTCATAATCTGATTATGAATTATGTGGGTTACACACT
1 TAGTGCCGATACGGTAATTCATAAACTCATTATGAATTATATGGGTTACACACT
* * * *
2961692 TAGT-CTCGATACGGTAATTAACAAACTCATTATGAATTATATGGGGTACA-ACA
1 TAGTGC-CGATACGGTAATTCATAAACTCATTATGAATTATATGGGTTACACACT
* * * * * * * * *
2961745 TAGTGCCCATATGGAAATTCATAAACTAATTATGAATT-TCTTAGGATGCACACA
1 TAGTGCCGATACGGTAATTCATAAACTCATTATGAATTAT-ATGGGTTACACACT
* ** * *
2961799 TAGTGCCAATACGAAAATTCATAAACTTATTATTAATT
1 TAGTGCCGATACGGTAATTCATAAACTCATTATGAATT
2961837 TCTTAAGTTG
Statistics
Matches: 160, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
52 1 0.01
53 39 0.24
54 120 0.75
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (54 bp):
TAGTGCCGATACGGTAATTCATAAACTCATTATGAATTATATGGGTTACACACT
Found at i:2961779 original size:53 final size:54
Alignment explanation
Indices: 2961655--2962160 Score: 230
Period size: 54 Copynumber: 9.4 Consensus size: 54
2961645 GATACAGTCG
* * * * * * *
2961655 TTCATAATCTGATTATGAATTATGTGGGTTACACACTTAGT-CTCGATACGGTAA
1 TTCATAAACTAATTATGAATTATATGGGATACACACATAGTGC-CAATACGGAAA
* * * * * *
2961709 TTAACAAACTCATTATGAATTATATGGGGTACA-ACATAGTGCCCATATGGAAA
1 TTCATAAACTAATTATGAATTATATGGGATACACACATAGTGCCAATACGGAAA
* * * *
2961762 TTCATAAACTAATTATGAATT-TCTTAGGATGCACACATAGTGCCAATACGAAAA
1 TTCATAAACTAATTATGAATTAT-ATGGGATACACACATAGTGCCAATACGGAAA
* * * ** * * * * * *
2961816 TTCATAAACTTATTATTAATT-TCTTAAGTTGCACACACAGGGCAAATACAGAAA
1 TTCATAAACTAATTATGAATTAT-ATGGGATACACACATAGTGCCAATACGGAAA
* * * ** * * *
2961870 CTCATAAACTTATTATGAGATTCT-TAAG-TAGCACACACAGTGCCAATACAGATA
1 TTCATAAACTAATTATGA-ATTATATGGGATA-CACACATAGTGCCAATACGGAAA
* * * * *
2961924 TTGATAAACTTATTATGAATTTCTTAAGTTGA-ACACAC--AGTGCCAATACGGAAA
1 TTCATAAACTAATTATGAA-TT-ATATG-GGATACACACATAGTGCCAATACGGAAA
* * * * *
2961978 TTCATAAACTTATTATGAATTTCTTAAGCTG-TACACAC--AGTGCCAATACAGAAA
1 TTCATAAACTAATTATGAA-TT-ATATG-GGATACACACATAGTGCCAATACGGAAA
* * ** * * *
2962032 TTCATAAACTTATTATGAATT-TCTTAAGTTGCACACATAGTGCCAATACGAAAA
1 TTCATAAACTAATTATGAATTAT-ATGGGATACACACATAGTGCCAATACGGAAA
* * * ** * * * *
2962086 TTCGTAAACTTATTATGAATT-TCTTAAGTTGCACACACAGTTCCAATACGGAAA
1 TTCATAAACTAATTATGAATTAT-ATGGGATACACACATAGTGCCAATACGGAAA
*
2962140 TTCATAAACTTATTATGAATT
1 TTCATAAACTAATTATGAATT
2962161 TCTTAAGTTG
Statistics
Matches: 378, Mismatches: 58, Indels: 32
0.81 0.12 0.07
Matches are distributed among these distances:
51 2 0.01
52 7 0.02
53 42 0.11
54 315 0.83
55 4 0.01
56 6 0.02
57 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (54 bp):
TTCATAAACTAATTATGAATTATATGGGATACACACATAGTGCCAATACGGAAA
Found at i:2961837 original size:54 final size:54
Alignment explanation
Indices: 2961759--2962181 Score: 611
Period size: 54 Copynumber: 7.8 Consensus size: 54
2961749 GCCCATATGG
* * * *
2961759 AAATTCATAAACTAATTATGAATTTCTTAGGATGCACACATAGTGCCAATACGA
1 AAATTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACGA
* * *
2961813 AAATTCATAAACTTATTATTAATTTCTTAAGTTGCACACACAGGGCAAATAC-A
1 AAATTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACGA
* *
2961866 GAAACTCATAAACTTATTATGAGA-TTCTTAAGTAGCACACACAGTGCCAATAC-A
1 -AAATTCATAAACTTATTATGA-ATTTCTTAAGTTGCACACACAGTGCCAATACGA
* * * *
2961920 GATATTGATAAACTTATTATGAATTTCTTAAGTTGAACACACAGTGCCAATACGG
1 -AAATTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACGA
* *
2961975 AAATTCATAAACTTATTATGAATTTCTTAAGCTGTACACACAGTGCCAATAC-A
1 AAATTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACGA
*
2962028 GAAATTCATAAACTTATTATGAATTTCTTAAGTTGCACACATAGTGCCAATACGA
1 -AAATTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACGA
* * *
2962083 AAATTCGTAAACTTATTATGAATTTCTTAAGTTGCACACACAGTTCCAATACGG
1 AAATTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACGA
2962137 AAATTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTG
1 AAATTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTG
2962182 TCATTCGGCA
Statistics
Matches: 331, Mismatches: 32, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
53 2 0.01
54 327 0.99
55 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (54 bp):
AAATTCATAAACTTATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACGA
Found at i:2964284 original size:17 final size:17
Alignment explanation
Indices: 2964262--2964299 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
2964252 CTTGCATTCT
2964262 TATGTTTATGTGATTTA
1 TATGTTTATGTGATTTA
2964279 TATGTTTATGTGATTTA
1 TATGTTTATGTGATTTA
2964296 TATG
1 TATG
2964300 CTGCTCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (17 bp):
TATGTTTATGTGATTTA
Found at i:2968222 original size:29 final size:29
Alignment explanation
Indices: 2968180--2968414 Score: 425
Period size: 29 Copynumber: 8.1 Consensus size: 29
2968170 CAGGATCTTG
*
2968180 CTGTTCAATTTTTGTGTCATCCTTCATCA
1 CTGTTCAATTTTTGCGTCATCCTTCATCA
*
2968209 CTGTTCAATTTTTGTGTCATCCTTCATCA
1 CTGTTCAATTTTTGCGTCATCCTTCATCA
*
2968238 CTGTTCAATTTTTGCGTCATCCTTCATAA
1 CTGTTCAATTTTTGCGTCATCCTTCATCA
2968267 CTGTTCAATTTTTGCGTCATCCTTCATCA
1 CTGTTCAATTTTTGCGTCATCCTTCATCA
2968296 CTGTTCAATTTTTGCGTCATCCTTCATCA
1 CTGTTCAATTTTTGCGTCATCCTTCATCA
2968325 CTGTTCAATTTTTGCGTCATCCTTCATCA
1 CTGTTCAATTTTTGCGTCATCCTTCATCA
*
2968354 CTGTTCAATTTTTGCGTCATCTTTCATCA
1 CTGTTCAATTTTTGCGTCATCCTTCATCA
*
2968383 CTGTTCAATTTTTGCATCATCCTTCATCA
1 CTGTTCAATTTTTGCGTCATCCTTCATCA
2968412 CTG
1 CTG
2968415 ATCCTCATTA
Statistics
Matches: 200, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 200 1.00
ACGTcount: A:0.18, C:0.26, G:0.10, T:0.46
Consensus pattern (29 bp):
CTGTTCAATTTTTGCGTCATCCTTCATCA
Found at i:2969144 original size:50 final size:51
Alignment explanation
Indices: 2969090--2969198 Score: 132
Period size: 53 Copynumber: 2.1 Consensus size: 51
2969080 ATACTTTTTG
**
2969090 GCACAATGGAGTAATAAGTCA-GGG-AAAATAGATATCCTCAAGTTTCATGA
1 GCACAATAAAGTAATAAGT-AGGGGAAAAATAGATATCCTCAAGTTTCATGA
* * *
2969140 GCACAATAAAGTAATTAGTATGGGGAAAAAATAGATATCCTGAAGTTTCTTGA
1 GCACAATAAAGTAATAAGTA-GGGG-AAAAATAGATATCCTCAAGTTTCATGA
2969193 GCACAA
1 GCACAA
2969199 ATGAAGAGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
49 1 0.02
50 16 0.32
51 3 0.06
53 30 0.60
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.25
Consensus pattern (51 bp):
GCACAATAAAGTAATAAGTAGGGGAAAAATAGATATCCTCAAGTTTCATGA
Found at i:2975274 original size:15 final size:17
Alignment explanation
Indices: 2975242--2975274 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
2975232 TTTATAGGCT
2975242 AAAATATATAACTTTTA
1 AAAATATATAACTTTTA
2975259 AAAAT-TATAA-TTTTA
1 AAAATATATAACTTTTA
2975274 A
1 A
2975275 TCCCTAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 5 0.31
17 5 0.31
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
AAAATATATAACTTTTA
Found at i:2975326 original size:29 final size:30
Alignment explanation
Indices: 2975278--2975339 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
2975268 ATTTTAATCC
**
2975278 CTAAACTTTTCAAAGTTTATACTTTAGACA
1 CTAAACTTTTCAAAACTTATACTTTAGACA
* *
2975308 CTAAAC-TTTCAAAACTTATATTTTAGTCA
1 CTAAACTTTTCAAAACTTATACTTTAGACA
2975337 CTA
1 CTA
2975340 GACAAAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 22 0.79
30 6 0.21
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.40
Consensus pattern (30 bp):
CTAAACTTTTCAAAACTTATACTTTAGACA
Found at i:2977904 original size:44 final size:44
Alignment explanation
Indices: 2977854--2977939 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 44
2977844 AGCTCATAAT
* * *
2977854 TTGCACCGAAGTGCCATATATTTGTCCCAAATGACCAAATAAGG
1 TTGCACCGAAGTGCCACATATTTATCCCAAAGGACCAAATAAGG
* * *
2977898 TTGCACCGAATTGCCACATATTTATCCCGAAGGACCACATAA
1 TTGCACCGAAGTGCCACATATTTATCCCAAAGGACCAAATAA
2977940 TTCTCCCGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (44 bp):
TTGCACCGAAGTGCCACATATTTATCCCAAAGGACCAAATAAGG
Found at i:2977935 original size:21 final size:21
Alignment explanation
Indices: 2977911--2977970 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
2977901 CACCGAATTG
*
2977911 CCACATATTTATCCCGAAGGA
1 CCACATAATTATCCCGAAGGA
*
2977932 CCACATAATTCTCCCGAAGGA
1 CCACATAATTATCCCGAAGGA
*
2977953 CCACATAATTGTCCCGAA
1 CCACATAATTATCCCGAA
2977971 CCATAGGCTC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.33, C:0.32, G:0.13, T:0.22
Consensus pattern (21 bp):
CCACATAATTATCCCGAAGGA
Found at i:2978140 original size:21 final size:21
Alignment explanation
Indices: 2978101--2978147 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
2978091 CATAGAGTTT
*
2978101 GTTCACATTCACTGGTTCAAA
1 GTTCACATTCACTGATTCAAA
* * *
2978122 GTTCACATTCATTTATTCACA
1 GTTCACATTCACTGATTCAAA
2978143 GTTCA
1 GTTCA
2978148 TACTTCCATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (21 bp):
GTTCACATTCACTGATTCAAA
Found at i:2978718 original size:22 final size:22
Alignment explanation
Indices: 2978690--2978743 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
2978680 CTACACGAAT
2978690 GGTATCGATACCTCTATCAACA
1 GGTATCGATACCTCTATCAACA
2978712 GGTATCGATACCTCTATCAACA
1 GGTATCGATACCTCTATCAACA
*
2978734 GATATCGATA
1 GGTATCGATA
2978744 GAACCCTCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (22 bp):
GGTATCGATACCTCTATCAACA
Found at i:2989907 original size:19 final size:19
Alignment explanation
Indices: 2989883--2989922 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
2989873 ACTACTTTTG
*
2989883 TTATTATGATTTTATTACT
1 TTATTATCATTTTATTACT
* *
2989902 TTATTATCTTTTTGTTACT
1 TTATTATCATTTTATTACT
2989921 TT
1 TT
2989923 CATAAAATAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.20, C:0.07, G:0.05, T:0.68
Consensus pattern (19 bp):
TTATTATCATTTTATTACT
Found at i:3001941 original size:20 final size:20
Alignment explanation
Indices: 3001909--3001956 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
3001899 AATGATTTTC
*
3001909 TTTT-AAAAGCAAAATTG-GA
1 TTTTGAAAAGCAAAA-TGAAA
*
3001928 TTTTGAAAATCAAAATGAAA
1 TTTTGAAAAGCAAAATGAAA
3001948 TTTTGAAAA
1 TTTTGAAAA
3001957 AAGAGTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.24
20 19 0.76
ACGTcount: A:0.50, C:0.04, G:0.12, T:0.33
Consensus pattern (20 bp):
TTTTGAAAAGCAAAATGAAA
Found at i:3003508 original size:21 final size:22
Alignment explanation
Indices: 3003471--3003511 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
3003461 TAAAATATTA
*
3003471 TAAAGGAAGTATTGATACTCAT
1 TAAAGGAAGTATCGATACTCAT
3003493 TAAAGG-AGTATCGATACTC
1 TAAAGGAAGTATCGATACTC
3003512 CATGTCCTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (22 bp):
TAAAGGAAGTATCGATACTCAT
Found at i:3006765 original size:21 final size:20
Alignment explanation
Indices: 3006712--3006766 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
3006702 ATACTCAAAG
*
3006712 GAGTATCGATAATTATCCCC
1 GAGTATCGATACTTATCCCC
*
3006732 GAGGTATTGATACTTGA-CCCC
1 GA-GTATCGATACTT-ATCCCC
3006753 AGAGTATCGATACT
1 -GAGTATCGATACT
3006767 ACAAGTAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 2 0.07
21 24 0.83
22 3 0.10
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (20 bp):
GAGTATCGATACTTATCCCC
Found at i:3008182 original size:2 final size:2
Alignment explanation
Indices: 3008175--3008225 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
3008165 TGGAAGAATG
3008175 AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3008216 AT AT AT AT AT
1 AT AT AT AT AT
3008226 TCGGGTCAAG
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:3008659 original size:17 final size:17
Alignment explanation
Indices: 3008637--3008680 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
3008627 TTAAACTATA
3008637 AAAATATAAAAATAATT
1 AAAATATAAAAATAATT
**
3008654 AAAATATAATTATAATT
1 AAAATATAAAAATAATT
*
3008671 ATAATA-AAAA
1 AAAATATAAAA
3008681 GATATTTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAATATAAAAATAATT
Found at i:3015506 original size:23 final size:23
Alignment explanation
Indices: 3015471--3015543 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
3015461 ATACTTTACA
* *
3015471 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACATATTACATT
* *
3015494 ATATAAACGCTACGTATTACATT
1 ATATAAGCGCTACATATTACATT
* *
3015517 GTATAAGCGCTACATATTACATC
1 ATATAAGCGCTACATATTACATT
3015540 ATAT
1 ATAT
3015544 TTTTACCTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACATATTACATT
Found at i:3015991 original size:23 final size:23
Alignment explanation
Indices: 3015956--3016028 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
3015946 ATACTTTACA
*
3015956 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
3015979 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* *
3016002 GTATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
3016025 ATAT
1 ATAT
3016029 TTTTACTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:3015999 original size:485 final size:487
Alignment explanation
Indices: 3015069--3016414 Score: 2377
Period size: 485 Copynumber: 2.8 Consensus size: 487
3015059 TTATAATATG
* *
3015069 TTGAAAGTGTCTATACTTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATAC-TTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
* *
3015134 TTCAA--TTTTTTAATAGTGTTTCATGTTTTCTACCTACAATATTAATTTAATAATTTCATTTGC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
*
3015197 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTATAATTTAAATTTAACAATA
130 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
3015262 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATGATAATATA
195 TTAACCAAAGATAATAATAAATATGT-A-ATATATGTTTATTG-TTTTAATTTAATGATAATATA
*
3015327 TATCGTAACATAAAAAATAAATCATTAGATATATATAATTACTAAATTGATATCTTAAAACTCAC
257 TATCGTAACATAAAAAATAAATCATTAGATACATATAATTACTAAATTGATATCTTAAAACTCAC
3015392 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
322 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
* *
3015457 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACGTATTACATTGTATA
387 ATAAATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTGTATA
3015522 AGCGCTACATATTACATCATATTTTTACCTATTATA
452 AGCGCTACATATTACATCATATTTTTACCTATTATA
*
3015558 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAATTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
3015623 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
*
3015688 CAAAAAATTATTTGATTATTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
*
3015753 TAACCAAAGATAATAATAAATATGTAATATATGTTTATTGTTTTAATTTAATGAT-A-ATATACC
196 TAACCAAAGATAATAATAAATATGTAATATATGTTTATTGTTTTAATTTAATGATAATATATATC
3015816 GTAACATAAAAAATAAATCATTAGATACATATAATTACTAAATTGATATCTTAAAACTCACTCAA
261 GTAACATAAAAAATAAATCATTAGATACATATAATTACTAAATTGATATCTTAAAACTCACTCAA
* *
3015881 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAATGATAA
326 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAA
3015946 ATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTGTATAAGCG
391 ATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTGTATAAGCG
* *
3016011 CTACCTATTACATCATATTTTTACTTATTATA
456 CTACATATTACATCATATTTTTACCTATTATA
3016043 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
3016108 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACTTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
**
3016173 CAAAAAATTACCTGATTGTTTTGATATTTTATAAAAT-A-ATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
*
3016236 TAACCAAA-ATAATAA-AAATATGTAATATATGTTTA-TGTTTTAATTTAATAATAATATATATC
196 TAACCAAAGATAATAATAAATATGTAATATATGTTTATTGTTTTAATTTAATGATAATATATATC
* ** * *
3016298 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
261 GTAACATAAAAAATAAATCATTAGATACATATAATTACTAAATTGATATCTTAAAACTCACTCAA
3016363 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTT
326 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTT
3016415 TGACAAGGTA
Statistics
Matches: 825, Mismatches: 28, Indels: 15
0.95 0.03 0.02
Matches are distributed among these distances:
480 16 0.02
481 21 0.03
482 124 0.15
483 33 0.04
484 1 0.00
485 388 0.47
486 1 0.00
487 15 0.02
488 65 0.08
489 16 0.02
490 145 0.18
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.41
Consensus pattern (487 bp):
TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
TAACCAAAGATAATAATAAATATGTAATATATGTTTATTGTTTTAATTTAATGATAATATATATC
GTAACATAAAAAATAAATCATTAGATACATATAATTACTAAATTGATATCTTAAAACTCACTCAA
AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAA
ATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTGTATAAGCG
CTACATATTACATCATATTTTTACCTATTATA
Found at i:3016722 original size:183 final size:182
Alignment explanation
Indices: 3016406--3016848 Score: 728
Period size: 183 Copynumber: 2.4 Consensus size: 182
3016396 AAAAAGTATG
3016406 GACACTTTTTGACAAGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATA
1 GACACTTTTTGACAAGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATA
* * *
3016471 TTAAAAAGTGTCGATATAGGTTGTAGACCTGTTCGCTCATAAAACCGGTATATTTATACCGGTTA
66 TTAAAAAGTGTCGATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATATTTATACCGATTA
*
3016536 TATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATG-TGTAAATGTC
131 TATTACAAAATTATCTATTACATTATAATTCTGGATTCCGATGTTGTAAA--TC
* *
3016589 GACACCTTTTGACAAGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACATAATA
1 GACACTTTTTGACAAGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATA
*
3016654 TTAAAAAGTGTCGATATAGGTTGTAAACCTATTCGCTCATAAAATCGGTATATTTATACCGATTA
66 TTAAAAAGTGTCGATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATATTTATACCGATTA
* *
3016719 TATTACAAAATTATCTATTACATTATAATTCTGGATTCCGATGTTTTTTCAATC
131 TATTACAAAATTATCTATTACATTATAATTCTGGATTCCGATG--TTGTAAATC
*
3016773 GACACTTTTTGA-AATGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAAT
1 GACACTTTTTGACAA-GGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
*
3016837 ATCAAAAAGTGT
65 ATTAAAAAGTGT
3016849 GAAAACTTTG
Statistics
Matches: 243, Mismatches: 13, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
183 168 0.69
184 71 0.29
186 4 0.02
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (182 bp):
GACACTTTTTGACAAGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATA
TTAAAAAGTGTCGATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATATTTATACCGATTA
TATTACAAAATTATCTATTACATTATAATTCTGGATTCCGATGTTGTAAATC
Found at i:3018067 original size:3 final size:3
Alignment explanation
Indices: 3018059--3018097 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
3018049 ACTTGTTTGG
* *
3018059 ATC ATC ATC ATC ATC ATC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
3018098 GTCAGCTTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:3018098 original size:12 final size:12
Alignment explanation
Indices: 3018063--3018101 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
3018053 GTTTGGATCA
*
3018063 TCATCATCATCA
1 TCATCATCATCG
3018075 TCATCATCATCG
1 TCATCATCATCG
*
3018087 TCATCTTCATCG
1 TCATCATCATCG
3018099 TCA
1 TCA
3018102 GCTTCATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.26, C:0.33, G:0.05, T:0.36
Consensus pattern (12 bp):
TCATCATCATCG
Found at i:3019917 original size:200 final size:199
Alignment explanation
Indices: 3019595--3020539 Score: 1574
Period size: 200 Copynumber: 4.7 Consensus size: 199
3019585 AACATTAAAC
* * *
3019595 AGTGTCGATACA-TATTATATACCAATTCTCTCATAAAACC-GTATACTTGTACCGGTTAGATTG
1 AGTGTCGATACATTATT-TAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTA
* *
3019658 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
65 AAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
* **
3019723 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACATCTTA-
130 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACA-CAAAC
3019787 TACAAA
194 TACAAA
*
3019793 AGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTAA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATT-A
3019858 AAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
65 AAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
* ***
3019923 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACATGTTA-
130 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACA-CAAAC
3019987 TACAAA
194 TACAAA
* * *
3019993 AGTGTCCACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTAA
3020058 AAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGG
66 AAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGG
3020123 ATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTA
131 ATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT-
*
3020188 AAAAA
195 ACAAA
*
3020193 AGTGTCGATACATTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATT-A
3020258 AAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
65 AAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
* * *
3020323 GATCGACACTTTATGGTTGAACCCTGTTTGCCATTTATTCTGGACCAGAAATATCGACACAAACT
130 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
*
3020388 ACACA
195 ACAAA
* *
3020393 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATT-A
*
3020458 AAAATTACCTATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
65 AAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
3020523 GATCGACACTTTATGGT
130 GATCGACACTTTATGGT
3020540 ATTCTCTCAT
Statistics
Matches: 712, Mismatches: 29, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
198 33 0.05
199 150 0.21
200 402 0.56
201 127 0.18
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (199 bp):
AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTAA
AAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGG
ATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTA
CAAA
Found at i:3020632 original size:121 final size:123
Alignment explanation
Indices: 3020416--3020660 Score: 440
Period size: 121 Copynumber: 2.0 Consensus size: 123
3020406 TATTTAGACC
* * *
3020416 TATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
1 TATTCTCTCATAAAACCGATATACTTGTACCGATTAGATTGAAAAATTACATATTACATTATACT
3020481 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
*
3020539 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTG-AAAATTACATA-TACATTATACT
1 TATTCTCTCATAAAACCGATATACTTGTACCGATTAGATTGAAAAATTACATATTACATTATACT
3020602 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
3020660 T
1 T
3020661 TGCACCCTGT
Statistics
Matches: 118, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
121 70 0.59
122 10 0.08
123 38 0.32
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (123 bp):
TATTCTCTCATAAAACCGATATACTTGTACCGATTAGATTGAAAAATTACATATTACATTATACT
TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
Found at i:3020800 original size:321 final size:323
Alignment explanation
Indices: 3020216--3020860 Score: 1240
Period size: 321 Copynumber: 2.0 Consensus size: 323
3020206 TATTTAGACA
*
3020216 TATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACT
1 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACT
3020281 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGAACC
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGAACC
*
3020346 CTGTTTGCCATTTATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
131 CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
*
3020411 AGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATT
196 AGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAAATACCTATTACATT
3020476 ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
261 ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
3020539 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTG-AAAATTACATA-TACATTATACT
1 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACT
*
3020602 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGAACC
3020667 CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
131 CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
3020732 AGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAAATACCTATTACATT
196 AGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAAATACCTATTACATT
3020797 ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
261 ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
3020860 T
1 T
3020861 TGCACCCTGT
Statistics
Matches: 318, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
321 267 0.84
322 11 0.03
323 40 0.13
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (323 bp):
TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACT
TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGAACC
CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
AGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAAATACCTATTACATT
ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
Found at i:3020880 original size:200 final size:200
Alignment explanation
Indices: 3020539--3021260 Score: 1358
Period size: 200 Copynumber: 3.6 Consensus size: 200
3020529 CACTTTATGG
* * *
3020539 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTG-AAAATTACATA-TACATTATACT
1 TATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
3020602 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
3020667 CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
131 CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
3020732 AGACC
196 AGACC
* *
3020737 TATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAAATACCTATTACATTATACT
1 TATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
3020802 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
*
3020867 CTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
131 CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
3020932 AGACC
196 AGACC
3020937 TATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
1 TATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
3021002 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
*
3021067 CTGTTTGCCATTTATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
131 CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
3021132 AGACC
196 AGACC
*
3021137 TATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
1 TATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
3021202 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGT
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGT
3021261 ATTCTCTCAT
Statistics
Matches: 511, Mismatches: 11, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
198 38 0.07
199 9 0.02
200 464 0.91
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.37
Consensus pattern (200 bp):
TATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
AGACC
Found at i:3021051 original size:521 final size:523
Alignment explanation
Indices: 3020016--3021060 Score: 1959
Period size: 521 Copynumber: 2.0 Consensus size: 523
3020006 TATTTAGACC
*
3020016 TATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAATTACATATTACATTATACTT
1 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAATTACATATTACATTATACTT
3020081 TTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
66 TTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
3020146 TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAAGTGTCGATACATTATTT
131 TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAAGTGTCGATACATTATTT
* *
3020211 AGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATT
196 AGACATATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAAATACATATTACATT
3020276 ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTT
261 ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTT
* *
3020341 GAACCCTGTTTGCCATTTATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACAT
326 GAACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGATACAT
*
3020406 TATTTAGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTACCTATT
391 TATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATT
3020471 ACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
456 ACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
3020536 TGG
521 TGG
3020539 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAATTACATA-TACATTATACTT
1 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAATTACATATTACATTATACTT
3020603 TTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
66 TTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
* * *
3020668 TGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACT-ACACAAGTGTCGATACATTATTT
131 TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAAGTGTCGATACATTATTT
* * *
3020732 AGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAAATACCTATTACATT
196 AGACATATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAAATACATATTACATT
3020797 ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTT
261 ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTT
*
3020862 GCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGATACAT
326 GAACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGATACAT
3020927 TATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATT
391 TATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATT
3020992 ACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
456 ACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
3021057 TGG
521 TGG
3021060 T
1 T
3021061 TGCACCCTGT
Statistics
Matches: 509, Mismatches: 13, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
521 341 0.67
522 117 0.23
523 51 0.10
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.37
Consensus pattern (523 bp):
TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAATTACATATTACATTATACTT
TTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAAGTGTCGATACATTATTT
AGACATATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAAATACATATTACATT
ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTT
GAACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGATACAT
TATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATT
ACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
TGG
Found at i:3021241 original size:721 final size:720
Alignment explanation
Indices: 3019816--3021783 Score: 3556
Period size: 721 Copynumber: 2.7 Consensus size: 720
3019806 TATTTAGACC
* *
3019816 TATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTAAAAAATTACATATTACATTATACT
1 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATT-GAAAATTACATATTACATTATACT
3019881 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
65 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
* * *** * * *
3019946 CTGTTTGCCATTCATTATGGACCAAAAATATCGACATGTTA-TACAAAAGTGTCCACACATTATT
130 CTGTTTGCCATTCATTCTGGACCAGAAATATCGACA-CAAACTACACAAGTGTCGATACATTATT
* * *
3020010 TAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAATTACATATTACATT
194 TAGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATAC-TATTACATT
3020075 ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTT
258 ATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTT
* *
3020140 GCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAAGTGTCGATACA
323 GCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT-ACACAAGTGTCGATACA
* * *
3020205 TTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATAT
387 TTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTAT
3020270 TACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTT
452 TACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTT
*
3020335 ATGGTTGAACCCTGTTTGCCATTTATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCG
517 ATGGTTGCACCCTGTTTGCCATTTATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCG
3020400 ATACATTATTTAGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTA
582 ATACATTATTTAGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTA
3020465 CCTATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGAC
647 CCTATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGAC
3020530 ACTTTATGG
712 ACTTTATGG
3020539 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAATTACATA-TACATTATACTT
1 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAATTACATATTACATTATACTT
3020603 TTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
66 TTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
3020668 TGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTTA
131 TGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTTA
3020733 GACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAAATACCTATTACATTA
196 GACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTG-AAAAATA-CTATTACATTA
3020798 TACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTG
259 TACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTG
3020863 CACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGATACATT
324 CACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGATACATT
3020928 ATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTA
389 ATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTA
3020993 CATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTAT
454 CATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTAT
3021058 GGTTGCACCCTGTTTGCCATTTATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGAT
519 GGTTGCACCCTGTTTGCCATTTATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGAT
3021123 ACATTATTTAGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTACC
584 ACATTATTTAGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTACC
3021188 TATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACAC
649 TATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACAC
3021253 TTTATGG
714 TTTATGG
3021260 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACT
1 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTG-AAAATTACATATTACATTATACT
3021325 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
65 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
3021390 CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCG-TACATT-TTT
130 CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
* *
3021453 AGACCTATTCTCTCATAAAACTGGTATACTTATACCGATTA-ATTGAAAAAT--TA--CCA-T-T
195 AGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATACTATTACATTAT
3021511 ACTTTTGGGTTTC---G---ATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGC
260 ACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGC
3021570 ACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGATACATTA
325 ACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGATACATTA
3021635 TTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTAC
390 TTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTAC
3021700 ATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATG
455 ATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATG
*
3021765 GTTGCACCCTATTTGCCAT
520 GTTGCACCCTGTTTGCCAT
3021784 ATTGTAAATT
Statistics
Matches: 1218, Mismatches: 22, Indels: 27
0.96 0.02 0.02
Matches are distributed among these distances:
706 258 0.21
709 1 0.00
712 14 0.01
713 1 0.00
714 2 0.00
716 2 0.00
719 6 0.00
720 5 0.00
721 604 0.50
722 155 0.13
723 170 0.14
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (720 bp):
TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAATTACATATTACATTATACTT
TTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
TGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATACATTATTTA
GACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATACTATTACATTATA
CTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCA
CCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGATACATTAT
TTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACA
TTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
TTGCACCCTGTTTGCCATTTATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGATAC
ATTATTTAGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTACCTA
TTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTT
TATGG
Found at i:3021356 original size:123 final size:123
Alignment explanation
Indices: 3021137--3021383 Score: 458
Period size: 123 Copynumber: 2.0 Consensus size: 123
3021127 TATTTAGACC
* * *
3021137 TATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
1 TATTCTCTCATAAAACCGATATACTTGTACCGATTAGATTGAAAAATTACATATTACATTATACT
3021202 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
*
3021260 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACT
1 TATTCTCTCATAAAACCGATATACTTGTACCGATTAGATTGAAAAATTACATATTACATTATACT
3021325 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
3021383 T
1 T
3021384 TGCACCCTGT
Statistics
Matches: 120, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
123 120 1.00
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (123 bp):
TATTCTCTCATAAAACCGATATACTTGTACCGATTAGATTGAAAAATTACATATTACATTATACT
TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGG
Found at i:3021751 original size:200 final size:198
Alignment explanation
Indices: 3021260--3021783 Score: 862
Period size: 183 Copynumber: 2.7 Consensus size: 198
3021250 CACTTTATGG
* * *
3021260 TATTCTCTCATAAAACCGATATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACT
1 TATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
3021325 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
*
3021390 CTGTTTGCCATTCATTCTGGACCAGAAATATCGACACAAACTACACAAGTGTCGTACATTTTTAG
131 CTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGTACATTTTTAG
3021455 ACC
196 ACC
* *
3021458 TATTCTCTCATAAAACTGGTATACTTATACCGATTA-ATTGAAAAATTA-C-----CA-T-TACT
1 TATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
3021514 TTTGGGTTTC---G---ATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
3021573 CTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGATACATTATTT
131 CTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCG-TACATT-TTT
3021638 AGACC
194 AGACC
3021643 TATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
1 TATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
3021708 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
66 TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
*
3021773 CTATTTGCCAT
131 CTGTTTGCCAT
3021784 ATTGTAAATT
Statistics
Matches: 300, Mismatches: 9, Indels: 32
0.88 0.03 0.09
Matches are distributed among these distances:
183 101 0.34
184 6 0.02
185 42 0.14
186 13 0.04
187 1 0.00
189 14 0.05
190 1 0.00
191 2 0.01
192 2 0.01
193 1 0.00
194 14 0.05
197 13 0.04
198 32 0.11
200 58 0.19
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (198 bp):
TATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACT
TTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
CTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACACAAGTGTCGTACATTTTTAG
ACC
Found at i:3021907 original size:18 final size:18
Alignment explanation
Indices: 3021884--3021944 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
3021874 TCTCATTCAT
*
3021884 AATTATATTCACATACAA
1 AATTATAATCACATACAA
**
3021902 AATTATAAATCGTATACAA
1 AATTAT-AATCACATACAA
**
3021921 AATTATAAATCTTATACAA
1 AATTAT-AATCACATACAA
3021940 AATTA
1 AATTA
3021945 ACCCTACATT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
18 6 0.16
19 32 0.84
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (18 bp):
AATTATAATCACATACAA
Found at i:3021920 original size:19 final size:19
Alignment explanation
Indices: 3021896--3021944 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
3021886 TTATATTCAC
3021896 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
3021915 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
3021934 ATACAAAATTA
1 ATACAAAATTA
3021945 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:3023772 original size:33 final size:33
Alignment explanation
Indices: 3023735--3023800 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
3023725 CATCTTAATA
*
3023735 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
3023768 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
3023801 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:3023859 original size:21 final size:21
Alignment explanation
Indices: 3023834--3023898 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
3023824 CCCCTTATGC
* *
3023834 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
3023855 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
3023876 CTATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
3023897 CT
1 CT
3023899 TGATTGTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.17, C:0.31, G:0.11, T:0.42
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:3026148 original size:17 final size:18
Alignment explanation
Indices: 3026126--3026168 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
3026116 ATATATTTGG
3026126 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
3026143 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
3026163 TATCAT
1 TATCAT
3026169 ATTTTTATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:3026339 original size:20 final size:20
Alignment explanation
Indices: 3026314--3026373 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
3026304 CGGTAACGTT
3026314 TTACCGGTTTTATCATTTTG
1 TTACCGGTTTTATCATTTTG
3026334 TTACCGGTTTTATCATATTT-
1 TTACCGGTTTTATCAT-TTTG
*
3026354 TTACCTGG-TATATCATTTTG
1 TTACC-GGTTTTATCATTTTG
3026374 GATCGATACA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
19 3 0.08
20 28 0.78
21 5 0.14
ACGTcount: A:0.18, C:0.15, G:0.13, T:0.53
Consensus pattern (20 bp):
TTACCGGTTTTATCATTTTG
Found at i:3026402 original size:181 final size:182
Alignment explanation
Indices: 3026098--3026570 Score: 671
Period size: 181 Copynumber: 2.6 Consensus size: 182
3026088 CGTACTTACG
** * *
3026098 AAAGTATCGACACTTTCAATATATTTGGTATCATTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * * *
3026163 TATCATATTTTTATCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTAT
66 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATATATTTTTTAAAAGTATCGACACATTAT
* *
3026228 AGGCGCTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
*
3026279 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGTTACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
3026344 TATCATATTTTTACCTGGTATATCATTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATATATTTTTTAAAAGTATCGACACATTAT
* ** **
3026409 ATGATTTAAAACTGCTTCTCTTTTAAATTCATGAAGTGTCGATCCTTATATT
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * * * **
3026461 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTTACCGGTTTTATCATTTCAATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
3026526 TGTCATACTTTTACC-GGTTATATCGTTTTGGATCGATATATTTTT
66 TATCATATTTTTACCTGG-TATATCGTTTTGGATCGATATATTTTT
3026571 AATTTGGATC
Statistics
Matches: 259, Mismatches: 31, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
181 163 0.63
182 96 0.37
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.44
Consensus pattern (182 bp):
AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGGTATATCGTTTTGGATCGATATATTTTTTAAAAGTATCGACACATTAT
AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:3027965 original size:3 final size:3
Alignment explanation
Indices: 3027957--3027984 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
3027947 TCTGTCTTTA
3027957 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
3027985 TTTAGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:3029258 original size:3 final size:3
Alignment explanation
Indices: 3029250--3029283 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
3029240 TGGAGACAAA
3029250 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
3029284 GATATTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:3029931 original size:2 final size:2
Alignment explanation
Indices: 3029924--3029957 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
3029914 TAATATAAAT
3029924 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3029958 AATTTCTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3036512 original size:25 final size:25
Alignment explanation
Indices: 3036484--3036582 Score: 83
Period size: 25 Copynumber: 3.8 Consensus size: 25
3036474 ATATCTAATA
*
3036484 ATTTAAGATAAAAATAAAATATATT
1 ATTTAAGTTAAAAATAAAATATATT
** * *
3036509 ATTTAAGTTATGACTGAAATATATT
1 ATTTAAGTTAAAAATAAAATATATT
*
3036534 TTTTAAGTT-AAAATAAGAATAATATAT
1 ATTTAAGTTAAAAATAA-AAT-ATAT-T
*
3036561 ATTTTTAAGTTAAAGATAAAAT
1 A--TTTAAGTTAAAAATAAAAT
3036583 TAAATATATT
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
24 3 0.05
25 31 0.55
26 4 0.07
27 1 0.02
29 11 0.20
30 6 0.11
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.40
Consensus pattern (25 bp):
ATTTAAGTTAAAAATAAAATATATT
Found at i:3036561 original size:85 final size:84
Alignment explanation
Indices: 3036441--3036597 Score: 210
Period size: 85 Copynumber: 1.9 Consensus size: 84
3036431 TAAGAACGAT
* * *
3036441 ATATATTTTTTCAAGTTAATATTAGAATAAAATATATCTAATAA-TTTAAGATAAAAATAAAATA
1 ATATATTTTTTCAAGTTAAAATAAGAATAAAATATAT-TAATAAGTTAAAGAT-AAAATAAAATA
3036505 TATTATTTAAGTTATGACTGAA
64 TATT-TTTAAGTTATGACTGAA
* ** *
3036527 ATATATTTTTT-AAGTTAAAATAAGAATAATATATATTTTTAAGTTAAAGATAAAATTAAATATA
1 ATATATTTTTTCAAGTTAAAATAAGAATAAAATATATTAATAAGTTAAAGATAAAATAAAATATA
3036591 TTTTTAA
66 TTTTTAA
3036598 ATCAAGATAA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
83 5 0.08
84 18 0.29
85 29 0.46
86 11 0.17
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (84 bp):
ATATATTTTTTCAAGTTAAAATAAGAATAAAATATATTAATAAGTTAAAGATAAAATAAAATATA
TTTTTAAGTTATGACTGAA
Found at i:3036563 original size:30 final size:30
Alignment explanation
Indices: 3036394--3036623 Score: 174
Period size: 31 Copynumber: 7.8 Consensus size: 30
3036384 AAAAAAAAAC
3036394 TTAAGATAAGAATAATATATATTTTTTCAAG
1 TTAAGATAAGAATAATATATATTTTTT-AAG
**
3036425 TTAAGATAAGAACGATATATATTTTTTCAAG
1 TTAAGATAAGAATAATATATATTTTTT-AAG
* * * * ** *
3036456 TTAATATTAGAATAAAATATATCTAATAAT
1 TTAAGATAAGAATAATATATATTTTTTAAG
* * *
3036486 TTAAGATAAAAATAAAATATATTATTTAAG
1 TTAAGATAAGAATAATATATATTTTTTAAG
*
3036516 TT---AT--GACTGAA-ATATATTTTTTAAG
1 TTAAGATAAGAAT-AATATATATTTTTTAAG
*
3036541 TTAAAATAAGAATAATATATA-TTTTTAAG
1 TTAAGATAAGAATAATATATATTTTTTAAG
*
3036570 TTAAAGATAA-AATTAA-ATATA-TTTTTAAA
1 TT-AAGATAAGAA-TAATATATATTTTTTAAG
* * * *
3036599 TCAAGATAAAAATAAAAAATATTTT
1 TTAAGATAAGAATAATATATATTTT
3036624 GAAAATTAAT
Statistics
Matches: 160, Mismatches: 27, Indels: 25
0.75 0.13 0.12
Matches are distributed among these distances:
25 17 0.11
26 2 0.01
27 2 0.01
28 12 0.08
29 33 0.21
30 46 0.29
31 48 0.30
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (30 bp):
TTAAGATAAGAATAATATATATTTTTTAAG
Found at i:3036610 original size:29 final size:29
Alignment explanation
Indices: 3036525--3036623 Score: 87
Period size: 29 Copynumber: 3.4 Consensus size: 29
3036515 GTTATGACTG
* *
3036525 AAATATATTTTTTAAGTTAAA-ATAAGAA-T
1 AAATATA-TTTTTAA-ATAAAGATAAAAATT
*
3036554 AATATATATTTTTAAGTTAAAGAT-AAAATT
1 AA-ATATATTTTTAA-ATAAAGATAAAAATT
* *
3036584 AAATATATTTTTAAATCAAGATAAAAATA
1 AAATATATTTTTAAATAAAGATAAAAATT
*
3036613 AAAAATATTTT
1 AAATATATTTT
3036624 GAAAATTAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
28 6 0.10
29 45 0.74
30 10 0.16
ACGTcount: A:0.54, C:0.01, G:0.05, T:0.40
Consensus pattern (29 bp):
AAATATATTTTTAAATAAAGATAAAAATT
Found at i:3036613 original size:58 final size:54
Alignment explanation
Indices: 3036488--3036623 Score: 139
Period size: 58 Copynumber: 2.4 Consensus size: 54
3036478 CTAATAATTT
* * * *
3036488 AAGATAAAAATAAAATATATTATTTAAGTTATGACTGAAATATATTTTTTAAGTT
1 AAGATAAAAATAAAATATATT-TTTAAGTTAAGACTAAAATATATTTTTTAAATC
* * *
3036543 AAAATAAGAATAATATATATTTTTAAGTTAAAGA-TAAAATTAAATATATTTTTAAATC
1 AAGATAAAAATAAAATATATTTTTAAGTT-AAGACTAAAA-T--ATAT-TTTTTAAATC
*
3036601 AAGATAAAAATAAAAAATATTTT
1 AAGATAAAAATAAAATATATTTT
3036624 GAAAATTAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
54 12 0.18
55 22 0.34
57 4 0.06
58 27 0.42
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.39
Consensus pattern (54 bp):
AAGATAAAAATAAAATATATTTTTAAGTTAAGACTAAAATATATTTTTTAAATC
Found at i:3040469 original size:3 final size:3
Alignment explanation
Indices: 3040422--3040454 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
3040412 TTATATTAAA
*
3040422 ATT A-T ATT ATT ATT ATT ATT AAT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
3040455 ATGTTACATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:3054617 original size:54 final size:54
Alignment explanation
Indices: 3054535--3054723 Score: 256
Period size: 54 Copynumber: 3.5 Consensus size: 54
3054525 TAGTGAAGCA
*
3054535 GAAGAATATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
1 GAAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * *
3054589 GAAGAAGATGTCCGAGTTTTATACTCCCTAGAGAAAGAGGGAGCAAACCCGTTT
1 GAAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * * **
3054643 GAAGAAGATATTCGAGTTCTATACTCTCT-GAAGAAAGAGGGAGCGAACCCATAA
1 GAAGAAGATGTTCGAGTTCTATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTT
3054697 GAAGAAGATTGTTCGAG-TCTTATACTC
1 GAAGAAGA-TGTTCGAGTTC-TATACTC
3054724 TCTGAAGGAA
Statistics
Matches: 119, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
53 1 0.01
54 104 0.87
55 14 0.12
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (54 bp):
GAAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
Found at i:3054739 original size:55 final size:53
Alignment explanation
Indices: 3054534--3054849 Score: 228
Period size: 55 Copynumber: 5.8 Consensus size: 53
3054524 GTAGTGAAGC
* * * *
3054534 AGAAGAATATGTTCGAGT-TCTATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTT
1 AGAAGAAGATGTTCGAGTCT-TATACTCTCTGA-AGAAAGAGGGAGCAAACCC-AT
* * * * *
3054588 TGAAGAAGATGTCCGAGTTTTATACTCCCT-AGAGAAAGAGGGAGCAAACCCGTT
1 AGAAGAAGATGTTCGAGTCTTATACTCTCTGA-AGAAAGAGGGAGCAAACCC-AT
* * *
3054642 TGAAGAAGATATTCGAGT-TCTATACTCTCTGAAGAAAGAGGGAGCGAACCCAT
1 AGAAGAAGATGTTCGAGTCT-TATACTCTCTGAAGAAAGAGGGAGCAAACCCAT
* * * *
3054695 AAGAAGAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGAT
1 -AGAAGAAGA-TGTTCGAGTCTTATACTCTCTGAAGAAAGAGGGAGCAAAC-CCAT
** * * * *
3054751 AGTTGAAGATTGTTCGAGTCTTATACTCTCTAAAGGAATAGGGAG-AAGACACGAT
1 AGAAGAAGA-TGTTCGAGTCTTATACTCTCTGAAGAAAGAGGGAGCAA-AC-CCAT
* ** * * *
3054806 TGTTGAAGATTGTTCAAGTCTTATACTCTCTGAAGGAATAGGGA
1 AGAAGAAGA-TGTTCGAGTCTTATACTCTCTGAAGAAAGAGGGA
3054850 ACATAAACGA
Statistics
Matches: 231, Mismatches: 23, Indels: 15
0.86 0.09 0.06
Matches are distributed among these distances:
53 2 0.01
54 100 0.43
55 125 0.54
56 4 0.02
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.25
Consensus pattern (53 bp):
AGAAGAAGATGTTCGAGTCTTATACTCTCTGAAGAAAGAGGGAGCAAACCCAT
Found at i:3054865 original size:55 final size:54
Alignment explanation
Indices: 3054700--3054893 Score: 259
Period size: 55 Copynumber: 3.6 Consensus size: 54
3054690 CCCATAAGAA
*
3054700 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATAGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAACAGACACGAT-GTT
*
3054755 GAAGATTGTTCGAGTCTTATACTCTCTAAAGGAATAGGGAGA-AGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGA-ACAGACACGA-TGTT
* * *
3054810 GAAGATTGTTCAAGTCTTATACTCTCTGAAGGAATAGGGAACATAAACGAGTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAACAGACACGA-TGTT
* *
3054865 GAAGA-TGTTTGAGT-TCTATACTCCCTGAA
1 GAAGATTGTTCGAGTCT-TATACTCTCTGAA
3054894 AGAAAGAGGG
Statistics
Matches: 125, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
53 1 0.01
54 20 0.16
55 103 0.82
56 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (54 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAACAGACACGATGTT
Found at i:3054942 original size:110 final size:108
Alignment explanation
Indices: 3054542--3054934 Score: 318
Period size: 110 Copynumber: 3.6 Consensus size: 108
3054532 GCAGAAGAAT
* * * * *
3054542 ATGTTCGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA-TGTCCGAG
1 ATGTTCGAGTTCTATACTCTCTGAAAGAAAGAGGGAACGAACCC-ATTGAA-AAGATTGTTCGAG
* * * * * * * * **
3054605 TTTTATACTCCCT-AGAGAAAGAGGGAGCA-AACCCGTTTGAAGAAG
64 TCTTATACTCTCTGA-AGGAATAGGGAACAGAA-ACGATAGTTGAAG
* * *
3054650 ATATTCGAGTTCTATACTCTCTG-AAGAAAGAGGGAGCGAACCCATAAGAAGAAGATTGTTCGAG
1 ATGTTCGAGTTCTATACTCTCTGAAAGAAAGAGGGAACGAACCCAT-TGAA-AAGATTGTTCGAG
* *
3054714 TCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATAGTTGAAG
64 TCTTATACTCTCTGAAGGAATAGGGAACAGAAACGATAGTTGAAG
* * * * **
3054759 ATTGTTCGAG-TCTTATACTCTCT-AAAGGAATAGGGAGAAG-ACACGATTGTTGAAGATTGTTC
1 A-TGTTCGAGTTC-TATACTCTCTGAAAGAAAGAGGGA-ACGAAC-CCATTG-AAAAGATTGTTC
* *
3054821 AAGTCTTATACTCTCTGAAGGAATAGGGAACATAAACGAGT-GTTGAAG
61 GAGTCTTATACTCTCTGAAGGAATAGGGAACAGAAACGA-TAGTTGAAG
* * *
3054869 ATGTTTGAGTTCTATACTCCCTGAAAGAAAGAGGGAACGAACCCATTGGCAAAAGACTGTTCGAG
1 ATGTTCGAGTTCTATACTCTCTGAAAGAAAGAGGGAACGAACCCATT-G-AAAAGATTGTTCGAG
3054934 T
64 T
3054935 TCCATACTTC
Statistics
Matches: 229, Mismatches: 40, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
107 1 0.00
108 47 0.21
109 63 0.28
110 113 0.49
111 5 0.02
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (108 bp):
ATGTTCGAGTTCTATACTCTCTGAAAGAAAGAGGGAACGAACCCATTGAAAAGATTGTTCGAGTC
TTATACTCTCTGAAGGAATAGGGAACAGAAACGATAGTTGAAG
Found at i:3058282 original size:21 final size:20
Alignment explanation
Indices: 3058196--3058353 Score: 77
Period size: 21 Copynumber: 7.8 Consensus size: 20
3058186 AAATGACCAA
**
3058196 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
3058215 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
3058235 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
3058255 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
3058276 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
3058297 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* * *
3058317 CCAGAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
3058338 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
3058354 ACACATAAAT
Statistics
Matches: 102, Mismatches: 31, Indels: 11
0.71 0.22 0.08
Matches are distributed among these distances:
19 16 0.16
20 40 0.39
21 46 0.45
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:3058346 original size:20 final size:20
Alignment explanation
Indices: 3058321--3058514 Score: 87
Period size: 20 Copynumber: 9.7 Consensus size: 20
3058311 GATTTTCCAG
* *
3058321 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
3058341 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
3058361 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
3058381 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* *
3058401 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
3058421 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
3058441 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
3058461 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
3058482 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
3058502 AATCGCAACGCGA
1 AATCGCAACGCGA
3058515 TATTTAAAGC
Statistics
Matches: 149, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
19 3 0.02
20 130 0.87
21 15 0.10
22 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.19, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:3058368 original size:40 final size:39
Alignment explanation
Indices: 3058321--3058514 Score: 217
Period size: 40 Copynumber: 4.8 Consensus size: 39
3058311 GATTTTCCAG
* ** *
3058321 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAAC-CATA
* * *
3058361 AATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACCATA
* * *
3058401 AATCGCAACGCGTATCCGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACCATA
* ** *
3058441 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAA-CCAT-A
3058482 AATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGA
3058515 TATTTAAAGC
Statistics
Matches: 132, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 98 0.74
41 33 0.25
ACGTcount: A:0.36, C:0.27, G:0.19, T:0.19
Consensus pattern (39 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAACCATA
Found at i:3058404 original size:60 final size:60
Alignment explanation
Indices: 3058321--3058513 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
3058311 GATTTTCCAG
* ** *
3058321 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
* * * *
3058381 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATC-CGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACACATAAATCGCAACGCGTATCCGTA
* ** *
3058441 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAACACAT-AAATCGCAACGCGTATCCGTA
3058502 AATCGCAACGCG
1 AATCGCAACGCG
3058514 ATATTTAAAG
Statistics
Matches: 113, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
59 1 0.01
60 79 0.70
61 33 0.29
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
Done.