Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002890.1 Hibiscus syriacus cultivar Beakdansim tig00005974_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5046466
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 14 of 21
Found at i:3295886 original size:19 final size:19
Alignment explanation
Indices: 3295862--3295906 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
3295852 AGAAAAGAAA
*
3295862 AATAATAATAATAAATACT
1 AATAATAATAATAAAGACT
*
3295881 AATAAT-ATAATATAGACT
1 AATAATAATAATAAAGACT
3295899 ATATAATA
1 A-ATAATA
3295907 TATATATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (19 bp):
AATAATAATAATAAAGACT
Found at i:3296049 original size:39 final size:37
Alignment explanation
Indices: 3295929--3296273 Score: 228
Period size: 39 Copynumber: 9.3 Consensus size: 37
3295919 AAAAAAATCC
* *
3295929 AAAACCATATATTATAT-AGTTTTCAAAAATGATTTT
1 AAAAACATATATTATATAAGTTTTCAAAAATGTTTTT
*
3295965 --AAA-A-ATATTATATGAGTTTTCAAAACATGTTTTT
1 AAAAACATATATTATATAAGTTTTCAAAA-ATGTTTTT
*
3295999 -AAAACTATATATTATATAATTTTTCAAAAATGTTTTTTTT
1 AAAAAC-ATATATTATATAAGTTTTCAAAAATG---TTTTT
3296039 AAAAAC---TA-TATATAAGTTTTCAAAAATG-TTTT
1 AAAAACATATATTATATAAGTTTTCAAAAATGTTTTT
*
3296071 AAAAACTATATATTATATATAATTTTTCAAAAATG-TTTT
1 AAAAAC-ATATA-T-TATATAAGTTTTCAAAAATGTTTTT
* *
3296110 AAAAACTATACATTATATATA-TATATTC-AAAATGTTTTC
1 AAAAAC-ATATATTATATA-AGT-T-TTCAAAAATGTTTTT
* *
3296149 AAAAACTATATATTATATACTTA-TTTTC-AAAATATTTTC
1 AAAAAC-ATATATTATATA---AGTTTTCAAAAATGTTTTT
3296188 AAAAACTATATATTATATACTTA-TTTTC-AAAATG-TTTT
1 AAAAAC-ATATATTATATA---AGTTTTCAAAAATGTTTTT
* * *
3296226 AAAAACTTATATAATATATA-TTTTCAAAAAAGTATTTT
1 AAAAACATATATTATATA-AGTTTTCAAAAATGT-TTTT
3296264 CAAAAA-ATAT
1 -AAAAACATAT
3296274 TTTCAAAAAC
Statistics
Matches: 266, Mismatches: 16, Indels: 52
0.80 0.05 0.16
Matches are distributed among these distances:
32 19 0.07
33 12 0.05
34 9 0.03
35 10 0.04
36 26 0.10
37 23 0.09
38 44 0.17
39 109 0.41
40 6 0.02
41 8 0.03
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.44
Consensus pattern (37 bp):
AAAAACATATATTATATAAGTTTTCAAAAATGTTTTT
Found at i:3296059 original size:36 final size:33
Alignment explanation
Indices: 3295937--3296114 Score: 155
Period size: 36 Copynumber: 5.0 Consensus size: 33
3295927 CCAAAACCAT
*
3295937 ATATTATAT-AGTTTTCAAAAATGATTTTAAAA
1 ATATTATATAAGTTTTCAAAAATGTTTTTAAAA
*
3295969 ATATTATATGAGTTTTCAAAACATGTTTTTAAAACTA
1 ATATTATATAAGTTTTCAAAA-ATGTTTTT-AAA--A
*
3296006 TATATTATATAATTTTTCAAAAATGTTTTTTTTAAAA
1 -ATATTATATAAGTTTTCAAAAATG---TTTTTAAAA
*
3296043 ACTA-TATATAAGTTTTCAAAAATGTTTTAAAAACTA
1 A-TATTATATAAGTTTTCAAAAATGTTTT-TAAA--A
*
3296079 TATATTATATATAATTTTTCAAAAATG-TTTTAAAA
1 -ATA-T-TATATAAGTTTTCAAAAATGTTTTTAAAA
3296114 A
1 A
3296115 CTATACATTA
Statistics
Matches: 122, Mismatches: 7, Indels: 32
0.76 0.04 0.20
Matches are distributed among these distances:
32 9 0.07
33 15 0.12
34 11 0.09
35 4 0.03
36 23 0.19
37 11 0.09
38 22 0.18
39 22 0.18
40 5 0.04
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (33 bp):
ATATTATATAAGTTTTCAAAAATGTTTTTAAAA
Found at i:3296156 original size:78 final size:73
Alignment explanation
Indices: 3295929--3296255 Score: 297
Period size: 78 Copynumber: 4.4 Consensus size: 73
3295919 AAAAAAATCC
* * *
3295929 AAAACCATATA-T-TATATAGTTTTCAAAAATGATTTT-AAAA--AT-ATTATATGAGT-TTTCA
1 AAAACTATATATTATATATAATTTTCAAAAATG-TTTTAAAAACTATAATTATAT-ATTATTTC-
*
3295987 AAACATGTTTTT
63 AAA-ATGTTTTA
* *
3295999 AAAACTATATATTATATA-ATTTTTCAAAAATGTTTTTTTTAAAAACTAT-A-TATA-AGT-TTT
1 AAAACTATATATTATATATAATTTTCAAAAATG----TTTTAAAAACTATAATTATATATTATTT
3296059 CAAAAATGTTTTA
62 C-AAAATGTTTTA
3296072 AAAACTATATATTATATATAATTTTTCAAAAATGTTTTAAAAACTATACATTATATATATATATT
1 AAAACTATATATTATATATAA-TTTTCAAAAATGTTTTAAAAACTATA-ATTATATAT-TAT-TT
3296137 CAAAATGTTTTCA
62 CAAAATGTTTT-A
* *
3296150 AAAACTATATATTATATACTTATTTTCAAAATAT-TTTCAAAAACTATATATTATATACTTATTT
1 AAAACTATATATTATATA-TAATTTTCAAAA-ATGTTTTAAAAACTATA-ATTATATA-TTA-TT
3296214 TCAAAATGTTTTA
61 TCAAAATGTTTTA
*
3296227 AAAACT-TATATAATATAT-ATTTTCAAAAA
1 AAAACTATATATTATATATAATTTTCAAAAA
3296256 AGTATTTTCA
Statistics
Matches: 225, Mismatches: 10, Indels: 41
0.82 0.04 0.15
Matches are distributed among these distances:
70 10 0.04
71 27 0.12
72 4 0.02
73 27 0.12
74 30 0.13
75 18 0.08
76 15 0.07
77 21 0.09
78 67 0.30
79 6 0.03
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.44
Consensus pattern (73 bp):
AAAACTATATATTATATATAATTTTCAAAAATGTTTTAAAAACTATAATTATATATTATTTCAAA
ATGTTTTA
Found at i:3296274 original size:13 final size:13
Alignment explanation
Indices: 3296243--3296282 Score: 71
Period size: 13 Copynumber: 3.0 Consensus size: 13
3296233 TATATAATAT
3296243 ATATTTTCAAAAA
1 ATATTTTCAAAAA
3296256 AGTATTTTCAAAAA
1 A-TATTTTCAAAAA
3296270 ATATTTTCAAAAA
1 ATATTTTCAAAAA
3296283 CTATATATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 13 0.50
14 13 0.50
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.38
Consensus pattern (13 bp):
ATATTTTCAAAAA
Found at i:3296308 original size:53 final size:49
Alignment explanation
Indices: 3296209--3296308 Score: 137
Period size: 53 Copynumber: 2.0 Consensus size: 49
3296199 ATTATATACT
*
3296209 TATTTTCAAAATGTTTTAAAAACTTATATAATATATATTTTCAAAAAAG
1 TATTTTCAAAATATTTTAAAAACTTATATAATATATATTTTCAAAAAAG
* *
3296258 TATTTTCAAAAAATATTTTCAAAAACTATATATTATATATATTTTTAAAAA
1 TATTTTC--AAAATATTTT-AAAAACT-TATATAATATATATTTTCAAAAA
3296309 TCATTTTCTA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
49 7 0.16
51 9 0.20
52 7 0.16
53 21 0.48
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (49 bp):
TATTTTCAAAATATTTTAAAAACTTATATAATATATATTTTCAAAAAAG
Found at i:3306515 original size:155 final size:155
Alignment explanation
Indices: 3306309--3306607 Score: 598
Period size: 155 Copynumber: 1.9 Consensus size: 155
3306299 ACTCGGTCTT
3306309 GATGGAATCAGTCAGGGATGCTATCTAAAAATTTAAACCAAATGAAACAAACCAAAAGCATAGAT
1 GATGGAATCAGTCAGGGATGCTATCTAAAAATTTAAACCAAATGAAACAAACCAAAAGCATAGAT
3306374 AATATAAATTTCAATAATTGAAACAAACTCAAGCATCCAAATTCTAACCGAAATAATCATGGAAC
66 AATATAAATTTCAATAATTGAAACAAACTCAAGCATCCAAATTCTAACCGAAATAATCATGGAAC
3306439 AACATAAAAACAAACCGAAATAATC
131 AACATAAAAACAAACCGAAATAATC
3306464 GATGGAATCAGTCAGGGATGCTATCTAAAAATTTAAACCAAATGAAACAAACCAAAAGCATAGAT
1 GATGGAATCAGTCAGGGATGCTATCTAAAAATTTAAACCAAATGAAACAAACCAAAAGCATAGAT
3306529 AATATAAATTTCAATAATTGAAACAAACTCAAGCATCCAAATTCTAACCGAAATAATCATGGAAC
66 AATATAAATTTCAATAATTGAAACAAACTCAAGCATCCAAATTCTAACCGAAATAATCATGGAAC
3306594 AACATAAAAACAAA
131 AACATAAAAACAAA
3306608 ATGAAAATCG
Statistics
Matches: 144, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 144 1.00
ACGTcount: A:0.51, C:0.17, G:0.11, T:0.21
Consensus pattern (155 bp):
GATGGAATCAGTCAGGGATGCTATCTAAAAATTTAAACCAAATGAAACAAACCAAAAGCATAGAT
AATATAAATTTCAATAATTGAAACAAACTCAAGCATCCAAATTCTAACCGAAATAATCATGGAAC
AACATAAAAACAAACCGAAATAATC
Found at i:3307692 original size:21 final size:21
Alignment explanation
Indices: 3307638--3307695 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
3307628 AAACCATTCA
*
3307638 GGGGGAATCGGTACCCCCTTG
1 GGGGGAATCGGTTCCCCCTTG
3307659 GGGGGAATCGGTTCCCCCTTG
1 GGGGGAATCGGTTCCCCCTTG
3307680 GGGGGAATCGGTTCCC
1 GGGGGAATCGGTTCCC
3307696 TATGAGCAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.12, C:0.28, G:0.40, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCCCTTG
Found at i:3310330 original size:21 final size:21
Alignment explanation
Indices: 3310301--3310354 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
3310291 CCAGGTGGGT
3310301 ATCGATTCCC-C-TGTGGGGGG
1 ATCGATTCCCTCATG-GGGGGG
*
3310321 AATCGGTTCCCTCATGGGGGGG
1 -ATCGATTCCCTCATGGGGGGG
3310343 ATCGATTCCCTC
1 ATCGATTCCCTC
3310355 TGCACCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 20 0.69
22 7 0.24
23 2 0.07
ACGTcount: A:0.13, C:0.28, G:0.33, T:0.26
Consensus pattern (21 bp):
ATCGATTCCCTCATGGGGGGG
Found at i:3316867 original size:38 final size:38
Alignment explanation
Indices: 3316806--3317053 Score: 232
Period size: 38 Copynumber: 6.5 Consensus size: 38
3316796 ATTCCAATAC
* * *
3316806 AAAAATTAGGTTGGAA-CTGAAAATATAGTTTCTATGTG
1 AAAAATTAGGTTGCAACCT-AAAATTTAGTTTCTATATG
*
3316844 AAAAATTAGGTTGCAACCTAAAATTTAGTTTCCATATG
1 AAAAATTAGGTTGCAACCTAAAATTTAGTTTCTATATG
* * * ** *
3316882 -AAAATTCACGTAGCAATCTAAAA-TCCGAATTCTATATG
1 AAAAATT-AGGTTGCAACCTAAAATTTAG-TTTCTATATG
* *
3316920 AAAAATTAGGTTGCAACCTAAATTTTTGTTTCTATATG
1 AAAAATTAGGTTGCAACCTAAAATTTAGTTTCTATATG
* * * *
3316958 AAAAATCAGGTTGCAACCAAAAATCTGGTTTCTATATG
1 AAAAATTAGGTTGCAACCTAAAATTTAGTTTCTATATG
* * * * * *
3316996 AAAAAATCGATTACAGCCTAAAATTTGGTTTCTATATG
1 AAAAATTAGGTTGCAACCTAAAATTTAGTTTCTATATG
* *
3317034 AAAAATCAAGTTGCAACCTA
1 AAAAATTAGGTTGCAACCTA
3317054 TATAAACTGA
Statistics
Matches: 167, Mismatches: 38, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
37 8 0.05
38 149 0.89
39 10 0.06
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (38 bp):
AAAAATTAGGTTGCAACCTAAAATTTAGTTTCTATATG
Found at i:3317017 original size:114 final size:114
Alignment explanation
Indices: 3316806--3317053 Score: 268
Period size: 114 Copynumber: 2.2 Consensus size: 114
3316796 ATTCCAATAC
* * * * *
3316806 AAAAATTAGGTTGGAA-CTGAAAATATAGTTTCTATGTGAAAAATTAGGTTGCAACCTAAAATTT
1 AAAAATTAGGTTGCAACCT-AAAATATAGTTTCTATATGAAAAATCAGGTTGCAACCAAAAATCT
* *
3316870 AGTTTCCATATGAAAATTCACGTAGCAATCTAAAATCCGAATTCTATATG
65 AGTTTCCATATGAAAAATCACGTAGCAACCTAAAATCCGAATTCTATATG
* * * *
3316920 AAAAATTAGGTTGCAACCTAAATTTTTGTTTCTATATGAAAAATCAGGTTGCAACCAAAAATCTG
1 AAAAATTAGGTTGCAACCTAAAATATAGTTTCTATATGAAAAATCAGGTTGCAACCAAAAATCTA
* * * ** **
3316985 GTTTCTATATGAAAAAATCGA-TTA-CAGCCTAAAATTTGGTTTCTATATG
66 GTTTCCATATG-AAAAATC-ACGTAGCAACCTAAAATCCGAATTCTATATG
* *
3317034 AAAAATCAAGTTGCAACCTA
1 AAAAATTAGGTTGCAACCTA
3317054 TATAAACTGA
Statistics
Matches: 111, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
114 100 0.90
115 10 0.09
116 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (114 bp):
AAAAATTAGGTTGCAACCTAAAATATAGTTTCTATATGAAAAATCAGGTTGCAACCAAAAATCTA
GTTTCCATATGAAAAATCACGTAGCAACCTAAAATCCGAATTCTATATG
Found at i:3317904 original size:16 final size:16
Alignment explanation
Indices: 3317885--3317918 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
3317875 TTCAAATGAA
3317885 ATAACAAGTAAATATC
1 ATAACAAGTAAATATC
*
3317901 ATAACAAGTAAATTTC
1 ATAACAAGTAAATATC
3317917 AT
1 AT
3317919 GGAAAGTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.29
Consensus pattern (16 bp):
ATAACAAGTAAATATC
Found at i:3318006 original size:38 final size:38
Alignment explanation
Indices: 3317948--3318213 Score: 252
Period size: 38 Copynumber: 7.0 Consensus size: 38
3317938 TTGGAATTGG
* * * *
3317948 AAATCTAGTATCTATGTGAAAAATAAGGTTGCAACCTA
1 AAATCTGGTTTCTATATGAAAAATCAGGTTGCAACCTA
* * *
3317986 AAATATGGCTTTC-ATATGAAAAATCAAGTTGTAACCTA
1 AAATCTGG-TTTCTATATGAAAAATCAGGTTGCAACCTA
*
3318024 AAATCTGGTTTCTATATGGAAAATCAGGTTGCAACCTA
1 AAATCTGGTTTCTATATGAAAAATCAGGTTGCAACCTA
* * * *
3318062 AATTTTGGTTTCTATATGAAAAATCATGTTAC-ACCTAA
1 AAATCTGGTTTCTATATGAAAAATCAGGTTGCAACCT-A
* * * *
3318100 AAATCTAGTTTCCATATAAAAAATCAGGTTACAACCTA
1 AAATCTGGTTTCTATATGAAAAATCAGGTTGCAACCTA
* * * **
3318138 AAATCTGTTTTCTATACGAAAAAAT-ATGTTGCGGCCTA
1 AAATCTGGTTTCTATATG-AAAAATCAGGTTGCAACCTA
* * *
3318176 AAATCTTGTTTCTATAT-AGAAAATCAAGTTACAACCTA
1 AAATCTGGTTTCTATATGA-AAAATCAGGTTGCAACCTA
3318214 TAAACTTGTT
Statistics
Matches: 183, Mismatches: 38, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
36 1 0.01
37 13 0.07
38 156 0.85
39 13 0.07
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (38 bp):
AAATCTGGTTTCTATATGAAAAATCAGGTTGCAACCTA
Found at i:3327353 original size:58 final size:58
Alignment explanation
Indices: 3327290--3327503 Score: 313
Period size: 58 Copynumber: 3.7 Consensus size: 58
3327280 ATAACACTAA
* *
3327290 GTGTGCAAAAAGTTAAGAAATTCATTCTAAGTGTATGAATTTCCGTATTGGGCATTTT
1 GTGTGCAAAAAGTTAAGAAATTCATACTAAGTGTATGAATTTCCGTATTGGGCACTTT
* * *
3327348 GTGTGCAAAAAGTTAAGATATTCATACTAAGTGTATGAATTTCTGCATTGGGCACTTT
1 GTGTGCAAAAAGTTAAGAAATTCATACTAAGTGTATGAATTTCCGTATTGGGCACTTT
* * * *
3327406 GTGTTCAAAAAGTTAAGAAGTTCATACTAACTGTATGAATTTCCATATTGGGCACTTT
1 GTGTGCAAAAAGTTAAGAAATTCATACTAAGTGTATGAATTTCCGTATTGGGCACTTT
* *
3327464 GTGTGCAACAAA-TTAAGAAGTTCATATTAAGTGTATGAAT
1 GTGTGCAA-AAAGTTAAGAAATTCATACTAAGTGTATGAAT
3327504 ATCTGTATGA
Statistics
Matches: 140, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
58 137 0.98
59 3 0.02
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (58 bp):
GTGTGCAAAAAGTTAAGAAATTCATACTAAGTGTATGAATTTCCGTATTGGGCACTTT
Found at i:3327558 original size:55 final size:55
Alignment explanation
Indices: 3327471--3327586 Score: 148
Period size: 55 Copynumber: 2.1 Consensus size: 55
3327461 TTTGTGTGCA
* *
3327471 ACAAAT-TAAGAAGTTCATATTAAGTGTATGAATATCTGTATGAGAAATATATCT
1 ACAAATATAAGAAGTTCATAATAAGTGTATGAATATATGTATGAGAAATATATCT
* * *
3327525 ACAAATATAAGAAGTTCATAATAA-T-TAGGTGAATTTATGTATGGGAAATATATGT
1 ACAAATATAAGAAGTTCATAATAAGTGTA--TGAATATATGTATGAGAAATATATCT
3327580 ACAAATA
1 ACAAATA
3327587 AATATGTACA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
53 2 0.04
54 7 0.13
55 45 0.83
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.34
Consensus pattern (55 bp):
ACAAATATAAGAAGTTCATAATAAGTGTATGAATATATGTATGAGAAATATATCT
Found at i:3327593 original size:14 final size:14
Alignment explanation
Indices: 3327574--3327600 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
3327564 TATGGGAAAT
3327574 ATATGTACAAATAA
1 ATATGTACAAATAA
3327588 ATATGTACAAATA
1 ATATGTACAAATA
3327601 CAAAAAGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (14 bp):
ATATGTACAAATAA
Found at i:3327879 original size:68 final size:68
Alignment explanation
Indices: 3327795--3328389 Score: 798
Period size: 68 Copynumber: 8.8 Consensus size: 68
3327785 ACAAGATTAT
* * * *
3327795 GGCCTAACTGTGCATTTGATAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTTCTTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
3327860 TGA
66 TGA
* *
3327863 GGCCTAACTGTGCATTTGACAAAAAGGTGTCAATCATGCCTA-TTAGATGAAAGGATAAGTGCCT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCC-AGTTAGATGAAAGGCTAAGTGCCT
3327927 TTGA
65 TTGA
* * * * * *
3327931 GACCTAACTGTGCATTTAAAAAAAAGGTGTCAATCAGGCCAGTTAGATGAAAGACTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
*
3327996 TAA
66 TGA
* * * * *
3327999 GGCCTAATTGTGCATTTGACGGAAATGTGTCAATCATGCTAGTTAGATGAAAGGATAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
3328064 TGA
66 TGA
* * * * *
3328067 GGCCTAACTGTGCATTTGAAAAAAAGGTGTCAATCATGCTATTTAGATGAAAGGCTAAATGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
3328132 TGA
66 TGA
* * *
3328135 GACCTAACTGTACATTTGACAGAACA-GTGTCAACCATGCCAGTTAGATGAAAGGCTAAGTGCCT
1 GGCCTAACTGTGCATTTGACAGAA-AGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCT
3328199 TTGA
65 TTGA
* * * *
3328203 GGCCTAACTGCGCATTTGACATAAAGGTGGCAATCATGCCAGTTAGATGAAAGGATAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
3328268 TGA
66 TGA
* * *
3328271 GGCCTAACTATTCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTACCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
*
3328336 TTA
66 TGA
* * * * * *
3328339 GGCCTGACTGTGCGTTTGGCAGGAAGGTGTCAATGATGCCAGTTTGATGAA
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAA
3328390 CTATTAAATA
Statistics
Matches: 459, Mismatches: 64, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
67 2 0.00
68 455 0.99
69 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (68 bp):
GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
TGA
Found at i:3332132 original size:20 final size:20
Alignment explanation
Indices: 3332086--3332141 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
3332076 ATCGATTCAA
*
3332086 GTGGTATCGATACCAAGAAG
1 GTGGTATCGATACCATGAAG
3332106 G-GAGTATCGATACCATG-AG
1 GTG-GTATCGATACCATGAAG
*
3332125 GATGGTATTGATACCAT
1 G-TGGTATCGATACCAT
3332142 TGAACACAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 4 0.13
20 26 0.84
21 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (20 bp):
GTGGTATCGATACCATGAAG
Found at i:3332606 original size:58 final size:58
Alignment explanation
Indices: 3332544--3332759 Score: 360
Period size: 58 Copynumber: 3.7 Consensus size: 58
3332534 TTGGCACTAA
* *
3332544 GTGTGCAAAAAGTTAAGAAATTCATACTATGTGTATGAATTTCCATATTGAGCACTTT
1 GTGTGCAAAAAGTTAAGAAATTCATACTAAGTGTATGAATTTCCATATTGGGCACTTT
*
3332602 GTGTGCAAAAAGTTAAGAAATTCATACTAAGTGTATGAATTTCCGTATTGGGCACTTT
1 GTGTGCAAAAAGTTAAGAAATTCATACTAAGTGTATGAATTTCCATATTGGGCACTTT
* * * *
3332660 GTGTGAAAAAAATTAAGAAGTTTATACTAAGTGTATGAATTTCCATATTGGGCACTTT
1 GTGTGCAAAAAGTTAAGAAATTCATACTAAGTGTATGAATTTCCATATTGGGCACTTT
*
3332718 GTGTGCAAAAAGTTAATAAATTCATACTAAGTGTATGAATTT
1 GTGTGCAAAAAGTTAAGAAATTCATACTAAGTGTATGAATTT
3332760 TCGTATTTGA
Statistics
Matches: 145, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 145 1.00
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.36
Consensus pattern (58 bp):
GTGTGCAAAAAGTTAAGAAATTCATACTAAGTGTATGAATTTCCATATTGGGCACTTT
Found at i:3341913 original size:16 final size:15
Alignment explanation
Indices: 3341894--3341923 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
3341884 TGTTGGTGGG
3341894 AATGGAATGATGGTAT
1 AATGGAAT-ATGGTAT
3341910 AATGGAATATGGTA
1 AATGGAATATGGTA
3341924 GCAAATGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.00, G:0.30, T:0.30
Consensus pattern (15 bp):
AATGGAATATGGTAT
Found at i:3343022 original size:32 final size:32
Alignment explanation
Indices: 3342943--3343022 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 32
3342933 GCCCTCCAGG
*
3342943 GCAGTTGGGCGTGGTCTCCTCCTAGGCAGATT
1 GCAGTTGGGCGTGGTCCCCTCCTAGGCAGATT
* * *
3342975 GCAGTTAGGTGTGGTCCCCTCCTGGGCAGATT
1 GCAGTTGGGCGTGGTCCCCTCCTAGGCAGATT
* *
3343007 GCAGCTGGGCATGGTC
1 GCAGTTGGGCGTGGTC
3343023 AAAAAATGTC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.12, C:0.25, G:0.36, T:0.26
Consensus pattern (32 bp):
GCAGTTGGGCGTGGTCCCCTCCTAGGCAGATT
Found at i:3346424 original size:20 final size:19
Alignment explanation
Indices: 3346401--3346447 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
3346391 CGATATAACA
3346401 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
3346421 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
3346441 GGTAAAA
1 GGTAAAA
3346448 CGTTACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:3346429 original size:173 final size:177
Alignment explanation
Indices: 3346016--3346479 Score: 639
Period size: 173 Copynumber: 2.6 Consensus size: 177
3346006 GATCCAAATT
* * * * * **
3346016 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAATCGGTATTGAAATGATA
1 AAAAATATATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * * *
3346081 AAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTC
66 AAACCGGTAAAACGTTA-CGGATATATTGAAAGTGTCGATAC--T--TATAAGGATCGACACTTC
*
3346146 GTGAATTTAAAAGAGAAGCAGTTTTAAATACTATAAAGTGTCGATACTTTTA
126 GTGAATTTAAAAGAGAAGCAGTTTTAAAGACTATAAAGTGTCGATACTTTTA
* * * *
3346198 AAAAATATATCGAACCAAAACAATATACCATGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATATATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
*
3346263 AAACCGGTAAAACGTTA-GGATATATTGAAAGTGTCGATACTTATAAGGATCGACACTTTGTGAA
66 AAACCGGTAAAACGTTACGGATATATTGAAAGTGTCGATACTTATAAGGATCGACACTTCGTGAA
** * *
3346327 TTTAAAA-AGAAGCAGTTTTAGCGCCTATAATGTGTCGATAC-TTTA
131 TTTAAAAGAGAAGCAGTTTTAAAGACTATAAAGTGTCGATACTTTTA
*
3346372 AAAAA-ATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATATATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
3346436 AAACCGGTAAAACGTTACCGGATATATTGAAAGTGTCGATACTT
66 AAACCGGTAAAACGTTA-CGGATATATTGAAAGTGTCGATACTT
3346480 TCGTAAGTAC
Statistics
Matches: 253, Mismatches: 27, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
173 71 0.28
174 9 0.04
175 54 0.21
176 29 0.11
178 1 0.00
180 20 0.08
182 69 0.27
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.27
Consensus pattern (177 bp):
AAAAATATATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAACGTTACGGATATATTGAAAGTGTCGATACTTATAAGGATCGACACTTCGTGAA
TTTAAAAGAGAAGCAGTTTTAAAGACTATAAAGTGTCGATACTTTTA
Found at i:3348718 original size:21 final size:21
Alignment explanation
Indices: 3348671--3348732 Score: 81
Period size: 20 Copynumber: 3.0 Consensus size: 21
3348661 AAGACAATCA
*
3348671 AGAGTCGAAGAGAACTTGA-T
1 AGAGTCGAAGAGAACTTGAGG
3348691 AGAGTCGAAGAGAACTTGAGG
1 AGAGTCGAAGAGAACTTGAGG
* *
3348712 GGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGA-ACTTGAG
3348733 AGGCATAAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
20 19 0.51
21 11 0.30
22 7 0.19
ACGTcount: A:0.37, C:0.11, G:0.34, T:0.18
Consensus pattern (21 bp):
AGAGTCGAAGAGAACTTGAGG
Found at i:3350466 original size:19 final size:19
Alignment explanation
Indices: 3350442--3350490 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
3350432 AATGTAGGGT
3350442 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
3350461 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
3350480 TAATTTTGTAT
1 TAATTTTGTAT
3350491 GTGAATATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:3351142 original size:198 final size:200
Alignment explanation
Indices: 3350724--3351677 Score: 1640
Period size: 199 Copynumber: 4.8 Consensus size: 200
3350714 AATTTACAAT
* *
3350724 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAGAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * * * *
3350789 CGAAACCCAAAAGTATAATGTAATAGGTAATATTTCAATCTAATCGGTACAAGTATATCAGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
3350854 ATGAGAGAATATGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
3350919 AATGA
196 AATGA
*
3350924 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* **
3350989 CAAAACCCATAAGTATAATGTAATAGGTAA-TTTTCAATCTAACCGGTACAAAAATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
3351053 ATGAGAGAATA-GTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
3351117 AATGA
196 AATGA
*
3351122 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCC--ATATAAAAAGTGTCGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
3351185 CGAAACCCATAAG--TAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGATTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* *
3351248 ATGAGAGAATAGGTCTAAATAATGTTTCGACACTTTTTTAGTTTGTGTCGATA-TTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
3351312 AATGA
196 AATGA
3351317 ATGGCAAACAGGGTGCAACAA-AAA-TGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
3351380 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* *
3351445 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAT
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
3351510 AATGA
196 AATGA
*
3351515 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGAT-CCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
3351579 CTAAACCCATAAGTTTAATGTATTAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
3351644 ATGAGAGAATAGGTCTAAATAATGTATCGACACT
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACT
3351678 GTTTAATGTT
Statistics
Matches: 718, Mismatches: 27, Indels: 19
0.94 0.04 0.02
Matches are distributed among these distances:
193 9 0.01
194 18 0.03
195 119 0.17
196 79 0.11
197 100 0.14
198 128 0.18
199 147 0.20
200 118 0.16
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:3353172 original size:12 final size:12
Alignment explanation
Indices: 3353150--3353231 Score: 137
Period size: 12 Copynumber: 6.8 Consensus size: 12
3353140 CAAGCGGTCA
*
3353150 ATGAAGATGAAG
1 ATGACGATGAAG
*
3353162 CTGACGATGAAG
1 ATGACGATGAAG
3353174 ATGACGATGAAG
1 ATGACGATGAAG
3353186 ATGACGATGAAG
1 ATGACGATGAAG
3353198 ATGACGATGAAG
1 ATGACGATGAAG
3353210 ATGACGATGAAG
1 ATGACGATGAAG
*
3353222 ATGATGATGA
1 ATGACGATGA
3353232 TGATATTGAT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 66 1.00
ACGTcount: A:0.41, C:0.07, G:0.33, T:0.18
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:3353235 original size:6 final size:6
Alignment explanation
Indices: 3353150--3353231 Score: 101
Period size: 6 Copynumber: 13.7 Consensus size: 6
3353140 CAAGCGGTCA
* * * *
3353150 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGAAG ATGACG ATGAAG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* * *
3353198 ATGACG ATGAAG ATGACG ATGAAG ATGATG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGA
3353232 TGATATTGAT
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 63 1.00
ACGTcount: A:0.41, C:0.07, G:0.33, T:0.18
Consensus pattern (6 bp):
ATGAAG
Found at i:3354747 original size:119 final size:120
Alignment explanation
Indices: 3354535--3354776 Score: 389
Period size: 119 Copynumber: 2.0 Consensus size: 120
3354525 ACATCGGAAC
*
3354535 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCAGTATAAATATACCGGTTTTATGAGC
1 CCAGAATTATAATATAATAGATAATTTTGTAATATAACCAGTATAAATATACCGGTTTTATGAGC
* *
3354600 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTGTTAATATTGTGTCGGTACTTTATGT
* * *
3354655 CCAGAATTATAATATACTAGATAATTTTGTAATATAA-C-GTTATAAGTATACCGGTTTTATTAG
1 CCAGAATTATAATATAATAGATAATTTTGTAATATAACCAG-TATAAATATACCGGTTTTATGAG
* *
3354718 CGAATAGGTCTACAATCTATGTCGACACTTGTTAATATTGTGTCGGTACTTTATGT
65 CGAATAGGTCTACAACCTATATCGACACTTGTTAATATTGTGTCGGTACTTTATGT
3354774 CCA
1 CCA
3354777 TAATGGAAGA
Statistics
Matches: 113, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
118 1 0.01
119 77 0.68
120 35 0.31
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATATAATAGATAATTTTGTAATATAACCAGTATAAATATACCGGTTTTATGAGC
GAATAGGTCTACAACCTATATCGACACTTGTTAATATTGTGTCGGTACTTTATGT
Found at i:3355051 original size:120 final size:120
Alignment explanation
Indices: 3354838--3355083 Score: 393
Period size: 120 Copynumber: 2.0 Consensus size: 120
3354828 CATCGGAACT
* * **
3354838 CAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATATCGGTTTTATGAGCT
1 CAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGAG
* *
3354903 AATAGGTCTACAACATATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTC
66 AATAGGTCTACAACATATATCGACACTTTTTAATATTGTGTCGGTACTATATGTC
* * *
3354958 CAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGATTTTATTAGAG
1 CAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGAG
* *
3355023 AATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTATATGTC
66 AATAGGTCTACAACATATATCGACACTTTTTAATATTGTGTCGGTACTATATGTC
3355078 CAGAAT
1 CAGAAT
3355084 GGAAGAAAAA
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
120 115 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (120 bp):
CAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGAG
AATAGGTCTACAACATATATCGACACTTTTTAATATTGTGTCGGTACTATATGTC
Found at i:3355158 original size:303 final size:303
Alignment explanation
Indices: 3354469--3358277 Score: 7046
Period size: 303 Copynumber: 12.6 Consensus size: 303
3354459 TTTAATATTG
* *
3354469 TGTCCATAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTATACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
3354534 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCAGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
3354599 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
* *
3354664 TAATATACTAGATAATTTTGTAATATAA-CGTTATAAGTATACCGGTTTTATTAGCGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
* *
3354728 TACAATCTATGTCGACACTTGTTAATATTGTGTCGGTACTTTA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
* *
3354771 TGTCCATAATGGAAGAAAAATGTTTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
* *
3354836 CTCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATATCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
* *
3354901 CTAATAGGTCTACAACATATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
* *
3354966 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGATTTTATTAGAGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
*
3355031 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTATA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
*
3355074 TGTCCAGAATGGAAGAAAAATGTGTCGATACCGTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
3355139 CCCAGAATTATAATGTAATAGATAATTTTGAAATATAACCGGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
3355204 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
* *
3355269 TAATGTAATAGATAATTTTGTAATATAACCGGTATAAGAATACCGGTTTTATTAGCGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
*
3355334 TACAACCTATGTCGACACTTTTTAATATTGTGTCGATACTTTA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
*
3355377 TGTCCAGAATGGAAGAAAAATATGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
3355442 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
3355507 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
3355572 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
*
3355637 TACAACCTATGTCGGCACTTTTTAATATTGTGTCGGTACTTTA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
3355680 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
3355745 CCCAGAATTATAATGTAATAGATAATTCTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
3355810 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
*
3355875 TAATGTACTAGATAATTTTGTAATATAACCGTTATAAGTATACCGGTTTTATTAGCGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
* *
3355940 TACAATCTATGTCGACACTTGTTAATATTGTGTCGGTACTTTA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
*
3355983 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGAAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
3356048 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATATCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
3356113 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
**
3356178 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGAAAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
*
3356243 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTATA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
*
3356286 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTATACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
3356351 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
3356416 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
*
3356481 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCAGTTTTATTAGCGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
3356546 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
3356589 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
3356654 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
* *
3356719 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATCTCCAAAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
* *
3356784 TAATGTACTAGATAATTTTGTAACATAACCGGTATAAGTATACCGGTTTTATTAGAGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
* *
3356849 TACAACCTATGTCGACACTTTTTAATATTATGTCGGTACTATA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
* *
3356892 TTTCCAGAATGGAAGAAAAATGTGTCGATACCGTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
3356957 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
3357022 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
*
3357087 TAATGTAATAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
*
3357152 TACAACCTATGTCGACACTTTTTAATATTGTGTCGATACTTTA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
*
3357195 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTTGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
3357260 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAGCCGGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
3357325 CG-ATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
*
3357389 TAATGTAATAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
* *
3357454 TACAACCTATGTCGACAATTTTTAATATTGTGTCGGTATTTTA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
*
3357497 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGATATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
3357562 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
* *
3357627 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTGATGTCCAAAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
3357692 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
*
3357757 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTG
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
*
3357800 TGTCCAGAATGGAAGAAAAATGTGTCGATACCGTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
3357865 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
* *
3357930 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTGATGTCCAAAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
*
3357995 TCATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
*
3358060 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTG
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
*
3358103 TGTCCAGAATGGAAGAAAAATGTGTCGATACCGTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
3358168 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATATCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
*
3358233 CGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCG
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCG
3358278 CTAATTTTAA
Statistics
Matches: 3407, Mismatches: 98, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
302 511 0.15
303 2896 0.85
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (303 bp):
TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTC
TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
Found at i:3355353 original size:120 final size:120
Alignment explanation
Indices: 3355140--3355386 Score: 433
Period size: 120 Copynumber: 2.1 Consensus size: 120
3355130 ACATCGGAAC
3355140 CCAGAATTATAATGTAATAGATAATTTTGAAATATAACCGGTATAAATATACCGGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTGAAATATAACCGGTATAAATATACCGGTTTTATGAGC
* *
3355205 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGATACTTTATGT
* *
3355260 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAGA-ATACCGGTTTTATTAG
1 CCAGAATTATAATGTAATAGATAATTTTGAAATATAACCGGTATAA-ATATACCGGTTTTATGAG
*
3355324 CGAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGATACTTTATGT
65 CGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGATACTTTATGT
3355380 CCAGAAT
1 CCAGAAT
3355387 GGAAGAAAAA
Statistics
Matches: 121, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
120 120 0.99
121 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.37
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTTTGAAATATAACCGGTATAAATATACCGGTTTTATGAGC
GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGATACTTTATGT
Found at i:3355656 original size:120 final size:120
Alignment explanation
Indices: 3355443--3355689 Score: 440
Period size: 120 Copynumber: 2.1 Consensus size: 120
3355433 ACATCGGAAC
3355443 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
*
3355508 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
* * *
3355563 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
* *
3355628 GAATAGGTCTACAACCTATGTCGGCACTTTTTAATATTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
3355683 CCAGAAT
1 CCAGAAT
3355690 GGAAGAAAAA
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 121 1.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
Found at i:3355959 original size:120 final size:120
Alignment explanation
Indices: 3355746--3355992 Score: 413
Period size: 120 Copynumber: 2.1 Consensus size: 120
3355736 ACATCGGAAC
3355746 CCAGAATTATAATGTAATAGATAATTCTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTCTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
* *
3355811 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTGTTAATATTGTGTCGGTACTTTATGT
* * * * *
3355866 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGTTATAAGTATACCGGTTTTATTAGC
1 CCAGAATTATAATGTAATAGATAATTCTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
* *
3355931 GAATAGGTCTACAATCTATGTCGACACTTGTTAATATTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTGTTAATATTGTGTCGGTACTTTATGT
3355986 CCAGAAT
1 CCAGAAT
3355993 GGAAGAAAAA
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTCTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
GAATAGGTCTACAACCTATATCGACACTTGTTAATATTGTGTCGGTACTTTATGT
Found at i:3356262 original size:120 final size:120
Alignment explanation
Indices: 3356049--3356295 Score: 413
Period size: 120 Copynumber: 2.1 Consensus size: 120
3356039 ACATCGAAAC
* *
3356049 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATATCGGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGA
* * *
3356114 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 AAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTATATGT
* * *
3356169 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGA
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGA
*
3356234 AAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTATATGT
66 AAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTATATGT
3356289 CCAGAAT
1 CCAGAAT
3356296 GGAAGAAAAA
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGA
AAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTATATGT
Found at i:3356565 original size:120 final size:120
Alignment explanation
Indices: 3356352--3356598 Score: 440
Period size: 120 Copynumber: 2.1 Consensus size: 120
3356342 ACATCGGAAC
*
3356352 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGC
*
3356417 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
* * *
3356472 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCAGTTTTATTAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGC
*
3356537 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
3356592 CCAGAAT
1 CCAGAAT
3356599 GGAAGAAAAA
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 121 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGC
GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
Found at i:3356872 original size:120 final size:120
Alignment explanation
Indices: 3356659--3356897 Score: 388
Period size: 120 Copynumber: 2.0 Consensus size: 120
3356649 CGGAACCCAG
* *
3356659 AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAAT
1 AATTATAATGTAATAGATAATTTTGTAACATAACCGGTATAAATATACCGGTTTTATGAGAGAAT
* * *
3356724 AGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATCTCCAA
66 AGGTCTACAACCTATATCGACACTTTTTAATATTATGTCGGTACTATATCTCCAA
* * *
3356779 AATTATAATGTACTAGATAATTTTGTAACATAACCGGTATAAGTATACCGGTTTTATTAGAGAAT
1 AATTATAATGTAATAGATAATTTTGTAACATAACCGGTATAAATATACCGGTTTTATGAGAGAAT
* *
3356844 AGGTCTACAACCTATGTCGACACTTTTTAATATTATGTCGGTACTATATTTCCA
66 AGGTCTACAACCTATATCGACACTTTTTAATATTATGTCGGTACTATATCTCCA
3356898 GAATGGAAGA
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
120 109 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (120 bp):
AATTATAATGTAATAGATAATTTTGTAACATAACCGGTATAAATATACCGGTTTTATGAGAGAAT
AGGTCTACAACCTATATCGACACTTTTTAATATTATGTCGGTACTATATCTCCAA
Found at i:3357171 original size:120 final size:120
Alignment explanation
Indices: 3356958--3357204 Score: 440
Period size: 120 Copynumber: 2.1 Consensus size: 120
3356948 ACATCGGAAC
3356958 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGC
* *
3357023 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGATACTTTATGT
* * *
3357078 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGC
*
3357143 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGATACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGATACTTTATGT
3357198 CCAGAAT
1 CCAGAAT
3357205 GGAAGAAAAA
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 121 1.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGC
GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGATACTTTATGT
Found at i:3357780 original size:120 final size:120
Alignment explanation
Indices: 3357567--3357805 Score: 417
Period size: 120 Copynumber: 2.0 Consensus size: 120
3357557 CGGAACCCAG
3357567 AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAAT
1 AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAAT
*
3357632 AGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTAC-TTGATGTCCAA
66 AGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTG-TGTCCAA
* * *
3357687 AATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAAT
1 AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAAT
*
3357752 AGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTGTGTCCA
66 AGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTGTGTCCA
3357806 GAATGGAAGA
Statistics
Matches: 113, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
120 110 0.97
121 3 0.03
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (120 bp):
AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAAT
AGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTGTGTCCAA
Found at i:3358083 original size:120 final size:120
Alignment explanation
Indices: 3357870--3358108 Score: 408
Period size: 120 Copynumber: 2.0 Consensus size: 120
3357860 CGGAACCCAG
3357870 AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAAT
1 AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAAT
*
3357935 AGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTAC-TTGATGTCCAA
66 AGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTG-TGTCCAA
* * * *
3357990 AATTATCATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAAT
1 AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAAT
*
3358055 AGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTGTGTCCA
66 AGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTGTGTCCA
3358109 GAATGGAAGA
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
120 109 0.97
121 3 0.03
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.38
Consensus pattern (120 bp):
AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAAT
AGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTGTGTCCAA
Found at i:3361027 original size:23 final size:23
Alignment explanation
Indices: 3361001--3361073 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
3360991 ATAGGTAAAA
* *
3361001 ATATGATGTAATAAGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
3361024 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
3361047 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
3361070 ATAT
1 ATAT
3361074 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:3361522 original size:23 final size:23
Alignment explanation
Indices: 3361491--3361563 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
3361481 ATAGGTAAAA
*
3361491 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
3361514 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
**
3361537 ATATAATGTAATAGGTAATGCTT
1 ATATAATGTAATAGGTAGCGCTT
3361560 ATAT
1 ATAT
3361564 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:3362011 original size:23 final size:23
Alignment explanation
Indices: 3361980--3362052 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
3361970 ATAGGTAAAA
*
3361980 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
3362003 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
3362026 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
3362049 ATAT
1 ATAT
3362053 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:3362148 original size:489 final size:488
Alignment explanation
Indices: 3360816--3362454 Score: 2999
Period size: 489 Copynumber: 3.4 Consensus size: 488
3360806 GACCCAAATT
*
3360816 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTA
1 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
*
3360881 ATATTGTAGATGGAAAACATGAAACACTATTAAAAAATTGAAACATAAATTACATAACTTTAAAA
66 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATTGAAACATAAATTACATAACTTTAAAA
3360946 AAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
131 AAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
*
3361011 ATAAGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTG
196 ATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTG
*
3361076 TAAAGTATCTATCCTTTTTATAAAAGTGTTCATACTTTTTTCACTGTGGAAAACATTAATTTAAG
261 TAAAGTATCTATCCTTTTTATAAAAGTGTTCATACTTATTTCACTGTGGAAAACATTAATTTAAG
* *
3361141 GTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAATAATTATAGGCGTCTAATGATTTATTTTT
326 GTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATAGGCGTCTAATGATTTATTTTT
3361206 TACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATT
391 TACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATT
*
3361271 ATCTTTGGTTAATATTGTTAAATTTAAAATCTA
456 ATCTTTGGTTAATATTGTTAAATTTAAATTCTA
* *
3361304 AATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTA
1 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
3361369 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAA
66 ATATTGTAGGTGGAAAACATGAAACACTATT--AAAAAATTGAAACATAAATTACATAACTTTAA
*
3361434 AAAAAGTATCGATCTTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
129 AAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
*
3361499 TAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAATGCTTATAT
194 TAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATAT
*
3361564 TGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATTAATTTA
259 TGTAAAGTATCTATCCTTTTTATAAAAGTGTTCATACTTATTTCACTGTGGAAAACATTAATTTA
3361629 AGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATAGGCGTCTAATGATTTATTT
324 AGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATAGGCGTCTAATGATTTATTT
*
3361694 TTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTA
389 TTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTA
3361759 TTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
454 TTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
3361794 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
1 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
*
3361859 ATATTGTAGGTGGAAAACATGAAAAACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAA
66 ATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAATTGAAACATAAATTACATAACTTTAAA
* *
3361924 AAAAATATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGT
130 AAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGT
3361989 AATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATT
195 AATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATT
*
3362054 GTAAAGTATCTATCCTTTTTATAAAAGTGTTCATACTTATTTCACTGTGGAAAATATTAATTTAA
260 GTAAAGTATCTATCCTTTTTATAAAAGTGTTCATACTTATTTCACTGTGGAAAACATTAATTTAA
* * * **
3362119 AGTTATCTTTTGAGTGAATTTTAAGATATCAATTTAGTAATTATATGTATCTAATGATTTATTTT
325 GGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATAGGCGTCTAATGATTTATTTT
* *
3362184 TTATGTTACGGTATATATTATCATTAAATTAAAAACAATAAACATATATATTACATATTTATTAT
390 TTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTAT
3362249 TATCTTTGGTTAATATTGTTAAATTTAAATTCTA
455 TATCTTTGGTTAATATTGTTAAATTTAAATTCTA
3362283 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
1 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
* *
3362348 ATATTGTAGGTGAAAAATATGAAACACTATTAAAAAATTGAAACATAAATTACATAACTTTAAAA
66 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATTGAAACATAAATTACATAACTTTAAAA
*
3362413 AAAGTATCGATCCTTTTTATAAAAAAATATGGACACTTTCAA
131 AAAGTATCGATCCTTTTTAT-AAAAAGTATGGACACTTTCAA
3362455 CATATTATAA
Statistics
Matches: 1115, Mismatches: 33, Indels: 5
0.97 0.03 0.00
Matches are distributed among these distances:
488 146 0.13
489 493 0.44
490 476 0.43
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.40
Consensus pattern (488 bp):
AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATTGAAACATAAATTACATAACTTTAAAA
AAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
ATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTG
TAAAGTATCTATCCTTTTTATAAAAGTGTTCATACTTATTTCACTGTGGAAAACATTAATTTAAG
GTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATAGGCGTCTAATGATTTATTTTT
TACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATT
ATCTTTGGTTAATATTGTTAAATTTAAATTCTA
Found at i:3367393 original size:53 final size:53
Alignment explanation
Indices: 3367326--3367645 Score: 297
Period size: 53 Copynumber: 6.0 Consensus size: 53
3367316 CAGTTAAATT
* *
3367326 CCTAACTATGCATATTGGCATAAAGGTGTCAATAATGAAAGTTAGATGAAAGG
1 CCTAACTGTGCATATTGGCAGAAAGGTGTCAATAATGAAAGTTAGATGAAAGG
* * * *
3367379 CCTAACTGTACATATTGGCATAAAGGTGTTAATAATGAAAGTTAAATGAAAGG
1 CCTAACTGTGCATATTGGCAGAAAGGTGTCAATAATGAAAGTTAGATGAAAGG
* * *** * * * *
3367432 CATAACTATATTTTTTGACAGAAAGGTGTCAATAATGTAAGTTAGATGAAAGA
1 CCTAACTGTGCATATTGGCAGAAAGGTGTCAATAATGAAAGTTAGATGAAAGG
* * * *
3367485 CCTAACTGTGCA-ATTGGCAGAAATGTGCCAATAATGCAAGTTAGATGAAAGT
1 CCTAACTGTGCATATTGGCAGAAAGGTGTCAATAATGAAAGTTAGATGAAAGG
* * * *
3367537 CCTAACTGTGCA-ATTGGCAAAAAGGTG-CTAGTAATGCACGTTAGATGAAATGTTAAATG
1 CCTAACTGTGCATATTGGCAGAAAGGTGTC-AATAATGAAAGTTAGATGAAA-G------G
* * * *
3367596 CCTAACTATGCAT-TTGGCAGAAAGGTGCCAATAAAGCAAGTTAGATGAAA
1 CCTAACTGTGCATATTGGCAGAAAGGTGTCAATAATGAAAGTTAGATGAAA
3367646 AGTTAAATGC
Statistics
Matches: 221, Mismatches: 36, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
51 1 0.00
52 78 0.35
53 99 0.45
59 42 0.19
60 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (53 bp):
CCTAACTGTGCATATTGGCAGAAAGGTGTCAATAATGAAAGTTAGATGAAAGG
Found at i:3367526 original size:52 final size:52
Alignment explanation
Indices: 3367326--3367704 Score: 281
Period size: 53 Copynumber: 7.0 Consensus size: 52
3367316 CAGTTAAATT
* * * * *
3367326 CCTAACTATGCATATTGGCATAAAGGTGTCAATAATGAAAGTTAGATGAAAGG
1 CCTAACTGTGCA-ATTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAGA
* * ** * * *
3367379 CCTAACTGTACATATTGGCATAAAGGTGTTAATAATGAAAGTTAAATGAAAGG
1 CCTAACTGTGCA-ATTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAGA
* * **** * * *
3367432 CATAACTATATTTTTTGACAGAAAGGTGTCAATAATGTAAGTTAGATGAAAGA
1 CCTAACTGT-GCAATTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAGA
* *
3367485 CCTAACTGTGCAATTGGCAGAAATGTGCCAATAATGCAAGTTAGATGAAAGT
1 CCTAACTGTGCAATTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAGA
* * * *
3367537 CCTAACTGTGCAATTGGCAAAAAGGTGCTAGTAATGCACGTTAGATGAAATGTTAAA
1 CCTAACTGTGCAATTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAA-G----A
* * *
3367594 TGCCTAACTATGCATTTGGCAGAAAGGTGCCAATAAAGCAAGTTAGATGAAAAGTTAAA
1 --CCTAACTGTGCAATTGGCAGAAAGGTGCCAATAATGCAAGTTAGATG-AAAG----A
* * ** * *
3367653 TGCCTAACTGTGCATTTGGCTGAAATATGCGACTAATGCAAGTTAGATGAAA
1 --CCTAACTGTGCAATTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAA
3367705 AATAGTGTAT
Statistics
Matches: 270, Mismatches: 47, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
52 79 0.29
53 97 0.36
58 3 0.01
59 88 0.33
60 3 0.01
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (52 bp):
CCTAACTGTGCAATTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAGA
Found at i:3367548 original size:26 final size:26
Alignment explanation
Indices: 3367470--3367549 Score: 69
Period size: 26 Copynumber: 3.1 Consensus size: 26
3367460 TCAATAATGT
*
3367470 AAGTTAGATGAAAGACCTAACTGTGC
1 AAGTTAGATGAAAGTCCTAACTGTGC
* *
3367496 AA-TTGGCA-GAAATGTGCC-AA-TAATGC
1 AAGTTAG-ATGAAA-GT-CCTAACT-GTGC
3367522 AAGTTAGATGAAAGTCCTAACTGTGC
1 AAGTTAGATGAAAGTCCTAACTGTGC
3367548 AA
1 AA
3367550 TTGGCAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 16
0.66 0.08 0.26
Matches are distributed among these distances:
25 10 0.24
26 21 0.51
27 10 0.24
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.24
Consensus pattern (26 bp):
AAGTTAGATGAAAGTCCTAACTGTGC
Found at i:3367639 original size:59 final size:59
Alignment explanation
Indices: 3367537--3367705 Score: 221
Period size: 59 Copynumber: 2.9 Consensus size: 59
3367527 AGATGAAAGT
* * * * * *
3367537 CCTAACTGTGCAATTGGCAAAAAGGTGCTAGTAATGCACGTTAGATGAAATGTTAAATG
1 CCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAAGTTAAATG
* *
3367596 CCTAACTATGCATTTGGCAGAAAGGTGCCAATAAAGCAAGTTAGATGAAAAGTTAAATG
1 CCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAAGTTAAATG
* ** * *
3367655 CCTAACTGTGCATTTGGCTGAAATATGCGACTAATGCAAGTTAGATGAAAA
1 CCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAA
3367706 ATAGTGTATT
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
59 95 1.00
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.26
Consensus pattern (59 bp):
CCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAAGTTAAATG
Found at i:3377792 original size:55 final size:54
Alignment explanation
Indices: 3376415--3377779 Score: 1255
Period size: 55 Copynumber: 24.9 Consensus size: 54
3376405 CTCATTTTAT
* * *
3376415 GAAGA-TGATTCGAGTCCTATACTACCTGAAAGAAGAGGGAGCGGACCCGTTTAC
1 GAAGATTG-TTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTC
* * * * * * *
3376469 TGAAGTTTGTTCTAGTCATATACTCCCTGAAAGAAGAGGGAGCAGACTCGTTTACC
1 -GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTT-TC
*
3376525 GAAGATTGCTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGA--CATGTTTGCC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCAT-TTT--C
* * * ** *
3376580 GAAGATTGTCCGAGTCCTATACTCCCTAAAAGAATAGGGAGTAGACCTATTTTC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTC
* * * * **** *
3376634 AGAAGATTGTTCAAGTCCTATACTCCTTGAAAGAAGAATGAAG-GGATTTGTTTACC
1 -GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAG-AGGGAGCGGACCCATTT-TC
* *
3376690 GAAGATTCTTCGAGTCCTATACTCCCTGAAAGAAGAGAGG-GCGGACTCATTTTCC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAG-GGAGCGGACCCATTTT-C
* * * *
3376745 AAAGATTGTTCAAGTCCTATACTCCCTAAAAGAAGAGGGAGCGGA-CCATTTTTT
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCA-TTTTC
* * * * * **
3376799 GAAGTTTTTTCGAGTCCTATACTCCCTGAAAGAATAAGGAAC--ATACATGTTTACC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCAT-TTT--C
* * * *
3376854 GAAGATTGTTCGAATCCTATACTCTCTGAAAGAAGAGGGAGCAGACCTATTTTAC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTT-C
* * * * * *
3376909 GTAGATTTTTTGAGTCTTATACTCCATGAAAGAAGAGGGAGCAGACCCATTTTC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTC
* * * * **
3376963 TGAAGATTTTTCAAGTCCTATACTTCCTGAAAGAATAGGGAGCAAACCCATTTTTC
1 -GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCA-TTTTC
** *
3377019 GAAGAATT-TTTTAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCACTTTC
1 GAAG-ATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTC
* * * * * * *
3377073 TAAAGATTGTTCGAGTCCTATACTCCTTGAAAGAATAAGGAGCGGACACGTTTGCC
1 -GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTT-TC
* **
3377129 GAAGATTGTTCGAGTTCTATACTCCCTGAAAGAAGAGGGAGCAAACCCATTTTTC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCA-TTTTC
* * * * *
3377184 GAAGATTGTTCGAGTCTTATTCTCCCTGAAAAAAGAGGGAGCGAACCCATTTTTT
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCA-TTTTC
* * *
3377239 GAAGATTGTTCAAGTCGTATACTCCCTGAAAGAAGAGGGAGCGGACTCATTTTTC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCA-TTTTC
** * *
3377294 GAAGATTGTTCGAGTCCTATACTCTTTGAAAGAA-AGAGGAGCTGACACATTTTCC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAG-GGAGCGGACCCATTTT-C
* * * * * **
3377349 AAAGATTGTTCGAGCCCTATACTCTCTGAAAGAAAAGAGAGCGGACCTGTTTTC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTC
* * * * * * * *
3377403 TGAAGATTTTTCGAGTCATATACTGCCTAAAAGAATAGGGAACTGACCTATTTTTC
1 -GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCA-TTTTC
* * * *
3377459 GAAGATTGTTCGAGTCC--TACTCTCTAAAAAAAGAGGGAGCGGGCCCATTTTTC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCA-TTTTC
* *
3377512 GAAGATTTTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCTATTTTAC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTT-C
* * * * *
3377567 GAAGATTGTTCGAGTCCTATACTCCCTGAAGGAAGAGGGAACTGACTCGTTGTTC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATT-TTC
* *
3377622 GAAGATTTGTT-GAGTCCTATACTCCCTAAAATAAGAGGGAGCGGACCCATTTTTC
1 GAAGA-TTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCA-TTTTC
* * * * * * * *
3377677 GACGATTGTTCAAGTCTTATACTCCCTAAAAGAATAGGGATCAGACCTATTTTCC
1 GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTT-C
* *
3377732 GAAGA-TGTTTCAAGTCCTATACTCCCTGAAAGAAGAGGGAGCAGACCC
1 GAAGATTG-TTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCC
3377780 GTCCTTCGAA
Statistics
Matches: 1073, Mismatches: 195, Indels: 84
0.79 0.14 0.06
Matches are distributed among these distances:
52 2 0.00
53 51 0.05
54 73 0.07
55 900 0.84
56 42 0.04
57 5 0.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (54 bp):
GAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTC
Found at i:3378020 original size:2 final size:2
Alignment explanation
Indices: 3378013--3378126 Score: 122
Period size: 2 Copynumber: 61.5 Consensus size: 2
3378003 AGGCTTAGTG
3378013 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
**
3378055 AT AT A- AT -T AT -T A- AT AT AT AT AT AT GC A- AT -T A- ACT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
*
3378090 AT -T AA AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3378127 ATACTAAATC
Statistics
Matches: 96, Mismatches: 5, Indels: 22
0.78 0.04 0.18
Matches are distributed among these distances:
1 10 0.10
2 85 0.89
3 1 0.01
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (2 bp):
AT
Found at i:3386215 original size:3 final size:3
Alignment explanation
Indices: 3386201--3386248 Score: 87
Period size: 3 Copynumber: 15.7 Consensus size: 3
3386191 CTGCAAAATG
3386201 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3386247 TA
1 TA
3386249 TTTTTGTAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:3388253 original size:67 final size:67
Alignment explanation
Indices: 3388145--3388275 Score: 262
Period size: 67 Copynumber: 2.0 Consensus size: 67
3388135 ACATAAGGTG
3388145 ATAAAAGAAGGAACAGAGAAAAGGGTCATCAGTTAAAGAACACACACATATATAATTATATATAT
1 ATAAAAGAAGGAACAGAGAAAAGGGTCATCAGTTAAAGAACACACACATATATAATTATATATAT
3388210 AC
66 AC
3388212 ATAAAAGAAGGAACAGAGAAAAGGGTCATCAGTTAAAGAACACACACATATATAATTATATATA
1 ATAAAAGAAGGAACAGAGAAAAGGGTCATCAGTTAAAGAACACACACATATATAATTATATATA
3388276 ACAGTCCTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.53, C:0.11, G:0.15, T:0.21
Consensus pattern (67 bp):
ATAAAAGAAGGAACAGAGAAAAGGGTCATCAGTTAAAGAACACACACATATATAATTATATATAT
AC
Found at i:3395094 original size:2 final size:2
Alignment explanation
Indices: 3395087--3395117 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3395077 GATGTGATTA
3395087 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3395118 GTTTGGGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3395240 original size:61 final size:60
Alignment explanation
Indices: 3395119--3395242 Score: 144
Period size: 60 Copynumber: 2.0 Consensus size: 60
3395109 ATATATATAG
* ** * * *
3395119 TTTGGGATGAAATTGAAATATCTAAAAAGTTTGGGGTTCAATTTAGAATGAAAATAATAA
1 TTTGGGATGAAAATGAAATATCTAAAAAGTTTGGGACTCAATTTAAAATAAAAAAAATAA
*
3395179 TTTGAGGATGAAAATGAAATAT-TTAAAAGTTTGAGGACT-AATTTAAAATAAAAAAACATAA
1 TTTG-GGATGAAAATGAAATATCTAAAAAGTTTG-GGACTCAATTTAAAATAAAAAAA-ATAA
3395240 TTT
1 TTT
3395243 AAAGACGTGA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
60 28 0.52
61 26 0.48
ACGTcount: A:0.47, C:0.03, G:0.17, T:0.33
Consensus pattern (60 bp):
TTTGGGATGAAAATGAAATATCTAAAAAGTTTGGGACTCAATTTAAAATAAAAAAAATAA
Found at i:3397696 original size:2 final size:2
Alignment explanation
Indices: 3397679--3397730 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
3397669 TTCCCATGAC
* *
3397679 AT AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3397721 AT AT AT AT AT
1 AT AT AT AT AT
3397731 GCATTATTCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:3398668 original size:2 final size:2
Alignment explanation
Indices: 3398661--3398687 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
3398651 ATAATTATTA
3398661 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
3398688 ACAACACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3401189 original size:83 final size:83
Alignment explanation
Indices: 3401069--3401506 Score: 705
Period size: 83 Copynumber: 5.3 Consensus size: 83
3401059 CTTGGATTGA
* * * * * * **
3401069 TTCACTATTCTTTCATGAAGGTTCCATACTTTACTGAAAAATATGTTCCACTACTCTTTCGTGGA
1 TTCACTACTCTTCCGTGAAGATTTCATACTTTGCTGAAAAATCCGTTCCACTACTCTTTCGTGGA
3401134 GTTCAGATTTACTTCTGC
66 GTTCAGATTTACTTCTGC
* * * *
3401152 TTCACTACTCTTCTGTGAAGATTTCATATTTTGCTGAAAAATCCATTCAACTACTCTTTCGTGGA
1 TTCACTACTCTTCCGTGAAGATTTCATACTTTGCTGAAAAATCCGTTCCACTACTCTTTCGTGGA
3401217 GTTCAGATTTACTTCTGC
66 GTTCAGATTTACTTCTGC
* * **
3401235 TTCACTACTCTTCTGTGAAGATTTCATACTTTGTTGAAAAATATGTTCCACTACTCTTTCGTGGA
1 TTCACTACTCTTCCGTGAAGATTTCATACTTTGCTGAAAAATCCGTTCCACTACTCTTTCGTGGA
3401300 GTTCAGATTTACTTCTGC
66 GTTCAGATTTACTTCTGC
* *
3401318 TTCACTACTCTTCCATGAAGATTTCATACTTTGCTGAAAAATCCGTTACACTACTCTTTCGTGGA
1 TTCACTACTCTTCCGTGAAGATTTCATACTTTGCTGAAAAATCCGTTCCACTACTCTTTCGTGGA
3401383 GTTCAGATTTACTTCTGC
66 GTTCAGATTTACTTCTGC
*
3401401 TTCACTACTCTTCCGTGAAGATTTCATACTTTGCTAAAAAATCCGTTCCACTACTCTTTCGTGGA
1 TTCACTACTCTTCCGTGAAGATTTCATACTTTGCTGAAAAATCCGTTCCACTACTCTTTCGTGGA
3401466 GTTCAGATTTACTTCTGC
66 GTTCAGATTTACTTCTGC
3401484 TTCACTACTCTTCCGTGAAGATT
1 TTCACTACTCTTCCGTGAAGATT
3401507 GAATTTGATT
Statistics
Matches: 328, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 328 1.00
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.40
Consensus pattern (83 bp):
TTCACTACTCTTCCGTGAAGATTTCATACTTTGCTGAAAAATCCGTTCCACTACTCTTTCGTGGA
GTTCAGATTTACTTCTGC
Found at i:3401373 original size:46 final size:44
Alignment explanation
Indices: 3401318--3401463 Score: 128
Period size: 46 Copynumber: 3.4 Consensus size: 44
3401308 TTACTTCTGC
*
3401318 TTCACTACTCTTCCATGAAGATTTCATACTTTGCTGAAAAATCCG
1 TTCACTACTCTTCCGTGAAGATTTCATACTTTGCT-AAAAATCCG
* * * * *
3401363 TTACACTACTCTTTCGTG--GAGTTCAGA-TTTACT-----TCTG
1 TT-CACTACTCTTCCGTGAAGATTTCATACTTTGCTAAAAATCCG
3401400 CTTCACTACTCTTCCGTGAAGATTTCATACTTTGCTAAAAAATCCG
1 -TTCACTACTCTTCCGTGAAGATTTCATACTTTGCT-AAAAATCCG
*
3401446 TTCCACTACTCTTTCGTG
1 TT-CACTACTCTTCCGTG
3401464 GAGTTCAGAT
Statistics
Matches: 77, Mismatches: 12, Indels: 23
0.69 0.11 0.21
Matches are distributed among these distances:
37 17 0.22
38 2 0.03
39 7 0.09
40 5 0.06
43 5 0.06
44 7 0.09
45 4 0.05
46 30 0.39
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.38
Consensus pattern (44 bp):
TTCACTACTCTTCCGTGAAGATTTCATACTTTGCTAAAAATCCG
Found at i:3401625 original size:91 final size:90
Alignment explanation
Indices: 3401511--3401705 Score: 309
Period size: 91 Copynumber: 2.1 Consensus size: 90
3401501 AAGATTGAAT
* * * * *
3401511 TTGATTGACTTGACAAGAATCTAATTTCACTACTTTTCTGTGGATATCAGATTCAAAGTTGGATT
1 TTGATTGACTTGAAAAGAATCTAATTTCACTACTCTTCCGTGAAGATCAGATTCAAAGTTGGATT
*
3401576 TGCTTCCACTACTCTTCCGTGGAGC
66 TGCTTCCACTACTCTTCCATGGAGC
3401601 TTGATTTGACTTGAAAAGAATCTAATTTCACTACTCTTCCGTGAAGATCAGATTCAAAGTTGGAT
1 TTGA-TTGACTTGAAAAGAATCTAATTTCACTACTCTTCCGTGAAGATCAGATTCAAAGTTGGAT
3401666 TTGCTTCCACTACTCTTCCATGGAGC
65 TTGCTTCCACTACTCTTCCATGGAGC
*
3401692 TTGACTTGATTTGA
1 TTGA-TTGACTTGA
3401706 CTTGACAAGA
Statistics
Matches: 96, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
90 4 0.04
91 92 0.96
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.37
Consensus pattern (90 bp):
TTGATTGACTTGAAAAGAATCTAATTTCACTACTCTTCCGTGAAGATCAGATTCAAAGTTGGATT
TGCTTCCACTACTCTTCCATGGAGC
Found at i:3401772 original size:20 final size:20
Alignment explanation
Indices: 3401749--3401822 Score: 112
Period size: 20 Copynumber: 3.7 Consensus size: 20
3401739 AGATGACACA
3401749 AAGGATTTACAAATGACCCG
1 AAGGATTTACAAATGACCCG
* * *
3401769 AAGGCTTTACAAATTACCCA
1 AAGGATTTACAAATGACCCG
3401789 AAGGATTTACAAATGACCCG
1 AAGGATTTACAAATGACCCG
*
3401809 AAGGCTTTACAAAT
1 AAGGATTTACAAAT
3401823 TCCTGGAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (20 bp):
AAGGATTTACAAATGACCCG
Found at i:3401802 original size:40 final size:40
Alignment explanation
Indices: 3401747--3401823 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
3401737 ATAGATGACA
3401747 CAAAGGATTTACAAATGACCCGAAGGCTTTACAAATTACC
1 CAAAGGATTTACAAATGACCCGAAGGCTTTACAAATTACC
3401787 CAAAGGATTTACAAATGACCCGAAGGCTTTACAAATT
1 CAAAGGATTTACAAATGACCCGAAGGCTTTACAAATT
3401824 CCTGGAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (40 bp):
CAAAGGATTTACAAATGACCCGAAGGCTTTACAAATTACC
Found at i:3402603 original size:47 final size:47
Alignment explanation
Indices: 3402534--3402623 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 47
3402524 ACACATCACA
3402534 AAAAGGATTTATCATAATTCCTTTCATATTTCCACATCTAATCATAT
1 AAAAGGATTTATCATAATTCCTTTCATATTTCCACATCTAATCATAT
* * *
3402581 AAAAGGATTTATCCTAATTCCTTTCGTGTTTCCACATCTAATC
1 AAAAGGATTTATCATAATTCCTTTCATATTTCCACATCTAATC
3402624 TGATCTTGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (47 bp):
AAAAGGATTTATCATAATTCCTTTCATATTTCCACATCTAATCATAT
Found at i:3408132 original size:63 final size:63
Alignment explanation
Indices: 3407997--3408115 Score: 229
Period size: 63 Copynumber: 1.9 Consensus size: 63
3407987 ACATTCAATA
*
3407997 TGTACCGATGCACACTTAAATAATTAAACATCGAATGTAGATAGTGCATCGATGCACAAGGAG
1 TGTACCGATGCACACTTAAATAATTAAACATCGAATGCAGATAGTGCATCGATGCACAAGGAG
3408060 TGTACCGATGCACACTTAAATAATTAAACATCGAATGCAGATAGTGCATCGATGCA
1 TGTACCGATGCACACTTAAATAATTAAACATCGAATGCAGATAGTGCATCGATGCA
3408116 TAGGTTGTTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.24
Consensus pattern (63 bp):
TGTACCGATGCACACTTAAATAATTAAACATCGAATGCAGATAGTGCATCGATGCACAAGGAG
Found at i:3408498 original size:59 final size:59
Alignment explanation
Indices: 3408432--3408771 Score: 193
Period size: 59 Copynumber: 5.8 Consensus size: 59
3408422 CTATTGATGT
*
3408432 ATGTATAGTGATTACCGA-ATGGCATTTTGTGTGCTAAAATGATAAGGAAATCATATTGA
1 ATGTATAG-GATTTCCGATATGGCATTTTGTGTGCTAAAATGATAAGGAAATCATATTGA
* **
3408491 ATGTATA-GATTTCC-ATATGGAGCACTGAGTGTGCT-AAATGATAAGGAAATCATATTGA
1 ATGTATAGGATTTCCGATAT-G-GCATTTTGTGTGCTAAAATGATAAGGAAATCATATTGA
** * * * * * *
3408549 AAATAT-GGATTTCCAGATAGGGCATATTATGTGCTAAAATGGTAAGGGAATCATACT-A
1 ATGTATAGGATTTCC-GATATGGCATTTTGTGTGCTAAAATGATAAGGAAATCATATTGA
** * ** * * * *
3408607 AGTGTAT-GGATTTCCAGATAAAGCACTAAGGGTGCTACAAGGATAAGGAAATCATACT-A
1 A-TGTATAGGATTTCC-GATATGGCATTTTGTGTGCTAAAATGATAAGGAAATCATATTGA
* ** * ** *
3408666 ATGGTAT-GGATTTTCAC-ATAGGGCATTTCATGTGCTAAAATGGTAACAAAATCATACT-A
1 AT-GTATAGGA-TTTC-CGATATGGCATTTTGTGTGCTAAAATGATAAGGAAATCATATTGA
** * * *
3408725 ATGGTAT-GGATTTTTGAATAGGGCACTTCGTGTGCTAAAATGA-AAGG
1 AT-GTATAGGATTTCCG-ATATGGCATTTTGTGTGCTAAAATGATAAGG
3408772 GGAAGCATAC
Statistics
Matches: 220, Mismatches: 48, Indels: 27
0.75 0.16 0.09
Matches are distributed among these distances:
56 1 0.00
57 8 0.04
58 52 0.24
59 151 0.69
60 7 0.03
61 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (59 bp):
ATGTATAGGATTTCCGATATGGCATTTTGTGTGCTAAAATGATAAGGAAATCATATTGA
Found at i:3408543 original size:58 final size:59
Alignment explanation
Indices: 3408460--3408678 Score: 225
Period size: 59 Copynumber: 3.7 Consensus size: 59
3408450 ATGGCATTTT
* * *
3408460 GTGTGCTAAAATGATAAGGAAATCATATTGAATGTATAGATTTCCATATGGAGCACTGA
1 GTGTGCTAAAATGATAAGGAAATCATATTGAATGTATGGATTTCCAGATGGAGCACTAA
**
3408519 GTGTGCT-AAATGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGG-GCA-TATTA
1 GTGTGCTAAAATGATAAGGAAATCATATTGAATGTATGGATTTCCAGAT-GGAGCACTA--A
* * * **
3408578 -TGTGCTAAAATGGTAAGGGAATCATACT-AAGTGTATGGATTTCCAGATAAAGCACTAA
1 GTGTGCTAAAATGATAAGGAAATCATATTGAA-TGTATGGATTTCCAGATGGAGCACTAA
* * * *
3408636 GGGTGCTACAAGGATAAGGAAATCATACT-AATGGTATGGATTT
1 GTGTGCTAAAATGATAAGGAAATCATATTGAAT-GTATGGATTT
3408679 TCACATAGGG
Statistics
Matches: 134, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
57 1 0.01
58 50 0.37
59 81 0.60
60 2 0.01
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.29
Consensus pattern (59 bp):
GTGTGCTAAAATGATAAGGAAATCATATTGAATGTATGGATTTCCAGATGGAGCACTAA
Found at i:3408619 original size:117 final size:116
Alignment explanation
Indices: 3408452--3408737 Score: 333
Period size: 118 Copynumber: 2.4 Consensus size: 116
3408442 ATTACCGAAT
* * * * * **
3408452 GGCATTTTGTGTGCTAAAATGATAAGGAAATCATATTGAATGTATAGATTTCCATATGGAGCACT
1 GGCA-TTTATGTGCTAAAATGGTAAGGAAATCATACT-AATGTATGGATTTCCAGATAAAGCACT
* * * * *
3408517 GAGTGTGCTA-AATGATAAGGAAATCATATTGAA-AATATGGATTTCCAGATAG
64 AAGGGTGCTACAAGGATAAGGAAATCATACT-AATAATATGGATTTCCACATAG
*
3408569 GGCATATTATGTGCTAAAATGGTAAGGGAATCATACTAAGTGTATGGATTTCCAGATAAAGCACT
1 GGCAT-TTATGTGCTAAAATGGTAAGGAAATCATACTAA-TGTATGGATTTCCAGATAAAGCACT
** *
3408634 AAGGGTGCTACAAGGATAAGGAAATCATACTAATGGTATGGATTTTCACATAG
64 AAGGGTGCTACAAGGATAAGGAAATCATACTAATAATATGGATTTCCACATAG
**
3408687 GGCATTTCATGTGCTAAAATGGTAACAAAATCATACTAATGGTATGGATTT
1 GGCATTT-ATGTGCTAAAATGGTAAGGAAATCATACTAAT-GTATGGATTT
3408738 TTGAATAGGG
Statistics
Matches: 144, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
116 3 0.02
117 65 0.45
118 76 0.53
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.30
Consensus pattern (116 bp):
GGCATTTATGTGCTAAAATGGTAAGGAAATCATACTAATGTATGGATTTCCAGATAAAGCACTAA
GGGTGCTACAAGGATAAGGAAATCATACTAATAATATGGATTTCCACATAG
Found at i:3408954 original size:17 final size:18
Alignment explanation
Indices: 3408929--3408962 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
3408919 ATTATAGTAT
3408929 ATTCATTGGA-ATTAAAG
1 ATTCATTGGAGATTAAAG
*
3408946 ATTCCTTGGAGATTAAA
1 ATTCATTGGAGATTAAA
3408963 TATCATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (18 bp):
ATTCATTGGAGATTAAAG
Found at i:3409400 original size:12 final size:12
Alignment explanation
Indices: 3409383--3409414 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
3409373 GTATCGGTTC
3409383 ACTGTTCACGGT
1 ACTGTTCACGGT
3409395 ACTGTTCACGGT
1 ACTGTTCACGGT
*
3409407 ATTGTTCA
1 ACTGTTCA
3409415 TCATTGTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.38
Consensus pattern (12 bp):
ACTGTTCACGGT
Found at i:3410911 original size:13 final size:14
Alignment explanation
Indices: 3410889--3410927 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
3410879 TGTGATCAAA
3410889 GTCAACAGTCAATG
1 GTCAACAGTCAATG
3410903 GTCAA-AGTCAATG
1 GTCAACAGTCAATG
* *
3410916 ATCAAGAGTCAA
1 GTCAACAGTCAA
3410928 AGTTAACGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.21
Consensus pattern (14 bp):
GTCAACAGTCAATG
Found at i:3410920 original size:20 final size:20
Alignment explanation
Indices: 3410884--3410930 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
3410874 AGGGATGTGA
3410884 TCAAAGTCAACAGTCAATG-G
1 TCAAAGTCAACAGTCAA-GAG
*
3410904 TCAAAGTCAA-TGATCAAGAG
1 TCAAAGTCAACAG-TCAAGAG
3410924 TCAAAGT
1 TCAAAGT
3410931 TAACGAGTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (20 bp):
TCAAAGTCAACAGTCAAGAG
Found at i:3416769 original size:19 final size:19
Alignment explanation
Indices: 3416747--3416784 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
3416737 ATTGAAACTC
3416747 CGTTTTATAATGAACTGGA
1 CGTTTTATAATGAACTGGA
*
3416766 CGTTTTATAATGAATTGGA
1 CGTTTTATAATGAACTGGA
3416785 ATCCTGCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (19 bp):
CGTTTTATAATGAACTGGA
Found at i:3417250 original size:173 final size:173
Alignment explanation
Indices: 3416961--3417353 Score: 709
Period size: 173 Copynumber: 2.3 Consensus size: 173
3416951 GAGTTTAGCT
** ** *
3416961 TAATCTAGTATTTTTTGGTCGAACCCATTTTT--TCAGAAAAATGCTTTCGAGTTAGGTTTCTTA
1 TAATCTAGTA-TGATTGGTCGAACCCATTTTTGATTGGAAATATGC-TTCGAGTTAGGTTTCTTA
3417024 AGGTTTTGGTTGCTTTTTGATTGGAAATTAGTGTAGTTGATTTAAGTTAACCTCGATCGATAGTT
64 AGGTTTTGGTTGCTTTTTGATTGGAAATTAGTGTAGTTGATTTAAGTTAACCTCGATCGATAGTT
3417089 TCCTTATAGTTGTTGTTTTGCTTGGATTCATTCTGCCATTTTTCA
129 TCCTTATAGTTGTTGTTTTGCTTGGATTCATTCTGCCATTTTTCA
3417134 TAATCTAGTATGATTGGTCGAACCCATTTTTGATTGGAAATATGCTTCGAGTTAGGTTTCTTAAG
1 TAATCTAGTATGATTGGTCGAACCCATTTTTGATTGGAAATATGCTTCGAGTTAGGTTTCTTAAG
3417199 GTTTTGGTTGCTTTTTGATTGGAAATTAGTGTAGTTGATTTAAGTTAACCTCGATCGATAGTTTC
66 GTTTTGGTTGCTTTTTGATTGGAAATTAGTGTAGTTGATTTAAGTTAACCTCGATCGATAGTTTC
3417264 CTTATAGTTGTTGTTTTGCTTGGATTCATTCTGCCATTTTTCA
131 CTTATAGTTGTTGTTTTGCTTGGATTCATTCTGCCATTTTTCA
3417307 TAATCTAGTATGATTGGTCGAACCCATTTTTGATTGGAAATATGCTT
1 TAATCTAGTATGATTGGTCGAACCCATTTTTGATTGGAAATATGCTT
3417354 AGATAGCAGA
Statistics
Matches: 213, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
172 19 0.09
173 185 0.87
174 9 0.04
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.46
Consensus pattern (173 bp):
TAATCTAGTATGATTGGTCGAACCCATTTTTGATTGGAAATATGCTTCGAGTTAGGTTTCTTAAG
GTTTTGGTTGCTTTTTGATTGGAAATTAGTGTAGTTGATTTAAGTTAACCTCGATCGATAGTTTC
CTTATAGTTGTTGTTTTGCTTGGATTCATTCTGCCATTTTTCA
Found at i:3419165 original size:36 final size:36
Alignment explanation
Indices: 3419089--3419168 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
3419079 TGAATTAAAC
*
3419089 GGGGACGGGAAAAAATCGTTTATGCTAAACGGGAAA
1 GGGGACGGGAAAAAACCGTTTATGCTAAACGGGAAA
* * * * * *
3419125 GGGGATGGGGAAAAACCGTTTATGTTAAATGGGGAT
1 GGGGACGGGAAAAAACCGTTTATGCTAAACGGGAAA
3419161 GGGGACGG
1 GGGGACGG
3419169 AGATGAGTTT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.09, G:0.40, T:0.19
Consensus pattern (36 bp):
GGGGACGGGAAAAAACCGTTTATGCTAAACGGGAAA
Found at i:3419288 original size:33 final size:32
Alignment explanation
Indices: 3419246--3419317 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 32
3419236 ATTATTATAT
3419246 ATATATATAATATTAATAAATTTAAATTAAAAA
1 ATATATATAATATTAATAAATTT-AATTAAAAA
* * * *
3419279 ATATATATAATATTTATATATTTAATTTAAAT
1 ATATATATAATATTAATAAATTTAATTAAAAA
3419311 ATATATA
1 ATATATA
3419318 CCCGGCCCGA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
32 14 0.40
33 21 0.60
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (32 bp):
ATATATATAATATTAATAAATTTAATTAAAAA
Found at i:3419981 original size:28 final size:26
Alignment explanation
Indices: 3419937--3419992 Score: 67
Period size: 28 Copynumber: 2.1 Consensus size: 26
3419927 TATGCAGAAT
*
3419937 TAAATATAAATATAAAAGATAAATAAA
1 TAAATATAAATAGAAAAGAT-AATAAA
* *
3419964 TAAATTATATATAGAAAATATAATAAA
1 TAAA-TATAAATAGAAAAGATAATAAA
3419991 TA
1 TA
3419993 TTATATCTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (26 bp):
TAAATATAAATAGAAAAGATAATAAA
Found at i:3421324 original size:15 final size:16
Alignment explanation
Indices: 3421294--3421324 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
3421284 GTGGGAATAA
3421294 AAGATTACTAGAGAAT
1 AAGATTACTAGAGAAT
3421310 AAGATTACT-GAGAAT
1 AAGATTACTAGAGAAT
3421325 GTTTAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.26
Consensus pattern (16 bp):
AAGATTACTAGAGAAT
Found at i:3422504 original size:20 final size:20
Alignment explanation
Indices: 3422475--3422516 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
3422465 TTCATCACAC
*
3422475 CAAATCCTCTTA-ATTTCTCT
1 CAAATACTCTTATA-TTCTCT
3422495 CAAATACTCTTATATTCTCT
1 CAAATACTCTTATATTCTCT
3422515 CA
1 CA
3422517 TAACTCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (20 bp):
CAAATACTCTTATATTCTCT
Found at i:3422553 original size:17 final size:18
Alignment explanation
Indices: 3422531--3422564 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
3422521 TCTTTAAGGT
3422531 ATATTTTATTA-TATTTA
1 ATATTTTATTAGTATTTA
*
3422548 ATATTTTGTTAGTATTT
1 ATATTTTATTAGTATTT
3422565 TATTTAGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTTATTAGTATTTA
Found at i:3422596 original size:29 final size:29
Alignment explanation
Indices: 3422531--3422599 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
3422521 TCTTTAAGGT
3422531 ATATTTTA-TTATATTTAATATTTTGTTA
1 ATATTTTATTTATATTTAATATTTTGTTA
*
3422559 GTATTTTATTTAGTTATTTAA-ATTTT-TTA
1 ATATTTTATTTA--TATTTAATATTTTGTTA
3422588 ATATTTTATTTA
1 ATATTTTATTTA
3422600 ATAATTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
28 7 0.19
29 17 0.47
30 5 0.14
31 7 0.19
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (29 bp):
ATATTTTATTTATATTTAATATTTTGTTA
Found at i:3424663 original size:3 final size:3
Alignment explanation
Indices: 3424657--3424713 Score: 105
Period size: 3 Copynumber: 19.0 Consensus size: 3
3424647 CGACGATTAC
*
3424657 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GGT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
3424705 GAT GAT GAT
1 GAT GAT GAT
3424714 AGTGAGGAGT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:3424859 original size:14 final size:14
Alignment explanation
Indices: 3424840--3424873 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
3424830 TATTTACTTG
*
3424840 TTTATTGGATTTTT
1 TTTATTGGAATTTT
*
3424854 TTTATTGTAATTTT
1 TTTATTGGAATTTT
3424868 TTTATT
1 TTTATT
3424874 ATTTATCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.74
Consensus pattern (14 bp):
TTTATTGGAATTTT
Found at i:3424924 original size:13 final size:13
Alignment explanation
Indices: 3424906--3424930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3424896 TTGTTGGACT
3424906 TTTTGTTAATTTA
1 TTTTGTTAATTTA
3424919 TTTTGTTAATTT
1 TTTTGTTAATTT
3424931 TGTTTATTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (13 bp):
TTTTGTTAATTTA
Found at i:3429782 original size:27 final size:28
Alignment explanation
Indices: 3429737--3429790 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
3429727 AGGATTTTAT
**
3429737 ATTTTTATTTTCTCTTTTTTAGAAAATA
1 ATTTTTATTTTCTAATTTTTAGAAAATA
*
3429765 ATTTTTATTTT-TAATTTTTTGAAAAT
1 ATTTTTATTTTCTAATTTTTAGAAAAT
3429791 TAAAAAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (28 bp):
ATTTTTATTTTCTAATTTTTAGAAAATA
Found at i:3429782 original size:28 final size:27
Alignment explanation
Indices: 3429737--3429790 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
3429727 AGGATTTTAT
*
3429737 ATTTTTATTTTCTCTTTTTTAGAAAATA
1 ATTTTTATTTTCTATTTTTT-GAAAATA
3429765 ATTTTTATTTT-TAATTTTTTGAAAAT
1 ATTTTTATTTTCT-ATTTTTTGAAAAT
3429791 TAAAAAACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 7 0.29
28 17 0.71
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (27 bp):
ATTTTTATTTTCTATTTTTTGAAAATA
Found at i:3430746 original size:24 final size:24
Alignment explanation
Indices: 3430708--3430753 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
3430698 ATAGTAAAAA
*
3430708 TATTTTTTTTCTTCATGTTTTCACT
1 TATTTTTGTTCTTCAT-TTTTCACT
3430733 TATTTTTGTT-TTCATTTTTCA
1 TATTTTTGTTCTTCATTTTTCA
3430754 GAAATCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 5 0.25
25 9 0.45
ACGTcount: A:0.13, C:0.13, G:0.04, T:0.70
Consensus pattern (24 bp):
TATTTTTGTTCTTCATTTTTCACT
Found at i:3431714 original size:15 final size:15
Alignment explanation
Indices: 3431686--3431735 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
3431676 AATTTCAATC
3431686 AAATAATTTTTAAAT
1 AAATAATTTTTAAAT
3431701 AAAT-ATTTTATAAA-
1 AAATAATTTT-TAAAT
*
3431715 AATTAATTATTTAAAAT
1 AAATAATT-TTT-AAAT
3431732 AAAT
1 AAAT
3431736 TTCATGCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 8 0.29
15 12 0.43
16 5 0.18
17 3 0.11
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATAATTTTTAAAT
Found at i:3432413 original size:2 final size:2
Alignment explanation
Indices: 3432406--3432436 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3432396 ACTTGGTTAG
3432406 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3432437 CATTTTTCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3440332 original size:16 final size:16
Alignment explanation
Indices: 3440308--3440341 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
3440298 TATCGCCGTC
*
3440308 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
3440324 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
3440340 CG
1 CG
3440342 TGAATCGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:3464830 original size:20 final size:19
Alignment explanation
Indices: 3464805--3464856 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
3464795 TGATTTAATC
3464805 AGTATCAATACCGACGAGGG-
1 AGTATCAATACCGA--AGGGA
*
3464825 AGTATCGATACCGAAGGGA
1 AGTATCAATACCGAAGGGA
3464844 AGGTATCAATACC
1 A-GTATCAATACC
3464857 ATTCCAAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 4 0.14
19 1 0.04
20 23 0.82
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (19 bp):
AGTATCAATACCGAAGGGA
Found at i:3464903 original size:19 final size:19
Alignment explanation
Indices: 3464879--3464952 Score: 76
Period size: 19 Copynumber: 3.7 Consensus size: 19
3464869 AATGTAAAAT
*
3464879 GGTATCGATACCATAATAG
1 GGTATCGATACCATAGTAG
*
3464898 GGTATCAATACCATAGTATG
1 GGTATCGATACCATAGTA-G
* *
3464918 GTAGTATCGAAACCATGGTAAG
1 G--GTATCGATACCATAGT-AG
3464940 GGTATCGATACCA
1 GGTATCGATACCA
3464953 GGCAACATAA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
19 16 0.36
20 13 0.29
22 15 0.33
23 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (19 bp):
GGTATCGATACCATAGTAG
Found at i:3465586 original size:45 final size:45
Alignment explanation
Indices: 3465535--3465824 Score: 194
Period size: 45 Copynumber: 6.9 Consensus size: 45
3465525 ATAAAAGAAT
*
3465535 AATGCATATGGGTGCATCATTGGCATGAAAGGATGCCATATCTGA
1 AATGCATATGGGTGCATCATTGGCATGAAAGGATGCCATAGCTGA
* ** *
3465580 AATGCATATGGGTGCATTATTGGCATGAAATTATGTCATAGCTGA
1 AATGCATATGGGTGCATCATTGGCATGAAAGGATGCCATAGCTGA
* **
3465625 AATGCATATGGGTGCATTACCGGCAT-AAA--AT---A-A--T--
1 AATGCATATGGGTGCATCATTGGCATGAAAGGATGCCATAGCTGA
* * *
3465659 AATGCATATGAGTGCATTATTGGCATGAAAGGATGCCATAGTTGA
1 AATGCATATGGGTGCATCATTGGCATGAAAGGATGCCATAGCTGA
* * **
3465704 AATGTATATGGGTGCATTATCAGCAT-AAA--A-G--A-A--T--
1 AATGCATATGGGTGCATCATTGGCATGAAAGGATGCCATAGCTGA
* * * *
3465738 AATGCACATGGGTGCATCATTGGCATGAAAGGATTCCATAACTAAA
1 AATGCATATGGGTGCATCATTGGCATGAAAGGATGCCATAGCT-GA
* * *
3465784 AATGCATGAACGGATGCATTA-TGGCATGAAAGGATGCCATA
1 AATGCAT--ATGGGTGCATCATTGGCATGAAAGGATGCCATA
3465825 ATTAAAAATG
Statistics
Matches: 195, Mismatches: 25, Indels: 48
0.73 0.09 0.18
Matches are distributed among these distances:
34 44 0.23
35 6 0.03
36 2 0.01
37 3 0.02
38 2 0.01
39 2 0.01
40 2 0.01
41 3 0.02
42 3 0.02
43 2 0.01
44 6 0.03
45 86 0.44
46 6 0.03
47 19 0.10
48 9 0.05
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.27
Consensus pattern (45 bp):
AATGCATATGGGTGCATCATTGGCATGAAAGGATGCCATAGCTGA
Found at i:3465663 original size:79 final size:79
Alignment explanation
Indices: 3465580--3465777 Score: 288
Period size: 79 Copynumber: 2.5 Consensus size: 79
3465570 CCATATCTGA
** *
3465580 AATGCATATGGGTGCATTATTGGCATGAAATTATGTCATAGCTGAAATGCATATGGGTGCATTAC
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTGCATTAC
* *
3465645 CGGCATAAAATAAT
66 CAGCATAAAAGAAT
* * * *
3465659 AATGCATATGAGTGCATTATTGGCATGAAAGGATGCCATAGTTGAAATGTATATGGGTGCATTAT
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTGCATTAC
3465724 CAGCATAAAAGAAT
66 CAGCATAAAAGAAT
* * *
3465738 AATGCACATGGGTGCATCATTGGCATGAAAGGATTCCATA
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATA
3465778 ACTAAAAATG
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 106 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.29
Consensus pattern (79 bp):
AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTGCATTAC
CAGCATAAAAGAAT
Found at i:3465681 original size:124 final size:124
Alignment explanation
Indices: 3465456--3465723 Score: 412
Period size: 124 Copynumber: 2.2 Consensus size: 124
3465446 ATACAAGAAT
* * *
3465456 AATGCATATGGATGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTGGACTAT
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTGCACTAC
*
3465521 CGACATAAAAGAATAATGCATATGGGTGCATCATTGGCATGAAAGGATGCCATA-TCTGA
66 CGACATAAAAGAATAATGCATATGAGTGCATCATTGGCATGAAAGGATGCCATAGT-TGA
** * *
3465580 AATGCATATGGGTGCATTATTGGCATGAAATTATGTCATAGCTGAAATGCATATGGGTGCATTAC
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTGCACTAC
* * *
3465645 CGGCATAAAATAATAATGCATATGAGTGCATTATTGGCATGAAAGGATGCCATAGTTGA
66 CGACATAAAAGAATAATGCATATGAGTGCATCATTGGCATGAAAGGATGCCATAGTTGA
*
3465704 AATGTATATGGGTGCATTAT
1 AATGCATATGGGTGCATTAT
3465724 CAGCATAAAA
Statistics
Matches: 131, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
124 130 0.99
125 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (124 bp):
AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTGCACTAC
CGACATAAAAGAATAATGCATATGAGTGCATCATTGGCATGAAAGGATGCCATAGTTGA
Found at i:3465809 original size:47 final size:47
Alignment explanation
Indices: 3465758--3465880 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 47
3465748 GGTGCATCAT
* * *
3465758 TGGCATGAAAGGATTCCATAACTAAAAATGCATGAACGGATGCATTA
1 TGGCATGAAAGGATGCCATAATTAAAAATGCATGAAAGGATGCATTA
* *
3465805 TGGCATGAAAGGATGCCATAATTAAAAATGCATTAAAGGATGTATTA
1 TGGCATGAAAGGATGCCATAATTAAAAATGCATGAAAGGATGCATTA
* *
3465852 AGGCATGAAAGAATGCCATAATTAAAAAT
1 TGGCATGAAAGGATGCCATAATTAAAAAT
3465881 TTATGATTTA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.44, C:0.11, G:0.20, T:0.24
Consensus pattern (47 bp):
TGGCATGAAAGGATGCCATAATTAAAAATGCATGAAAGGATGCATTA
Found at i:3465837 original size:27 final size:27
Alignment explanation
Indices: 3465807--3465880 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 27
3465797 ATGCATTATG
3465807 GCATGAAAGGATGCCATAATTAAAAAT
1 GCATGAAAGGATGCCATAATTAAAAAT
* *
3465834 GCATTAAAGGATG---T-ATT---AAG
1 GCATGAAAGGATGCCATAATTAAAAAT
*
3465854 GCATGAAAGAATGCCATAATTAAAAAT
1 GCATGAAAGGATGCCATAATTAAAAAT
3465881 TTATGATTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 13 0.37
23 4 0.11
24 4 0.11
27 14 0.40
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.24
Consensus pattern (27 bp):
GCATGAAAGGATGCCATAATTAAAAAT
Found at i:3470868 original size:79 final size:79
Alignment explanation
Indices: 3470737--3471091 Score: 539
Period size: 79 Copynumber: 4.5 Consensus size: 79
3470727 GAATGAATAC
* * * * * * *
3470737 AAGAATAATGTAAATGGGTGCAATAATGGCATGAAAGGATGTCATAGCTGAAATACGTATGGGTG
1 AAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTG
*
3470802 CACTATCGGCATAA
66 CATTATCGGCATAA
* * * **
3470816 AAGAATAATGTATATGGGTGCATTATTGACATGAAAGGATGCCATGGCTGAAATGCATATCAGTG
1 AAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTG
3470881 CATTATCGGCATAA
66 CATTATCGGCATAA
* * *
3470895 AATAATAATGCATATGGGTGCATTATTGGCATGAAAGGAGGCCATAGCTGAAATGCATATAGGTG
1 AAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTG
* *
3470960 CATTATCCGCATTA
66 CATTATCGGCATAA
*
3470974 AAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGGGTG
1 AAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTG
3471039 CATTATCGGCATAA
66 CATTATCGGCATAA
3471053 AAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGA
1 AAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGA
3471092 CGACATAACT
Statistics
Matches: 250, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 250 1.00
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.27
Consensus pattern (79 bp):
AAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATGGGTG
CATTATCGGCATAA
Found at i:3470952 original size:45 final size:37
Alignment explanation
Indices: 3470946--3471091 Score: 124
Period size: 34 Copynumber: 3.9 Consensus size: 37
3470936 CCATAGCTGA
* ** *
3470946 AATGCATATAGGTGCATTATCCGCAT-TAA--AGAAT
1 AATGCATATGGGTGCATTATTGGCATGAAAGGAGAAT
3470980 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCT
1 AATGCATATGGGTGCATTATTGGCATGAAAGGA-G--A-A--T
* *
3471023 GAAATGTATATGGGTGCATTATCGGCAT-AAA--AGAAT
1 --AATGCATATGGGTGCATTATTGGCATGAAAGGAGAAT
3471059 AATGCATATGGGTGCATTATTGGCATGAAAGGA
1 AATGCATATGGGTGCATTATTGGCATGAAAGGA
3471092 CGACATAACT
Statistics
Matches: 90, Mismatches: 8, Indels: 25
0.73 0.07 0.20
Matches are distributed among these distances:
34 47 0.52
35 5 0.06
36 1 0.01
37 2 0.02
38 2 0.02
39 1 0.01
40 1 0.01
41 2 0.02
42 1 0.01
43 1 0.01
44 3 0.03
45 24 0.27
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (37 bp):
AATGCATATGGGTGCATTATTGGCATGAAAGGAGAAT
Found at i:3471187 original size:27 final size:27
Alignment explanation
Indices: 3471128--3471181 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
3471118 ATGTATTAAG
3471128 GCATGAAACGATGCCATGATTAAAAAT
1 GCATGAAACGATGCCATGATTAAAAAT
*
3471155 GCATGAAAGGATGCCAT-AGTTAAAAAT
1 GCATGAAACGATGCCATGA-TTAAAAAT
3471182 TTATGATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.22
Consensus pattern (27 bp):
GCATGAAACGATGCCATGATTAAAAAT
Found at i:3472874 original size:21 final size:21
Alignment explanation
Indices: 3472850--3472896 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
3472840 GGACAAAGGT
3472850 AAGAAAGTAAATAAAATTGAA
1 AAGAAAGTAAATAAAATTGAA
3472871 AAGAAAGTAAATAAAATTGAA
1 AAGAAAGTAAATAAAATTGAA
3472892 AAGAA
1 AAGAA
3472897 TGTCGAGATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.68, C:0.00, G:0.15, T:0.17
Consensus pattern (21 bp):
AAGAAAGTAAATAAAATTGAA
Found at i:3474540 original size:23 final size:21
Alignment explanation
Indices: 3474488--3474568 Score: 83
Period size: 21 Copynumber: 3.8 Consensus size: 21
3474478 CCAGAACCCC
* **
3474488 AGGGGGTATCGATTCCCCTGT
1 AGGGGGAATCGATTCCCCTCA
*
3474509 GGGGGGAATCGATTCCCCTTCAA
1 AGGGGGAATCGATTCCCC-TC-A
*
3474532 AGGGGGAATCGGTT-CCCTCA
1 AGGGGGAATCGATTCCCCTCA
*
3474552 AGGGGGGATCGATTCCC
1 AGGGGGAATCGATTCCC
3474569 TCTGCACCAA
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
20 13 0.27
21 20 0.41
22 4 0.08
23 12 0.24
ACGTcount: A:0.19, C:0.25, G:0.35, T:0.22
Consensus pattern (21 bp):
AGGGGGAATCGATTCCCCTCA
Found at i:3474556 original size:20 final size:21
Alignment explanation
Indices: 3474510--3474570 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
3474500 TTCCCCTGTG
3474510 GGGGGAATCGATTCCCCTTCAAA
1 GGGGGAATCGATT-CCC-TCAAA
*
3474533 GGGGGAATCGGTTCCCTC-AA
1 GGGGGAATCGATTCCCTCAAA
*
3474553 GGGGGGATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
3474571 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 18 0.51
21 2 0.06
22 3 0.09
23 12 0.34
ACGTcount: A:0.20, C:0.26, G:0.33, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGATTCCCTCAAA
Found at i:3480728 original size:37 final size:36
Alignment explanation
Indices: 3480678--3480796 Score: 166
Period size: 37 Copynumber: 3.2 Consensus size: 36
3480668 GTTTTCAACA
3480678 CTTAAGATTGATTTGCTTCACTACTCTTCGGTGAATG
1 CTTAAGATTGATTTGCTTCACTACTCTTCGGTGAA-G
* * *
3480715 CTTAAAATGGATTTGTTTCACTACTCTTCGGTGAAG
1 CTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAG
* *
3480751 ACTTAAGATTGATTTGGTTCACTACTCTTTGGTGAAGG
1 -CTTAAGATTGATTTGCTTCACTACTCTTCGGTGAA-G
3480789 CTTAAGAT
1 CTTAAGAT
3480797 GACCCGGATG
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
36 1 0.01
37 71 0.97
38 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.39
Consensus pattern (36 bp):
CTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAG
Found at i:3480996 original size:37 final size:37
Alignment explanation
Indices: 3480954--3481287 Score: 337
Period size: 37 Copynumber: 8.9 Consensus size: 37
3480944 ACTGATGGAT
*
3480954 TTGCTTCACTAATCTTCGGTGAAGGCTTAAGATTGAG
1 TTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAG
* * *
3480991 TTGCTTCACTAATCTTTGGTGAAGGCTTAAGATGGCCCAG
1 TTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTG---AG
** * * * * *** * * *
3481031 AGGACTT-AATCATTATGCTCAGAAGGCTTACTGATGGAT
1 TTG-CTTCACT-ACTCTTCGGTGAAGGCTTA-AGATTGAG
* * *
3481070 TTGTTTCACTAATCTTTGGTGAAGGCTTAAGATTGAG
1 TTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAG
** *
3481107 TTATTTCACTACTCTTCGGTGAAGACTTAAGATTGAG
1 TTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAG
* * *
3481144 TTGCTTCACTACTCTTCGGTGAAGGCTGAAGATGGAT
1 TTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAG
* * *
3481181 TTGCTTCACTACTTTTCGGTGAAGGCTTAAGATAGAC
1 TTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAG
* *
3481218 TTGCTTCATTACTCTTCGGTGAAGGCTTAAGATTGAT
1 TTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAG
3481255 TTGCTTCACTACTCTTCGGTGAAGGCTTAAGAT
1 TTGCTTCACTACTCTTCGGTGAAGGCTTAAGAT
3481288 GGCCCCGAGG
Statistics
Matches: 243, Mismatches: 47, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
37 200 0.82
38 14 0.06
39 4 0.02
40 5 0.02
41 15 0.06
42 5 0.02
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (37 bp):
TTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAG
Found at i:3481026 original size:116 final size:115
Alignment explanation
Indices: 3480721--3481250 Score: 537
Period size: 116 Copynumber: 4.7 Consensus size: 115
3480711 AATGCTTAAA
* * * * * *
3480721 ATGGATTTGTTTCACTACTCTTCGGTGAAGACTTAAGATTGATTTGGTTCACTACTCTTTGGTGA
1 ATGGATTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATTGAGTTGCTTCACTACTCTTCGGTGA
* * * *
3480786 AGGCTTAAGATGACCCGGATGACTTAATCATCATGCTCGGAAGGTTTACTG
66 AGGCTTAAGATGGCCC-GAAGACTTAATCATAATGCTCGGAAGGCTTACTG
* * * * **
3480837 ATGTATTTACTTCACT--T-AT--GTGAAGGCTTAAGATGGCTTTGCTTCACTACTCTTCGGT-A
1 ATGGATTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATTGAGTTGCTTCACTACTCTTCGGTGA
* *
3480896 GAGGCTTAAAATGGCCCGAAGAACTTAATCATAATGCTCGGATGGCTTACTG
66 -AGGCTTAAGATGGCCCGAAG-ACTTAATCATAATGCTCGGAAGGCTTACTG
* *
3480948 ATGGATTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATTGAGTTGCTTCACTAATCTTTGGTGA
1 ATGGATTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATTGAGTTGCTTCACTACTCTTCGGTGA
* * *
3481013 AGGCTTAAGATGGCCCAGAGGACTTAATCATTATGCTCAGAAGGCTTACTG
66 AGGCTTAAGATGGCCC-GAAGACTTAATCATAATGCTCGGAAGGCTTACTG
* * **
3481064 ATGGATTTGTTTCACTAATCTTTGGTGAAGGCTTAAGATTGAGTTATTTCACTACTCTTCGGTGA
1 ATGGATTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATTGAGTTGCTTCACTACTCTTCGGTGA
* * * ** * * * *
3481129 AGACTTAAGATTG--AGTTG-CTTCA-C-TACT-CTTCGGTGAAGGCTGA-AG
66 AGGCTTAAGATGGCCCGAAGACTTAATCATAATGC-TC-G-GAAGGCTTACTG
* * * * *
3481175 ATGGATTTGCTTCACTACTTTTCGGTGAAGGCTTAAGATAGACTTGCTTCATTACTCTTCGGTGA
1 ATGGATTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATTGAGTTGCTTCACTACTCTTCGGTGA
3481240 AGGCTTAAGAT
66 AGGCTTAAGAT
3481251 TGATTTGCTT
Statistics
Matches: 347, Mismatches: 55, Indels: 29
0.81 0.13 0.07
Matches are distributed among these distances:
109 1 0.00
110 8 0.02
111 157 0.45
112 12 0.03
113 4 0.01
114 2 0.01
116 159 0.46
117 4 0.01
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (115 bp):
ATGGATTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATTGAGTTGCTTCACTACTCTTCGGTGA
AGGCTTAAGATGGCCCGAAGACTTAATCATAATGCTCGGAAGGCTTACTG
Found at i:3481180 original size:227 final size:222
Alignment explanation
Indices: 3480677--3481250 Score: 634
Period size: 227 Copynumber: 2.5 Consensus size: 222
3480667 TGTTTTCAAC
* * * *
3480677 ACTTAAGATTGATTTGCTTCACTACTCTTCGGTGAATGCTTAAAATGGATTTGTTTCACTACTCT
1 ACTTAAGATTGAGTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCT
* * * * *
3480742 TCGGTGAAGACTTAAGATTGATTTGGTTCACTACTCTTTGGTGAAGGCTTAAGATGACCCGGATG
66 TCGGTGAAGGCTTAAGATTGACTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATGACCCAGAGG
* * *
3480807 ACTTAATCATCATGCTCGGAAGGTTTACTGATGTATTTACTTCACTTATGTGAAGGCTTAAGATG
131 ACTTAATCATCATGCTCAGAAGGCTTACTGATGGATTTACTTCACTTATGTGAAGGCTTAAGATG
** *
3480872 GCTTTGCTTCACTACTCTTCGGTAGAG
196 GAGTTACTTCACTACTCTTCGGTAGAG
* * * * ** * * * *
3480899 GCTTAAAATGGCCCGAAGAACTTAATCATAATGC-TC-G-GATGGCTTACTGATGGATTTGCTTC
1 ACTTAAGATTG--AGTTG--CTTCA-C-TACT-CTTCGGTGAAGGCTTA-AGATGGATTTGCTTC
* * * *
3480961 ACTAATCTTCGGTGAAGGCTTAAGATTGAGTTGCTTCACTAATCTTTGGTGAAGGCTTAAGATGG
58 ACTACTCTTCGGTGAAGGCTTAAGATTGACTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATGA
* ** *
3481026 CCCAGAGGACTTAATCATTATGCTCAGAAGGCTTACTGATGGATTTGTTTCACTAATCTTTGGTG
123 CCCAGAGGACTTAATCATCATGCTCAGAAGGCTTACTGATGGATTTACTTCAC---T-TAT-GTG
* *
3481091 AAGGCTTAAGATTGAGTTATTTCACTACTCTTCGGT-GAAG
183 AAGGCTTAAGATGGAGTTACTTCACTACTCTTCGGTAG-AG
* *
3481131 ACTTAAGATTGAGTTGCTTCACTACTCTTCGGTGAAGGCTGAAGATGGATTTGCTTCACTACTTT
1 ACTTAAGATTGAGTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCT
* * *
3481196 TCGGTGAAGGCTTAAGATAGACTTGCTTCATTACTCTTCGGTGAAGGCTTAAGAT
66 TCGGTGAAGGCTTAAGATTGACTTGCTTCACTACTCTTTGGTGAAGGCTTAAGAT
3481251 TGATTTGCTT
Statistics
Matches: 283, Mismatches: 52, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
222 8 0.03
224 1 0.00
225 1 0.00
226 16 0.06
227 190 0.67
228 16 0.06
229 1 0.00
230 3 0.01
231 3 0.01
232 44 0.16
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.35
Consensus pattern (222 bp):
ACTTAAGATTGAGTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCT
TCGGTGAAGGCTTAAGATTGACTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATGACCCAGAGG
ACTTAATCATCATGCTCAGAAGGCTTACTGATGGATTTACTTCACTTATGTGAAGGCTTAAGATG
GAGTTACTTCACTACTCTTCGGTAGAG
Found at i:3481199 original size:74 final size:74
Alignment explanation
Indices: 3480678--3481404 Score: 377
Period size: 74 Copynumber: 9.6 Consensus size: 74
3480668 GTTTTCAACA
* * * * *
3480678 CTTAAGATTGATTTGCTTCACTACTCTTCGGTGAATGCTTAAAATGGATTTGTTTCACTACTCTT
1 CTTAAGATTGAGTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTT
*
3480743 CGGTGAAGA
66 CGGTGAAGG
* * * * *** ** * * *
3480752 CTTAAGATTGATTTGGTTCACTACTCTTTGGTGAAGGCTTAAGAT-GACCCGGATGACTTAATCA
1 CTTAAGATTGAGTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATGGATTTGCTTCAC-TACTCT
*
3480816 TCATGCTCGGAAGG
65 TC--GGT--GAAGG
* * * * * *
3480830 TTTACTGA-TGTATTTACTTCACT--T-AT--GTGAAGGCTTAAGATGGCTTTGCTTCACTACTC
1 CTTA-AGATTG-AGTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTC
3480889 TTCGGT-AGAGG
64 TTCGGTGA-AGG
* * * ** * * *
3480900 CTTAAAATGGCCCGAAGAACTTAATCATAATGC-TC-G-GATGGCTTACTGATGGATTTGCTTCA
1 CTTAAGATTG--AGTTG--CTTCA-C-TAAT-CTTCGGTGAAGGCTTA-AGATGGATTTGCTTCA
*
3480962 CTAATCTTCGGTGAAGG
58 CTACTCTTCGGTGAAGG
* *** *
3480979 CTTAAGATTGAGTTGCTTCACTAATCTTTGGTGAAGGCTTAAGATGGCCCAGAGGACTT-AATCA
1 CTTAAGATTGAGTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATGG---ATTTG-CTTCACT-A
* * * ***
3481043 TTATGCTCAGAAGG
61 CTCTTCGGTGAAGG
* * * * * * * **
3481057 CTTACTGATGGATTTGTTTCACTAATCTTTGGTGAAGGCTTAAGATTGAGTTATTTCACTACTCT
1 CTTA-AGATTGAGTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCT
*
3481122 TCGGTGAAGA
65 TCGGTGAAGG
* * *
3481132 CTTAAGATTGAGTTGCTTCACTACTCTTCGGTGAAGGCTGAAGATGGATTTGCTTCACTACTTTT
1 CTTAAGATTGAGTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTT
3481197 CGGTGAAGG
66 CGGTGAAGG
* * * * *
3481206 CTTAAGATAGACTTGCTTCATTACTCTTCGGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTT
1 CTTAAGATTGAGTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTT
3481271 CGGTGAAGG
66 CGGTGAAGG
* * ** * * *
3481280 CTTAAGATGGCCCCGAGGACTT-AATCATCATGCTC-G-GAAGGCTTACTGATGGATTTGCTTCA
1 CTTAAGATTG---AGTTG-CTTCACTAATC-T--TCGGTGAAGGCTTA-AGATGGATTTGCTTCA
* * *
3481342 CTAGTCTTTGATGAAGG
58 CTACTCTTCGGTGAAGG
* * * * *
3481359 CTTAATATCGATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATG
1 CTTAAGATTGAGTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATG
3481405 AATTCACTTC
Statistics
Matches: 487, Mismatches: 123, Indels: 86
0.70 0.18 0.12
Matches are distributed among these distances:
69 2 0.00
70 7 0.01
72 3 0.01
73 16 0.03
74 215 0.44
75 45 0.09
76 12 0.02
77 13 0.03
78 47 0.10
79 124 0.25
80 3 0.01
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (74 bp):
CTTAAGATTGAGTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTT
CGGTGAAGG
Found at i:3481381 original size:37 final size:37
Alignment explanation
Indices: 3481316--3481404 Score: 124
Period size: 37 Copynumber: 2.4 Consensus size: 37
3481306 ATCATGCTCG
* * *
3481316 GAAGGCTTACTGATGGATTTGCTTCACTAGTCTTTGAT
1 GAAGGCTTA-AGATGGATTTGCTTCACTACTCTTTGGT
* *
3481354 GAAGGCTTAATATCGATTTGCTTCACTACTCTTTGGT
1 GAAGGCTTAAGATGGATTTGCTTCACTACTCTTTGGT
3481391 GAAGGCTTAAGATG
1 GAAGGCTTAAGATG
3481405 AATTCACTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
37 35 0.80
38 9 0.20
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.37
Consensus pattern (37 bp):
GAAGGCTTAAGATGGATTTGCTTCACTACTCTTTGGT
Found at i:3482765 original size:22 final size:22
Alignment explanation
Indices: 3482739--3482791 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
3482729 ATTTCAACAT
3482739 GATGTGGGTTCAGTCATGCCCA
1 GATGTGGGTTCAGTCATGCCCA
*
3482761 GATGTGGGTTCAGTCATGCCTA
1 GATGTGGGTTCAGTCATGCCCA
3482783 GATGTGGGT
1 GATGTGGGT
3482792 ATTCATGGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.17, C:0.17, G:0.36, T:0.30
Consensus pattern (22 bp):
GATGTGGGTTCAGTCATGCCCA
Found at i:3483978 original size:20 final size:21
Alignment explanation
Indices: 3483953--3483991 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
3483943 TCCTCTTTTT
3483953 TTTTCT-TATTTTCTATTTCA
1 TTTTCTATATTTTCTATTTCA
*
3483973 TTTTCTATTTTTTCTATTT
1 TTTTCTATATTTTCTATTT
3483992 TTCTATCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTCTATATTTTCTATTTCA
Found at i:3488146 original size:6 final size:6
Alignment explanation
Indices: 3488135--3488170 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
3488125 GCAACATAAG
* *
3488135 AATGCA AATGCA AATACA AATGCA AATGTA AATGCA
1 AATGCA AATGCA AATGCA AATGCA AATGCA AATGCA
3488171 CAAGGTGTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.19
Consensus pattern (6 bp):
AATGCA
Found at i:3488158 original size:18 final size:18
Alignment explanation
Indices: 3488122--3488167 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
3488112 TTAATAAGAT
3488122 AATGCAACATAAGAATGCA
1 AATGCAA-ATAAGAATGCA
3488141 AATGCAAATACA-AATGCA
1 AATGCAAATA-AGAATGCA
*
3488159 AATGTAAAT
1 AATGCAAAT
3488168 GCACAAGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.54, C:0.13, G:0.13, T:0.20
Consensus pattern (18 bp):
AATGCAAATAAGAATGCA
Found at i:3488596 original size:55 final size:55
Alignment explanation
Indices: 3488523--3488628 Score: 194
Period size: 55 Copynumber: 1.9 Consensus size: 55
3488513 CTTTGAAGGA
3488523 AGTCTTCAATCAACTTCAAATTTCTTCATTCATCGGATGTCTTTCTTCATGGATC
1 AGTCTTCAATCAACTTCAAATTTCTTCATTCATCGGATGTCTTTCTTCATGGATC
**
3488578 AGTCTTCAATCAGTTTCAAATTTCTTCATTCATCGGATGTCTTTCTTCATG
1 AGTCTTCAATCAACTTCAAATTTCTTCATTCATCGGATGTCTTTCTTCATG
3488629 AATTATTTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (55 bp):
AGTCTTCAATCAACTTCAAATTTCTTCATTCATCGGATGTCTTTCTTCATGGATC
Found at i:3492225 original size:3 final size:3
Alignment explanation
Indices: 3492219--3492266 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
3492209 ATTTTAGTTC
* *
3492219 ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA GTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
3492267 GCGATAATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:3492273 original size:15 final size:15
Alignment explanation
Indices: 3492224--3492275 Score: 77
Period size: 15 Copynumber: 3.5 Consensus size: 15
3492214 AGTTCATAAT
*
3492224 AATAATAATAATAAC
1 AATAATAATAATAGC
*
3492239 AATAATAATAATAGT
1 AATAATAATAATAGC
3492254 AATAATAATAATAGC
1 AATAATAATAATAGC
*
3492269 GATAATA
1 AATAATA
3492276 TTATCGGGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.29
Consensus pattern (15 bp):
AATAATAATAATAGC
Found at i:3492432 original size:14 final size:14
Alignment explanation
Indices: 3492396--3492422 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
3492386 ATTTATATTT
3492396 TCATCAAAATTTTA
1 TCATCAAAATTTTA
3492410 TCATCAAAATTTT
1 TCATCAAAATTTT
3492423 TTTATTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (14 bp):
TCATCAAAATTTTA
Found at i:3493911 original size:33 final size:35
Alignment explanation
Indices: 3493852--3493917 Score: 84
Period size: 33 Copynumber: 1.9 Consensus size: 35
3493842 AAAAAAAATC
* *
3493852 AAATGTTCACAAATTGGATTGGAGTATGAGGACTA
1 AAATGTTCACAAATTAGATTGGAGTATAAGGACTA
3493887 AAAT-TTCA-AAATTAGA-TGGAAGTATAAGGAC
1 AAATGTTCACAAATTAGATTGG-AGTATAAGGAC
3493918 CATGAATAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 3 0.11
33 17 0.61
34 4 0.14
35 4 0.14
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (35 bp):
AAATGTTCACAAATTAGATTGGAGTATAAGGACTA
Found at i:3498583 original size:94 final size:95
Alignment explanation
Indices: 3498476--3498664 Score: 247
Period size: 94 Copynumber: 2.0 Consensus size: 95
3498466 ATACCGAAGG
* * * *
3498476 GGTAGTGTCGATACCATGATAAGGGTATCGATACCAAGCAACATCGAATCA-AAAATCGGTATTG
1 GGTAGTATCGATACCATGATAAGAGTATCGATACCAAGCAACATCGAA-CATAAAATCAGTATCG
*
3498540 ATACCATAA-GGAGTATCGATACCATAGTAT
65 ATACCAGAAGGGAGTATCGATACCATAGTAT
* * * * *
3498570 GGTAGTATCGATACTATGGTAAGAGTGTCGATACTAGGCAACATCGAACATAAAATCAGTATCGA
1 GGTAGTATCGATACCATGATAAGAGTATCGATACCAAGCAACATCGAACATAAAATCAGTATCGA
* *
3498635 TACTAGAAGGGGGTATCGATACCATAGTAT
66 TACCAGAAGGGAGTATCGATACCATAGTAT
3498665 AGAAATATCG
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
93 2 0.02
94 59 0.73
95 20 0.25
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.25
Consensus pattern (95 bp):
GGTAGTATCGATACCATGATAAGAGTATCGATACCAAGCAACATCGAACATAAAATCAGTATCGA
TACCAGAAGGGAGTATCGATACCATAGTAT
Found at i:3498696 original size:95 final size:94
Alignment explanation
Indices: 3498495--3498700 Score: 245
Period size: 95 Copynumber: 2.2 Consensus size: 94
3498485 GATACCATGA
* * * * *
3498495 TAAGGGTATCGATACCAAGCAACATCGAATCAAAAATCGGTATTGATACCATAAGGAGTATCGAT
1 TAAGAGTATCGATACTAAGCAACATCGAATCAAAAATCAGTATCGATACCAGAAGGAGTATCGAT
* * * *
3498560 ACCATAGTATGGTAGTATCGATACTATGG
66 ACCATAGTATAGAAATATCGATACTAGGG
* * * *
3498589 TAAGAGTGTCGATACTAGGCAACATCGAA-CATAAAATCAGTATCGATACTAGAAGGGGGTATCG
1 TAAGAGTATCGATACTAAGCAACATCGAATCA-AAAATCAGTATCGATACCAGAA-GGAGTATCG
*
3498653 ATACCATAGTATAGAAATATCGGTACTAGGG
64 ATACCATAGTATAGAAATATCGATACTAGGG
3498684 T-AGTAGTATCGATACTA
1 TAAG-AGTATCGATACTA
3498701 TAGAGCCAGA
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
93 2 0.02
94 45 0.48
95 47 0.50
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.25
Consensus pattern (94 bp):
TAAGAGTATCGATACTAAGCAACATCGAATCAAAAATCAGTATCGATACCAGAAGGAGTATCGAT
ACCATAGTATAGAAATATCGATACTAGGG
Found at i:3499118 original size:56 final size:54
Alignment explanation
Indices: 3499030--3499189 Score: 209
Period size: 56 Copynumber: 2.9 Consensus size: 54
3499020 ATGACACTAA
* *
3499030 GTGTGCAAAAATTGTAAGATATTCATACTAAGTGTATGAATTTCTGTATGGGCAGTTT
1 GTGTGCAAAAA-T-TAAGAAATTCATACTAAGTGTATGAATTTCTGTATGGGCA--AT
*
3499088 GTGTGCAAAAATAAAGAAATTCATACTAAGTGTATGAATTTCTGTATGGGCAAT
1 GTGTGCAAAAATTAAGAAATTCATACTAAGTGTATGAATTTCTGTATGGGCAAT
* *
3499142 GTGTGC--GAATTAAGAAATTCATACCAAGTGTATGAATGTT-TGTATGGG
1 GTGTGCAAAAATTAAGAAATTCATACTAAGTGTATGAAT-TTCTGTATGGG
3499190 AAAATATATG
Statistics
Matches: 95, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
52 36 0.38
53 2 0.02
54 7 0.07
56 38 0.40
57 1 0.01
58 11 0.12
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (54 bp):
GTGTGCAAAAATTAAGAAATTCATACTAAGTGTATGAATTTCTGTATGGGCAAT
Found at i:3499518 original size:20 final size:20
Alignment explanation
Indices: 3499495--3499537 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
3499485 TATGACAGAA
3499495 AGATGTCATTTATGCCAGTT
1 AGATGTCATTTATGCCAGTT
3499515 AGATGTCATTTATGCCAGTT
1 AGATGTCATTTATGCCAGTT
3499535 AGA
1 AGA
3499538 CGAAAGGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (20 bp):
AGATGTCATTTATGCCAGTT
Done.