Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002890.1 Hibiscus syriacus cultivar Beakdansim tig00005974_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5046466
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 15 of 21
Found at i:3499579 original size:88 final size:88
Alignment explanation
Indices: 3499430--3499607 Score: 302
Period size: 88 Copynumber: 2.0 Consensus size: 88
3499420 GACATAAATG
* * *
3499430 TGTCATTTATGCCAGTTAGATGAAAAGCTAAGTGCCTTTGAGTCTTAACTGTGCATATGACAGAA
1 TGTCATTTATGCCAGTTAGACGAAAAGCTAAGTGCCTTTGAGGCCTAACTGTGCATATGACAGAA
3499495 AGATGTCATTTATGCCAGTTAGA
66 AGATGTCATTTATGCCAGTTAGA
*
3499518 TGTCATTTATGCCAGTTAGACGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATATGACAGAA
1 TGTCATTTATGCCAGTTAGACGAAAAGCTAAGTGCCTTTGAGGCCTAACTGTGCATATGACAGAA
* *
3499583 AGGTGTCATTTATGTCAGTTAGA
66 AGATGTCATTTATGCCAGTTAGA
3499606 TG
1 TG
3499608 AAAGGCTAAG
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (88 bp):
TGTCATTTATGCCAGTTAGACGAAAAGCTAAGTGCCTTTGAGGCCTAACTGTGCATATGACAGAA
AGATGTCATTTATGCCAGTTAGA
Found at i:3499899 original size:68 final size:68
Alignment explanation
Indices: 3499518--3499881 Score: 516
Period size: 68 Copynumber: 5.4 Consensus size: 68
3499508 GCCAGTTAGA
*
3499518 TGTCATTTATGCCAGTTAGACGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATATGACAGAA
1 TGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATATGACAGAA
3499583 AGG
66 AGG
* * *
3499586 TGTCATTTATGTCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATATAACAAAA
1 TGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATATGACAGAA
*
3499651 AGA
66 AGG
*
3499654 TGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATATGACAAAA
1 TGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATATGACAGAA
3499719 AGG
66 AGG
* * * **
3499722 TGTCATTTATGTCAGTTAGATGAAAGGCTAAGCGCCTTTGAGGCCTAACTATGCA-ATTGGTAGA
1 TGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATA-TGACAGA
3499786 AAGG
65 AAGG
* * * * * **
3499790 TGTCATTTATGCTAGTTATATGAAAGGTTAAGTACCTTTGAGGCCTAACTGTGTA-ATTGGTAGA
1 TGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATA-TGACAGA
3499854 AAGG
65 AAGG
* *
3499858 TGCCAATTATGCCAGTTAGATGAA
1 TGTCATTTATGCCAGTTAGATGAA
3499882 TGGTTAAATA
Statistics
Matches: 269, Mismatches: 26, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
67 1 0.00
68 268 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (68 bp):
TGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATATGACAGAA
AGG
Found at i:3501405 original size:30 final size:29
Alignment explanation
Indices: 3501371--3501436 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 29
3501361 TAAAATTTGT
*
3501371 AAAGTTAAGGGGCTAAAGTATAATTTTAGA
1 AAAGTTAAGGGACTAAAGTATAATTTTA-A
* *
3501401 AAAGTTTAGGGACTAAAGTGTAATTTTAA
1 AAAGTTAAGGGACTAAAGTATAATTTTAA
3501430 AAAGTTA
1 AAAGTTA
3501437 TGTAATCCGA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (29 bp):
AAAGTTAAGGGACTAAAGTATAATTTTAA
Found at i:3503530 original size:25 final size:26
Alignment explanation
Indices: 3503502--3503563 Score: 103
Period size: 25 Copynumber: 2.5 Consensus size: 26
3503492 ATACCATATT
3503502 CGGTATCGATACTACTATACATAG-A
1 CGGTATCGATACTACTATACATAGTA
3503527 CGGTATCGATACTACTATACATAGTA
1 CGGTATCGATACTACTATACATAGTA
3503553 --GTATCGATACT
1 CGGTATCGATACT
3503564 CCTTGAACGA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
24 11 0.31
25 24 0.67
26 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (26 bp):
CGGTATCGATACTACTATACATAGTA
Found at i:3509351 original size:22 final size:22
Alignment explanation
Indices: 3509302--3509380 Score: 85
Period size: 22 Copynumber: 3.7 Consensus size: 22
3509292 TTGTGCACTT
*
3509302 GGTATCGATAATACTC--ACATA
1 GGTATCGATACTACTCTTAC-TA
*
3509323 -GTATCGATATTACTCTTACTA
1 GGTATCGATACTACTCTTACTA
3509344 GGTATCGATACTACTCTTGA-TA
1 GGTATCGATACTACTCTT-ACTA
*
3509366 GGTATCAATACTACT
1 GGTATCGATACTACT
3509381 AGCCTAGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.27
21 2 0.04
22 34 0.67
23 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (22 bp):
GGTATCGATACTACTCTTACTA
Found at i:3509921 original size:2 final size:2
Alignment explanation
Indices: 3509914--3509960 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
3509904 TTGTTTTGAT
3509914 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3509956 TA TA T
1 TA TA T
3509961 TGTTTTCATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3511680 original size:4 final size:4
Alignment explanation
Indices: 3511681--3526561 Score: 18897
Period size: 4 Copynumber: 3744.8 Consensus size: 4
3511671 TGTCTGTCTG
* * *
3511681 TCTA TCTA ACTA TCTA TATA TCTA TCTA TCTA TCTA TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
3511729 TCTA CCTG TTTG TCTG TCTA TCTG TCTG TCTG TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3511777 TCTG TCTA TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3511825 TCTA TCTG TCTA TCTA TCTG TCTG TCTA TCTG TCTG TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3511873 TCTG TCTG TCTA TCTA TCTG TCTG TATA TCTA TCTG TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3511921 TCTG TCTA TCTA TCTG TCTA TCTC TCTA TCTA TCTG TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3511969 TCTA TCTG TCTA TCTA TATG TCTA TCTG TCTA TCTA TCTG TATA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3512017 TCTA TCTG TCTG TCTA TCTG TCTA TCTA TCTG TCTA TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3512065 TTTG TCTA TCTG TCTA TCTG TCTA CCTA TCTG TCTA TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3512113 TATG TCTA TCTA TATG TCTA TCTG TCTA TCTG TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
3512161 TCTG TCTG TCTA TCTG CCTA TTTG TCTG TCTA TCTG CCTA TTTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3512209 TCTG TCTA TCTA TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3512257 TCTG TCTA TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
3512305 TCTG TCTG TCTC TCTG TCTA TCTG TCTG TCTG TCTG TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
3512353 TCTG TCTG CCTA TCTG CCTA TCTG TCTG TCTA TCTG TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * ** * *
3512401 TCTA TCTG TCTG TCTA TCTG TCTA TCTG TCCG TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3512449 TCTA TCTG TCTG TCTA TCTA TCTA TCTA TCTG TCTG TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3512497 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3512545 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3512593 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA --TA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3512639 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3512687 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3512735 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3512783 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * * *
3512831 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTC
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3512879 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3512927 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3512975 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513023 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513071 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513119 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TC-A TCTA TC-- TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513164 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513212 TCTA TCTA TCTA TCTA TCTA TCTAA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCT-A TCTA TCTA TCTA TCTA TCTA TCTA
3513261 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513309 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513357 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513405 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513453 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513501 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513549 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3513597 TATA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513645 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513693 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513741 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3513789 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3513837 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3513885 CCTA TCTA TCTG TCTG TCTA TCTG TCTG TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3513933 TCTA TCTA TCTG TCTG TCTA TCTG TCTG TCTA TCTG TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3513981 TCTA TCTG TCTG TCTA TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3514029 TCTG TCTA TCTG TCTA TCTG TCTG TCTA TC-- TCTA TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514075 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3514123 TCTA TCTG TCTG TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3514171 TCTG TCTG TCTG TCTG TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3514219 TCTG TCTG TCTG TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
3514267 TCTG TCTA TCTC TCTA TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514315 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514363 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514411 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514459 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514507 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514555 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514603 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514651 TC-- TCTA TCTA TC-- TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514695 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514743 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514791 TCTA TCTA CTCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA -TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3514840 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
3514888 TCTA TCTA TCTA TCTA TCTG TCTG TCTG TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3514936 TCTA TCTG TCTG TCTA TCTG TCTG TCTA TCTG TCTA TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
3514984 TCTG TCTA TCTA TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515032 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515080 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
3515128 TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTG TCTG TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3515176 TCTA TCTA TCTA TCTA TCTG TCTG TCTG TCTG TCTA TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3515224 TCTA TCTA TCTG TCTG TCTG TCTG TCTG TCTA TCTC TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515272 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515320 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515368 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515416 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3515464 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCGA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515512 TCTA TCTA TCTA --TA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515558 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515606 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515654 TCTA TCTA TCTA TCTA TCTA TC-- TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515700 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515748 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515796 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515844 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3515892 TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTG TCTA TCTG TCTGA -CACA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCT-A TC-TA
*
3515941 TCTA TCTA TCTC TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3515989 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
3516037 TCTA TCTG TCTG TCTA TCTA TCTA TCTA TCTA TCTG TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3516085 TCTG TCTA TCTG TCTG TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3516133 TCTA TCTG TCTG TCTA TCTA TCTG TCTG TCTA TCTG TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
3516181 TCTA TCTA TCTA TCTA TCTG TC-- TCTA TCTA TCTG TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3516227 TCTG TCTA TCTG TCTG TCTA TCTA TCTA TCTG TCTA TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
3516275 TCTG TCTA TCTA TCTG TCTA TCTG TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3516323 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TC-- TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3516369 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3516417 TCTA TCTA TC-- TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3516463 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3516511 TC-- TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3516557 TCTA TCTC TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3516605 TCTA TCTA TCTA TCTA TCTA TCTA T-AA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3516652 TCTA TCTA TCTA --TA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3516698 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3516746 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3516794 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3516842 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA --TA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3516888 --TA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3516934 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3516982 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517030 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517078 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3517126 TCTA TC-- TCTA TCTA TCTA TCTA TCTA TCTA TCTA CTATA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA -TCTA TCTA TCTA
3517173 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517221 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517269 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517317 TCTA TCTA TCTA TCTA TCTA T-TA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517364 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517412 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517460 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517508 TCTA TCTA TCTA TCTA TCTA TCTA TCTA -CTA TCTA TCTA TC-- TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517553 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA --TA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517599 TCTA TCTA TCTA TCTA TCTA TCTA TCTA --TA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517645 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517693 TCTA TCTA TCTA TCTA TCTA TCTA TC-- TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517739 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TC-- TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517785 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TC--
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517831 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517879 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA --TA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517925 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3517973 TCTA TCTA TC-- TCTA TCTA TCTA TCTA TCTA TC-- TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3518017 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3518065 TCTA TCTA TCTG TCTA TCTA TCTG TCTA TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3518113 TCTA TCTG TCTA TCTG TCTA TCTA TCTG TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3518161 TCTG TCTA TCTA TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3518209 TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTA TCTG TCTG TCTG TCTTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TC-TA
* * * * * * * * * *
3518258 TCTG TCTA TCTG TCTG TCTG TCTG TC-G TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3518305 TCTG TCTA TCTG TCTA TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3518353 TCTA TCTG TCTG TCTA TCTG TCTG TCTG TCTA TCTA TCTG TCTA TC--
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3518399 TCTA TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTA TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
3518447 TCTA TCTA TCTA TCTA TCTA TCTTA TCTG TCTA TCTA TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TC-TA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
3518496 TCTA TCTA TCTA TCTG TCTG TCTA TCTA --TA TCTA TCTA TCTG TC-A
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3518541 TCTG TCTA TCTG TCTA TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3518589 TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3518637 TCTA TCTA TCTA TCTA TCTA TCTA --TA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3518683 TTCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 -TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3518732 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3518780 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3518828 TCTA TCTA TCTA TCTA TCTA TCTA TCTC T-TA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3518875 TCTA TCTA TCTA TCTA --TA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3518921 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3518969 ACTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3519017 TCTA TCTG TCTA TCT- GCTA TCTG CCTA TCTA TCTG TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3519064 TCTG TCTG TCTA TCTG TCTG TCTG TCTA TCTA TCTG TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3519112 TCTG TCTA TCTG TCTG TCTG TCTA TCTA TCTG TCTG TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3519160 TCTG TCTA TCTA TCTG TCTA TCTG TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3519208 TCTA TCTA TCTG TCTG TCTG TCTC TCTG TCTA TCTG TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3519256 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3519304 TCTA TCTG TCTG TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3519352 TCTG TCTG TCTG TCTG TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3519400 TCTG TCTG TCTG TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3519448 TCTG TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
3519496 TCTA TCTC TCTA TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3519544 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3519592 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3519640 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3519688 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3519736 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TC-- TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3519782 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3519830 TCTA TCTA --TA TCTA TCTA TCTA TCTA TCTA --TA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3519874 TCTA TCTA TCTA TCTA --TA TCTA TCTA TCTA TCTA TCTA --TA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3519918 TCTA TCTA TCTA --TA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3519964 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520012 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520060 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
3520108 TCTA TCTA TCTA TCTA TCGA TCTA TCTA TCTA TCTA TCTA TATA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520156 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520204 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520252 TCTA TCTA TC-- TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520298 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA --TA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520344 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3520392 TATA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520440 TCTA TC-- TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520486 TCTA TCTA TCTA TCTA T-TA TCTA TCTA T-TA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520532 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520580 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520628 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3520676 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
3520724 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3520772 TC-- TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
3520818 TCTA TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
3520866 TCTC TCTC TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * * *
3520914 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
** * * * * * * ** ** **
3520962 TCCG TCTG TCTG TCTG TCTG TCTG TCTG TCCG TCTA TCCG TCTA TCCG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3521010 TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
3521058 TCTG TCTG TCTG TATG TCTG TCTA TCTG TCTA TATG TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3521106 TCTG TCTG TCTG TCTG TCTG TCTG TCTC TCTG TCTA TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3521154 TCTG TCTA TCTG TCTG TCTA TCTA TCTA TCTA TCTA TATG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3521202 TCTC TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTC TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3521250 TCTC TCTA TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3521298 TCTG TCTA TCTA TCTG TCTA TCTG TCTG TCTG TCTG TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3521346 TCTA TCTG TCTA TCTG TCTA TCTA TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3521394 TCTG TCTA TCTG TCTA CCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3521442 TCTA CCTA TCTG TCTA TCTG TCTG TCTA TCTG TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3521490 TCTG TCTG TCTA TCTG CCTA TCTA TCTA TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3521538 TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTA TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3521586 TCTA TCTA TCTG TCTA TCTG TCTG TCTA TCTA TCTA TCTA TATG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3521634 TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTC TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3521682 TCTG TCTA TCTA TCTG TCTG TCTA TCTA TCTG TCTG TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3521730 TCTG TCTA TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3521778 TCTG TCTG TCTG TCTG TCTG TC-- TCTA TCTA TCTA TCTA TCTC TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3521824 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3521872 TCTA TCTA TCTG TCTG TCTG TCTC TCTG TCTA TCTG TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
3521920 TCTG TCTC TCTA TCTA TCTA TC-A TCTA TCTA TCTA -ATA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3521966 TCTA TCTA TCTA TCTA TCTA TCTA --TA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3522012 TCTA TCTA TCTA TCTA TCTCA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCT-A TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3522061 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3522109 TCTA TCTA --TA TCTA TCTA TCTA TCTA --TA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3522153 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3522201 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3522249 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3522297 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3522345 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3522393 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3522441 TCTA TCTA TCTA TCTA TCTG TCTG TCTG TCTG TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
3522489 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *** * * * * * * * * *
3522537 TCTG TAGG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3522585 TCTG TCTG TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3522633 TCTA TCTG TCTG TCTA TCTA TCTA TCTA TCTA TATG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3522681 TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTC TCTG TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3522729 TCTG TCTG TCTG TCTA TCTA TCTG TCTA TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3522777 TCTG TCTG TCTA TCTG TCTG TCTG TCTA TCTG TCTC TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * ** * *
3522825 TCTA TCTG TCTA TCTC TCTA TCTA TCCG TCTA TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3522873 TCTA TCTA TTTG TCTG TCTA TCTA TCTG TCTA TCTG TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3522921 TCTA TCTG TCTA TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3522969 TCTG TCTA CCTA TCTG TCTA TCTG TCTA TCTG TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3523017 TCTG TCTA TCTG TCTG TCTA TCTG CCTA TCTA TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
3523065 TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
3523113 TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
3523161 TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTC TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
3523209 TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * ** *
3523257 TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCCG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * ** ** ** *
3523305 TCTG TCTG TCTG TCTG TCTG TCCG TCTA TCCG TCTA TCCG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3523353 TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTG TCTG TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
3523401 TCTG TATG TCTG TCTA TCTG TCTA TATG TCTA TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3523449 TCTG TCTG TCTG TCTG TC-- TCTT TCTA TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3523495 TCTG TCTG TCTA TCTA TCTA TCTA TCTA TATG TCTA TCTG TCTC TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3523543 TCTA TCTG TCTA TCTG TCTA TCTG TCTC TCTG TCTG TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * **
3523591 TCTG TCTA TCTA TCTG TCTA TCTA TCTG TCTA TCTC TCTA TCTA TCCG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3523639 TCTA TCTA TCTG TCTA TCTG TCTA TCTA TCTG TCTG TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3523687 TCTA TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3523735 TCTA TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3523783 CCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA CCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3523831 TCTG TCTG TCTA TCTG TCTG TCTA TCTG TCTA TCTG TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3523879 CCTA TCTA TCTA TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3523927 TCTG TCTG TCTG TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3523975 TCTG TCTA TCTG TCTG TCTA TCTA TCTA TCTA TCTA TATG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3524023 TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTC TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
3524071 TCTA TCTG TCTG TCTG TCTA TCTA TCTG TCTG TCTG TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3524119 TCTA TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3524167 TCTG TCTG TCTG TCTG TCTG TC-- TCTA TCTA TCTA TCTA TCTC TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3524213 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3524261 TCTA TCTA TCTG TCTG TCTG TCTC TCTG TCTA TCTG TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3524309 TCTG TCTC TCTA TCTA TCTA TCTA TCTA TCTG TCTC TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
3524357 TCTA TCTA TCTA TCTG TCTA TCTG TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3524405 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3524453 TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3524501 TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3524549 TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3524597 TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3524645 TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3524693 TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3524741 TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3524789 TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
3524837 TCTG TCTA TCTG TCTA TCTA TCTA TCTC TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
3524885 TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3524933 TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
3524981 TCTA TCTG TCTA TCTA TCTA TCTG TCTA TCTG TCTA TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
3525029 TCTG TCTA TCTA TCTC TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3525077 TCTA TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525125 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525173 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525221 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3525269 TCTA TCTA TCTA TATA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525317 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525365 TCTA --TA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3525411 TCTA TCTA TCTA TCTA TCTA TCTA TATA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525459 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525507 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525555 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525603 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA --TA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525649 TCTA TCTA TCTA TCTA --TA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525695 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3525743 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
3525791 TCTG TTTG TCTA TCTG TCTA TCTG TCTA TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3525839 TCTG TCTG TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * * *
3525887 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * ** * * * * * * ** **
3525935 TCTG TCTG TCCG TCTG TCTG TCTG TCTG TCTG TCTG TCCG TCTA TCCG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
** * * * * * *
3525983 TCTA TCCG TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
3526031 TCTG TCTA TCTG TCTG TCTG TATG TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * * *
3526079 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
3526127 TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
** * ** * ** * * * ** * ** *
3526175 TCCG TCTG TCCG TCTG TCCG TCTG TCTG TCTG TCCG TCTG TCCG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
** * ** * ** * ** ** **
3526223 TCCG TCTG TCCG TCTG TCCG TCTG TCCG TCTA TCCG TCTA TCCG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
** ** ** ** ** **
3526271 TCCG TCTA TCCG TCTA TCCG TCTA TCCG TCTA TCCG TCTA TCCG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
** *
3526319 TCCG TCTA TCTA TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3526367 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3526415 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3526463 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
3526511 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
3526559 TCT
1 TCT
3526562 CATTTGGCTA
Statistics
Matches: 13585, Mismatches: 1176, Indels: 232
0.91 0.08 0.02
Matches are distributed among these distances:
2 94 0.01
3 31 0.00
4 13433 0.99
5 27 0.00
ACGTcount: A:0.18, C:0.25, G:0.07, T:0.50
Consensus pattern (4 bp):
TCTA
Found at i:3526790 original size:18 final size:18
Alignment explanation
Indices: 3526753--3526790 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
3526743 TTTTAAGATT
*
3526753 TTATATTCGATTTAAATA
1 TTATATTCGATTCAAATA
*
3526771 TTATATTCGATTCAATTA
1 TTATATTCGATTCAAATA
3526789 TT
1 TT
3526791 CGAATATTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.53
Consensus pattern (18 bp):
TTATATTCGATTCAAATA
Found at i:3527128 original size:44 final size:44
Alignment explanation
Indices: 3527065--3527177 Score: 192
Period size: 44 Copynumber: 2.6 Consensus size: 44
3527055 AAAATGGTAC
*
3527065 CGATACTCCTCTGACGGTATCGATACTACTATACATAGTAGTAA
1 CGATACTCCTCTGACGGTATCGATACTACTATAAATAGTAGTAA
*
3527109 CGATACTCCTCTGACGGTATCGATACTACTATAAATAGTAGTAT
1 CGATACTCCTCTGACGGTATCGATACTACTATAAATAGTAGTAA
3527153 CGATACTCCT-TGAACGGTATCGATA
1 CGATACTCCTCTG-ACGGTATCGATA
3527178 TCATTAGGTT
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
43 2 0.03
44 64 0.97
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (44 bp):
CGATACTCCTCTGACGGTATCGATACTACTATAAATAGTAGTAA
Found at i:3527152 original size:24 final size:24
Alignment explanation
Indices: 3527081--3527159 Score: 76
Period size: 24 Copynumber: 3.5 Consensus size: 24
3527071 TCCTCTGACG
*
3527081 GTATCGATACTACTATACATAGTA
1 GTATCGATACTACTATAAATAGTA
* * * * *
3527105 GTAACGATACTCCTCT-GA-CG--
1 GTATCGATACTACTATAAATAGTA
3527125 GTATCGATACTACTATAAATAGTA
1 GTATCGATACTACTATAAATAGTA
3527149 GTATCGATACT
1 GTATCGATACT
3527160 CCTTGAACGG
Statistics
Matches: 41, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
20 13 0.32
21 1 0.02
22 2 0.05
23 1 0.02
24 24 0.59
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (24 bp):
GTATCGATACTACTATAAATAGTA
Found at i:3527174 original size:20 final size:21
Alignment explanation
Indices: 3527060--3527177 Score: 64
Period size: 20 Copynumber: 5.5 Consensus size: 21
3527050 ATGCCAAAAT
* *
3527060 GGTACCGATACTCCTCTG-AC
1 GGTATCGATACTCCTATGAAC
* *
3527080 GGTATCGATACTACTAT-ACATA
1 GGTATCGATACTCCTATGA-A-C
* *
3527102 GTAGTAACGATACTCCTCTG-AC
1 G--GTATCGATACTCCTATGAAC
* * *
3527124 GGTATCGATACTACTATAAATA
1 GGTATCGATACTCCTATGAA-C
3527146 GTAGTATCGATACTCCT-TGAAC
1 G--GTATCGATACTCCTATGAAC
3527168 GGTATCGATA
1 GGTATCGATA
3527178 TCATTAGGTT
Statistics
Matches: 72, Mismatches: 16, Indels: 20
0.67 0.15 0.19
Matches are distributed among these distances:
20 36 0.50
21 2 0.03
22 4 0.06
23 4 0.06
24 26 0.36
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (21 bp):
GGTATCGATACTCCTATGAAC
Found at i:3532293 original size:28 final size:28
Alignment explanation
Indices: 3532238--3532338 Score: 175
Period size: 28 Copynumber: 3.5 Consensus size: 28
3532228 TCAATTTTCA
3532238 TTAAGGGTAAATTAGTAAAGATATTTTAATT
1 TTAAGGGTAAA-T--TAAAGATATTTTAATT
3532269 TTAAGGGTAAATTAAAGATATTTTAATT
1 TTAAGGGTAAATTAAAGATATTTTAATT
3532297 TTAAGGGTAAATTAAAGATATTTTAATT
1 TTAAGGGTAAATTAAAGATATTTTAATT
3532325 TTAAGGGTAAATTA
1 TTAAGGGTAAATTA
3532339 GTAATTTAAC
Statistics
Matches: 70, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
28 58 0.83
30 1 0.01
31 11 0.16
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.42
Consensus pattern (28 bp):
TTAAGGGTAAATTAAAGATATTTTAATT
Found at i:3534370 original size:19 final size:21
Alignment explanation
Indices: 3534348--3534387 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
3534338 TGATCGTTAC
3534348 ATATGA-TATTATCATGAACA
1 ATATGATTATTATCATGAACA
3534368 TATATGATTATTATCATGAA
1 -ATATGATTATTATCATGAA
3534388 TGATATTTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.40
Consensus pattern (21 bp):
ATATGATTATTATCATGAACA
Found at i:3534594 original size:38 final size:38
Alignment explanation
Indices: 3534543--3534687 Score: 236
Period size: 38 Copynumber: 3.8 Consensus size: 38
3534533 TCAATTTAGC
* * *
3534543 ACTTCGGTACATATGGTGGGCACGACCTTATGTGTAGC
1 ACTTTGGTGCATATGGTGGGCACGACCTTATGTGTAGA
*
3534581 ACTTTGGTGCATATGGTGGGCACGACCTTATGTGTTGA
1 ACTTTGGTGCATATGGTGGGCACGACCTTATGTGTAGA
*
3534619 ACTTTGGTGCATATGGTGGACACGACCTTATGTGTAGA
1 ACTTTGGTGCATATGGTGGGCACGACCTTATGTGTAGA
*
3534657 ACTTTAGTGCATATGGTGGGCACGACCTTAT
1 ACTTTGGTGCATATGGTGGGCACGACCTTAT
3534688 ATCTAAGCAT
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 99 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (38 bp):
ACTTTGGTGCATATGGTGGGCACGACCTTATGTGTAGA
Found at i:3540954 original size:39 final size:37
Alignment explanation
Indices: 3540861--3540955 Score: 127
Period size: 38 Copynumber: 2.5 Consensus size: 37
3540851 CATATCAATT
**
3540861 TAGCACTTTGGTGCATATGGTGGGCACGATGTTATGTG
1 TAGCAC-TTGGTGCATATGGTGGGCACGACCTTATGTG
*
3540899 TAGCACTTCGGTGCATATGGTGGGCACGGCCTTATGTG
1 TAGCACTT-GGTGCATATGGTGGGCACGACCTTATGTG
3540937 TAAGCACTATGGTGCATAT
1 T-AGCACT-TGGTGCATAT
3540956 ATTTAACTTG
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
37 2 0.04
38 33 0.65
39 15 0.29
40 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.32
Consensus pattern (37 bp):
TAGCACTTGGTGCATATGGTGGGCACGACCTTATGTG
Found at i:3543250 original size:46 final size:46
Alignment explanation
Indices: 3543183--3543284 Score: 143
Period size: 46 Copynumber: 2.2 Consensus size: 46
3543173 GAGTCGAGGG
* *
3543183 TTCTACGCGGTCCTTCGGGACAAATCTATATGGTC-CTTCAGGACAA
1 TTCTACGTGGTCCTTCGGGACAAAACTATATGG-CACTTCAGGACAA
* * *
3543229 TTCTACGTGGTCCTTTGGGACAAAACTATGTGGCACTTCAGTACAA
1 TTCTACGTGGTCCTTCGGGACAAAACTATATGGCACTTCAGGACAA
3543275 TTCTACGTGG
1 TTCTACGTGG
3543285 CACTTCAGTG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
45 1 0.02
46 49 0.98
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.30
Consensus pattern (46 bp):
TTCTACGTGGTCCTTCGGGACAAAACTATATGGCACTTCAGGACAA
Found at i:3543261 original size:23 final size:23
Alignment explanation
Indices: 3543191--3543261 Score: 88
Period size: 23 Copynumber: 3.1 Consensus size: 23
3543181 GGTTCTACGC
*
3543191 GGTCCTTCGGGACAAATCTATAT
1 GGTCCTTCGGGACAAATCTATGT
* * *
3543214 GGTCCTTCAGGACAATTCTACGT
1 GGTCCTTCGGGACAAATCTATGT
* *
3543237 GGTCCTTTGGGACAAAACTATGT
1 GGTCCTTCGGGACAAATCTATGT
3543260 GG
1 GG
3543262 CACTTCAGTA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (23 bp):
GGTCCTTCGGGACAAATCTATGT
Found at i:3543274 original size:23 final size:23
Alignment explanation
Indices: 3543248--3543298 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
3543238 GTCCTTTGGG
*
3543248 ACAAAACTATGTGGCACTTCAGT
1 ACAAAACTACGTGGCACTTCAGT
**
3543271 ACAATTCTACGTGGCACTTCAGT
1 ACAAAACTACGTGGCACTTCAGT
*
3543294 GCAAA
1 ACAAA
3543299 TTATATGAGC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (23 bp):
ACAAAACTACGTGGCACTTCAGT
Found at i:3548441 original size:16 final size:16
Alignment explanation
Indices: 3548420--3548452 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3548410 ATTTTGAATC
3548420 AAAAT-ATATATAAATA
1 AAAATAATA-ATAAATA
3548436 AAAATAATAATAAATA
1 AAAATAATAATAAATA
3548452 A
1 A
3548453 TTTAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAATAATAATAAATA
Found at i:3553347 original size:20 final size:20
Alignment explanation
Indices: 3553322--3553375 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
3553312 TCTGCAGACT
3553322 CCAACTGATTTTCTTAGCCA
1 CCAACTGATTTTCTTAGCCA
* *
3553342 CCAACT-AGTTTTCTTGGTCA
1 CCAACTGA-TTTTCTTAGCCA
*
3553362 CCAACTGGTTTTCT
1 CCAACTGATTTTCT
3553376 GGTTTCACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.20, C:0.28, G:0.13, T:0.39
Consensus pattern (20 bp):
CCAACTGATTTTCTTAGCCA
Found at i:3553851 original size:34 final size:34
Alignment explanation
Indices: 3553808--3553876 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
3553798 ACCTGCAGAC
* * * * *
3553808 TGACTTGAACTAATATTGACCTTAGGTTCATATT
1 TGACTTGAACCAATATAGAACATAGGTCCATATT
3553842 TGACTTGAACCAATATAGAACATAGGTCCATATT
1 TGACTTGAACCAATATAGAACATAGGTCCATATT
3553876 T
1 T
3553877 TAGGAAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (34 bp):
TGACTTGAACCAATATAGAACATAGGTCCATATT
Found at i:3556941 original size:12 final size:12
Alignment explanation
Indices: 3556924--3556956 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
3556914 ATTAAGAAAG
3556924 TATCGATACATA
1 TATCGATACATA
3556936 TATCGATACATA
1 TATCGATACATA
3556948 TATCGATAC
1 TATCGATAC
3556957 CGAAACCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.33
Consensus pattern (12 bp):
TATCGATACATA
Found at i:3574823 original size:23 final size:24
Alignment explanation
Indices: 3574793--3574842 Score: 84
Period size: 23 Copynumber: 2.1 Consensus size: 24
3574783 ACACATATTT
*
3574793 AAAAAGTATTTTAATA-TTAATTA
1 AAAAAGTATTTTAATATTTAAATA
3574816 AAAAAGTATTTTAATATTTAAATA
1 AAAAAGTATTTTAATATTTAAATA
3574840 AAA
1 AAA
3574843 TAAAAAATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 16 0.64
24 9 0.36
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (24 bp):
AAAAAGTATTTTAATATTTAAATA
Found at i:3575215 original size:2 final size:2
Alignment explanation
Indices: 3575210--3575243 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
3575200 AAATTTTTTA
3575210 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3575244 TCATATTGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3575703 original size:44 final size:45
Alignment explanation
Indices: 3575606--3575705 Score: 105
Period size: 44 Copynumber: 2.3 Consensus size: 45
3575596 TTTTTCTTTT
* * *
3575606 GTGGCGTTT-TGTCCCAAAAACGCCGCTAAATGTTCTGACATATA
1 GTGGCGTTTGTGTCCAAAAAACGACGCTAAATGTTATGACATATA
* ** * * *
3575650 ATGATGTTTGT-TCCAAAAAACGATGCTAAATGTTATGTCGTATA
1 GTGGCGTTTGTGTCCAAAAAACGACGCTAAATGTTATGACATATA
3575694 GTGGCGTTTGTG
1 GTGGCGTTTGTG
3575706 AATGTAAAAC
Statistics
Matches: 42, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
44 41 0.98
45 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (45 bp):
GTGGCGTTTGTGTCCAAAAAACGACGCTAAATGTTATGACATATA
Found at i:3578941 original size:41 final size:41
Alignment explanation
Indices: 3578850--3578948 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 41
3578840 TTTATTCAAA
* * **
3578850 AAACGCCACTAAAGTACGAGTCTTTAGTGGCGCTTGTCTTT
1 AAACGCCACTAAAGTACGAGTCTATAGTGGCGCTTGTATAC
* * *
3578891 AAACACCACTAAAGTACGAGTCTATAGTTGCGTTTGTATAC
1 AAACGCCACTAAAGTACGAGTCTATAGTGGCGCTTGTATAC
*
3578932 AAAGGCCACTAAAGTAC
1 AAACGCCACTAAAGTAC
3578949 AGTATTTAGC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (41 bp):
AAACGCCACTAAAGTACGAGTCTATAGTGGCGCTTGTATAC
Found at i:3579022 original size:41 final size:41
Alignment explanation
Indices: 3578969--3579061 Score: 150
Period size: 41 Copynumber: 2.3 Consensus size: 41
3578959 AGAGTTTATA
*
3578969 AAAAATGCCACTAAAGTACTAGGTTTTAGCGGTGTCTGTCC
1 AAAAATGCCACTAAAGTACTAGGTTTTAGCGGCGTCTGTCC
* * *
3579010 AAAAATGCCACTAAAGTGCTAGGTTTTAGCGGCGTTTGTCT
1 AAAAATGCCACTAAAGTACTAGGTTTTAGCGGCGTCTGTCC
3579051 AAAAATGCCAC
1 AAAAATGCCAC
3579062 GATATATGTG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (41 bp):
AAAAATGCCACTAAAGTACTAGGTTTTAGCGGCGTCTGTCC
Found at i:3581834 original size:19 final size:20
Alignment explanation
Indices: 3581800--3581837 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
3581790 ATATATAAAT
3581800 ATATATATGAATGTATGTAC
1 ATATATATGAATGTATGTAC
*
3581820 ATATGTATG-ATGTATGTA
1 ATATATATGAATGTATGTA
3581838 TGATGCATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.03, G:0.18, T:0.42
Consensus pattern (20 bp):
ATATATATGAATGTATGTAC
Found at i:3581871 original size:2 final size:2
Alignment explanation
Indices: 3581866--3582043 Score: 68
Period size: 2 Copynumber: 91.0 Consensus size: 2
3581856 AAACACACAC
* *
3581866 AT AT AT AC AT AT -T AT AC AT AT AT AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
3581906 AT AT A- AT -T AT GT AT GAT CA- AT -T AT GT AT GT -T TT A- AT AT
1 AT AT AT AT AT AT AT AT -AT -AT AT AT AT AT AT AT AT AT AT AT AT
* * ** * **
3581944 GT AT AT AT GT GC AT AT AT AT TT AT AT AT A- AGT AT AT AT AT GC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
* * * * **
3581986 AT TT AT GT AT AT AT AT AT AT AT GAT GT AT GT AT GAT GC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT -AT AT AT AT AT
*
3582030 AT AT TT AT AT AT AT
1 AT AT AT AT AT AT AT
3582044 TTAAATATGT
Statistics
Matches: 126, Mismatches: 37, Indels: 26
0.67 0.20 0.14
Matches are distributed among these distances:
1 9 0.07
2 109 0.87
3 8 0.06
ACGTcount: A:0.40, C:0.03, G:0.08, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3581890 original size:19 final size:19
Alignment explanation
Indices: 3581866--3581910 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
3581856 AAACACACAC
3581866 ATATATACATATTATACAT
1 ATATATACATATTATACAT
* *
3581885 ATATATATATATTATATAT
1 ATATATACATATTATACAT
3581904 ATATATA
1 ATATATA
3581911 ATTATGTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (19 bp):
ATATATACATATTATACAT
Found at i:3581892 original size:15 final size:17
Alignment explanation
Indices: 3581864--3581914 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
3581854 TTAAACACAC
*
3581864 ACATATATACATAT-TAT
1 ACATATATATATATAT-T
3581881 ACATATATATATATATT
1 ACATATATATATATATT
*
3581898 ATATATATATATA-ATT
1 ACATATATATATATATT
3581914 A
1 A
3581915 TGTATGATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 4 0.13
17 26 0.84
18 1 0.03
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
ACATATATATATATATT
Found at i:3582007 original size:38 final size:38
Alignment explanation
Indices: 3581956--3582043 Score: 108
Period size: 38 Copynumber: 2.4 Consensus size: 38
3581946 ATATATGTGC
* * *
3581956 ATATATATTTATATAT-AAGTATATAT-ATGCATTTAT
1 ATATATATATATATATGATGTATATATGATGCATATAT
* *
3581992 GTATATATATATATATGATGTATGTATGATGCATATAT
1 ATATATATATATATATGATGTATATATGATGCATATAT
*
3582030 ATATTTATATATAT
1 ATATATATATATAT
3582044 TTAAATATGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
36 14 0.33
37 8 0.19
38 21 0.49
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (38 bp):
ATATATATATATATATGATGTATATATGATGCATATAT
Found at i:3583829 original size:21 final size:21
Alignment explanation
Indices: 3583803--3583842 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
3583793 GTTGGGAGCG
3583803 TAGGTGTATCAGTACACTCTT
1 TAGGTGTATCAGTACACTCTT
3583824 TAGGTGTATCAGTACACTC
1 TAGGTGTATCAGTACACTC
3583843 AGTGTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (21 bp):
TAGGTGTATCAGTACACTCTT
Found at i:3584330 original size:13 final size:13
Alignment explanation
Indices: 3584312--3584345 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
3584302 TAAGATTTTC
*
3584312 TTTGAAAATCATT
1 TTTGAAAATCAAT
3584325 TTTG-AAATCAAT
1 TTTGAAAATCAAT
3584337 TTTGAAAAT
1 TTTGAAAAT
3584346 TACTTCCCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (13 bp):
TTTGAAAATCAAT
Found at i:3586639 original size:23 final size:21
Alignment explanation
Indices: 3586611--3586670 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 21
3586601 TACACTCCTA
3586611 AGTGTATCGATACATATTCA-
1 AGTGTATCGATACATATTCAT
* *
3586631 AGGAATGTATCGGTACACATTCAT
1 A-G--TGTATCGATACATATTCAT
3586655 AGTGTATCGATACATA
1 AGTGTATCGATACATA
3586671 GCGAGGGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 1 0.03
21 13 0.41
23 17 0.53
24 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (21 bp):
AGTGTATCGATACATATTCAT
Found at i:3590963 original size:13 final size:13
Alignment explanation
Indices: 3590947--3590973 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3590937 TCTATGCATG
3590947 AGATAAATGCAAC
1 AGATAAATGCAAC
3590960 AGATAAATGCAAC
1 AGATAAATGCAAC
3590973 A
1 A
3590974 TAATTACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.15
Consensus pattern (13 bp):
AGATAAATGCAAC
Found at i:3594760 original size:21 final size:21
Alignment explanation
Indices: 3594734--3594813 Score: 142
Period size: 21 Copynumber: 3.8 Consensus size: 21
3594724 TGGAAACGTA
3594734 GGTGTATCGATACACTCTTTG
1 GGTGTATCGATACACTCTTTG
3594755 GGTGTATCGATACACTCTTTG
1 GGTGTATCGATACACTCTTTG
*
3594776 GGTGTATCGGTACACTCTTTG
1 GGTGTATCGATACACTCTTTG
*
3594797 GGTGTATCGGTACACTC
1 GGTGTATCGATACACTC
3594814 AGTGTAAAAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 58 1.00
ACGTcount: A:0.17, C:0.20, G:0.26, T:0.36
Consensus pattern (21 bp):
GGTGTATCGATACACTCTTTG
Found at i:3597880 original size:8 final size:8
Alignment explanation
Indices: 3597867--3597931 Score: 71
Period size: 8 Copynumber: 8.1 Consensus size: 8
3597857 TTCTTTTTTC
3597867 TTTTCTTT
1 TTTTCTTT
3597875 TTTTCTTT
1 TTTTCTTT
3597883 TCTTT-TTT
1 T-TTTCTTT
3597891 TCTTTCTTT
1 T-TTTCTTT
3597900 TTTTCTTT
1 TTTTCTTT
*
3597908 CTTT-TTT
1 TTTTCTTT
*
3597915 TCTTCTTT
1 TTTTCTTT
*
3597923 TTGTCTTT
1 TTTTCTTT
3597931 T
1 T
3597932 CTCTCTTCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
7 5 0.10
8 37 0.76
9 7 0.14
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (8 bp):
TTTTCTTT
Found at i:3597885 original size:25 final size:24
Alignment explanation
Indices: 3597852--3597933 Score: 112
Period size: 25 Copynumber: 3.4 Consensus size: 24
3597842 TCTTTTGAAA
*
3597852 TTCTATTCTTTTTTCTTTTCTTTTT
1 TTCTTTTCTTTTTT-TTTTCTTTTT
3597877 TTCTTTTCTTTTTTTCTTTCTTTTT
1 TTCTTTTCTTTTTTT-TTTCTTTTT
*
3597902 TTC-TTTCTTTTTTTCTTCTTTTT
1 TTCTTTTCTTTTTTTTTTCTTTTT
*
3597925 GTCTTTTCT
1 TTCTTTTCT
3597934 CTCTTCTTGT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
23 10 0.19
24 17 0.33
25 25 0.48
ACGTcount: A:0.01, C:0.17, G:0.01, T:0.80
Consensus pattern (24 bp):
TTCTTTTCTTTTTTTTTTCTTTTT
Found at i:3597933 original size:13 final size:13
Alignment explanation
Indices: 3597860--3597933 Score: 111
Period size: 12 Copynumber: 6.0 Consensus size: 13
3597850 AATTCTATTC
3597860 TTTTTTCTTTTCT
1 TTTTTTCTTTTCT
3597873 TTTTTTCTTTTCT
1 TTTTTTCTTTTCT
3597886 TTTTTTC-TTTCT
1 TTTTTTCTTTTCT
3597898 TTTTTTC-TTTCT
1 TTTTTTCTTTTCT
3597910 TTTTTTC--TTCT
1 TTTTTTCTTTTCT
*
3597921 TTTTGTCTTTTCT
1 TTTTTTCTTTTCT
3597934 CTCTTCTTGT
Statistics
Matches: 58, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
11 10 0.17
12 24 0.41
13 24 0.41
ACGTcount: A:0.00, C:0.16, G:0.01, T:0.82
Consensus pattern (13 bp):
TTTTTTCTTTTCT
Found at i:3597938 original size:20 final size:20
Alignment explanation
Indices: 3597857--3597941 Score: 86
Period size: 20 Copynumber: 4.2 Consensus size: 20
3597847 TGAAATTCTA
*
3597857 TTCTTTT-TTCTTTTCTTTTT
1 TTCTTTTCTTCTTTTC-TTTC
*
3597877 TTCTTTTCTTTTTTTCTTTC
1 TTCTTTTCTTCTTTTCTTTC
*
3597897 TTTTTTTCTTTCTTTT-TTTC
1 TTCTTTTC-TTCTTTTCTTTC
*
3597917 TTCTTTT-TGTCTTTTCTCTC
1 TTCTTTTCT-TCTTTTCTTTC
3597937 TTCTT
1 TTCTT
3597942 GTACTCCAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
18 1 0.02
19 6 0.11
20 35 0.64
21 13 0.24
ACGTcount: A:0.00, C:0.19, G:0.01, T:0.80
Consensus pattern (20 bp):
TTCTTTTCTTCTTTTCTTTC
Found at i:3599546 original size:2 final size:2
Alignment explanation
Indices: 3599529--3599580 Score: 88
Period size: 2 Copynumber: 26.5 Consensus size: 2
3599519 TCATAATAAC
*
3599529 TA TA GA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3599570 TA TA TA TA TA T
1 TA TA TA TA TA T
3599581 GAAAATAACT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:3600100 original size:33 final size:32
Alignment explanation
Indices: 3600058--3600145 Score: 115
Period size: 33 Copynumber: 2.7 Consensus size: 32
3600048 TACGACTATC
*
3600058 TTAGGTTGATACTTACAAGTGTAAT-CCTGGGAA
1 TTAGGTTGATACTTA-AAGTGT-ATGCATGGGAA
*
3600091 TTAGGTTGATACTTAAAAGTGTATGCATGTGAA
1 TTAGGTTGATACTT-AAAGTGTATGCATGGGAA
3600124 TTAGGTTGATACTTTAAAGTGT
1 TTAGGTTGATAC-TTAAAGTGT
3600146 TTGGGTCACG
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
32 2 0.04
33 45 0.90
34 3 0.06
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.38
Consensus pattern (32 bp):
TTAGGTTGATACTTAAAGTGTATGCATGGGAA
Found at i:3602161 original size:33 final size:33
Alignment explanation
Indices: 3602098--3602161 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
3602088 GACTTTCTTG
* * * *
3602098 GGTTGATATTTACTAGTGTAATCTTAGGAATTA
1 GGTTGATACTTACAAGTGTAAGCATAGGAATTA
*
3602131 GGTTGATACTTACAAGTGTAAGCATGGGAAT
1 GGTTGATACTTACAAGTGTAAGCATAGGAAT
3602162 GAAGAGTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (33 bp):
GGTTGATACTTACAAGTGTAAGCATAGGAATTA
Found at i:3602968 original size:444 final size:444
Alignment explanation
Indices: 3602312--3603135 Score: 1097
Period size: 443 Copynumber: 1.9 Consensus size: 444
3602302 TCGATCGCTA
* * *
3602312 ATATAAAACACATAATTCTAAACATAAAATTATGCAATTAAGACATATCATTTTTTACAGATGTG
1 ATATAAAACACATAATTATAAACATAAAATTATGAAATTAAGACATATCATTTTTTACAGATATG
* * * * * * ** *
3602377 GAATTTTGCGTAAATCTTCACTTCACTTTTTGCCTTATTTCTCTATTGGACTCATATTCCTCTTA
66 AAATTATGCATAAATCTTCACTTCACGTTTGGCCTTATTTCTCCACCGGACACATATTCCTCTTA
* * * *
3602442 TATGGGTCACGATGTGTCAATAAAGAGATACTTAACGAATTCCAGTAGGGGTGCCTTATATTCTG
131 AATGGGTCACGATGTGACAATAAAGAGATACTTAACGAATGCCAGTAGGGGTCCCTTATATTCTG
** *
3602507 GTCGGGTTTGGATGGGGTAAAAAATTTG-ACCTAACCCATGCACATGCCTAAGACTATCTTAGGT
196 GTCGGGTTTGGATGGGGT-AAAAATCAGAACC-AACCCATGCACATCCCTAAGACTATCTTAGGT
** * *
3602571 TGATACTTACAAGTGTAATCCT-AGAATTTATGTTGATACTTAAAAGTGTAAGCATGGGAATAAA
259 TGATACTTACAAGTACAATCCTGAGAA-TTATATTGATACTTAAAAGTGTAAGCATGGCAATAAA
* *
3602635 GAGTTTTCTTCCTTATACTGAAGCTCGAGACTAATG-GTTGCAAGCTTTTATTTGAACACTTAGG
323 GAGTTTTCTTCCTTAAACTAAAGCTCGAGACTAA-GAGTTGCAAGCTTTTATTTGAACACTTAGG
3602699 CTTATACTTGTTACTCCATCGGAATTTAAACCGTTGATGCGGAAAGATCGAATCCACC
387 CTTATACTTGTTACTCCATCGGAATTTAAACCGTTGATGCGGAAAGATCGAATCCACC
* * * *
3602757 ATATAGAACACATAATTATACATATAAAATTATGAAATT-TGAACATATC-TATTTTTACAGATA
1 ATATAAAACACATAATTATAAACATAAAATTATGAAATTAAG-ACATATCAT-TTTTTACAGATA
* *
3602820 TGAAATTATGCATAAATCTTCACTTCACGTTTGGCCTTGTTTCTCCACCGGACAC-TATTCTTCT
64 TGAAATTATGCATAAATCTTCACTTCACGTTTGGCCTTATTTCTCCACCGGACACATATTCCTCT
* * * **
3602884 TAAATGGTTCACGATGTGAC-ATTAAGAGGATACTTAGCGGGTGCCAGTAGGGGTCCCTTATATT
129 TAAATGGGTCACGATGTGACAATAAAGA-GATACTTAACGAATGCCAGTAGGGGTCCCTTATATT
** * ***
3602948 C-GGATCGGGTTTTTATGGGGTAAAAATCAGAACCAACTCATGTGTATCCCTAAGACTATCTTAG
193 CTGG-TCGGGTTTGGATGGGGTAAAAATCAGAACCAACCCATGCACATCCCTAAGACTATCTTAG
* * * *
3603012 GTTGATACTTACAAGTACAATCTTGGGAATTATATTGATATTTAAAAGTGTAAGCATGGCAATCA
257 GTTGATACTTACAAGTACAATCCTGAGAATTATATTGATACTTAAAAGTGTAAGCATGGCAATAA
*
3603077 AGAGTTTTCTTCCTTAAACTAAAGCTCGAGACTAAGAGTTGCGAGCTTTTATTTGAACA
322 AGAGTTTTCTTCCTTAAACTAAAGCTCGAGACTAAGAGTTGCAAGCTTTTATTTGAACA
3603136 ATTAAAATCA
Statistics
Matches: 325, Mismatches: 47, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
442 1 0.00
443 147 0.45
444 80 0.25
445 97 0.30
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (444 bp):
ATATAAAACACATAATTATAAACATAAAATTATGAAATTAAGACATATCATTTTTTACAGATATG
AAATTATGCATAAATCTTCACTTCACGTTTGGCCTTATTTCTCCACCGGACACATATTCCTCTTA
AATGGGTCACGATGTGACAATAAAGAGATACTTAACGAATGCCAGTAGGGGTCCCTTATATTCTG
GTCGGGTTTGGATGGGGTAAAAATCAGAACCAACCCATGCACATCCCTAAGACTATCTTAGGTTG
ATACTTACAAGTACAATCCTGAGAATTATATTGATACTTAAAAGTGTAAGCATGGCAATAAAGAG
TTTTCTTCCTTAAACTAAAGCTCGAGACTAAGAGTTGCAAGCTTTTATTTGAACACTTAGGCTTA
TACTTGTTACTCCATCGGAATTTAAACCGTTGATGCGGAAAGATCGAATCCACC
Found at i:3603647 original size:471 final size:474
Alignment explanation
Indices: 3602754--3603722 Score: 1064
Period size: 471 Copynumber: 2.1 Consensus size: 474
3602744 GATCGAATCC
* * * * *
3602754 ACCATATAGAACACATAATTATACATATAAAATTATGAAATTTGAACATATCTATTTTTACAGAT
1 ACCATATAAAACACATAATTCTACATATAAAACTATGAAATTTAAACATATCTATTTTTAAAGAT
* *
3602819 ATGAAATTATGCATAAATCTTCACTTCACGTTTGGCCTTGTTTCTCCACCGGACACTATTCTTCT
66 ATGAAATTATGCATAAATCTTCACTTCACGTTTGGCCTTGTTTCTCCACCAGACACTATTCTCCT
* * *
3602884 TAAATGGTTCACGATGTGACATTAAGAGGATACTTAGCGGGTGCCAGTAGGGGTCCCTTATATTC
131 TAAATGGTCCACGATGAGACATAAAGAGGATACTTAGCGGGTGCCAGTAGGGGTCCCTTATATTC
*** * ***
3602949 GGATCGGGTTTTTATGGGGTAAAAATCAGAACCAACTCATGTGTATCCCTAAGACTATCTTAGGT
196 GGATCGGGTTCGGATGGGGTAAAAATCAGAACCAACCCATGCACATCCCTAAGACTATCTTAGGT
* * * *
3603014 TGATACTTACAAGTACAATCTTGGGAATTATATTGATATTTAAAAGTGTAAGCATGGCAATCAAG
261 TGATACTTACAAGTACAATCCTGGGAATTAGATTGATACTTAAAAGTGTAAGCATAGCAATCAAG
* *
3603079 AGTTTTCTTCCTTAAACTAAAGCTCGAGACTAAGAGTTGCGAGCTTTTATTTGAACAATTAAAAT
326 AGTTTTCTTCCTTAAACTAAAGCTCGAGACTAAGAGTCGCGAGCTTTTATATGAACAATTAAAAT
* * * *** * *
3603144 CATACTTGTTTCTCCTTTAGAATCTAAACCTCTTTTATGGTCG-TGTCGTTGAT-ACGGAAAGAT
391 CATACTTGTTTCTCCATCAGAATCTAAACCTCTTATATGGT-GACACCATTAATGAC-GAAAGAT
* * *
3603207 GGAATCCATTGGCTGGTCTGA
454 GGAATCCATCGACTGGTCAGA
* *** * *
3603228 ACCATATAAAACACATAATTCTACATGTAAAACTATGCGTTTTAAATATATCATTTTTTTAAAGA
1 ACCATATAAAACACATAATTCTACATATAAAACTATGAAATTTAAACATATC-TATTTTTAAAGA
* ** * * * *
3603293 TGT-AGAATTATGTGTAAATCTTCACTTCACTTTTTGTCTTGTTTCTCCACCAGACTCTATTC-C
65 TATGA-AATTATGCATAAATCTTCACTTCACGTTTGGCCTTGTTTCTCCACCAGACACTATTCTC
* * * *
3603356 CTTAAATTGG-CCTCGATGAGACAATAAAG-GGATACTTAGCGGGTTCC-G-ATGGGTGCCTTAT
129 CTTAAA-TGGTCCACGATGAGAC-ATAAAGAGGATACTTAGCGGGTGCCAGTAGGGGTCCCTTAT
* * * ** ** *
3603417 ATTCGGGTCGTGTTCGGGTGGGG-AAAAATTGGATGCAACCCATGCACATCCCTAGGACTATCTT
192 ATTCGGATCGGGTTCGGATGGGGTAAAAATCAGAACCAACCCATGCACATCCCTAAGACTATCTT
** *
3603481 AGGTTGATACTTACAAGTGTAATCCTGGGAATTAGGA-TGATACTTAAAAGTGTAAGTATAAG-A
257 AGGTTGATACTTACAAGTACAATCCTGGGAATTA-GATTGATACTTAAAAGTGTAAGCAT-AGCA
* * * * * * **
3603544 ATCAAGAGTTTTCTTCCTTATACTAAAGGTTGGGA-TAAAGGGTCGTGAGCTTTTATATGAACGC
320 ATCAAGAGTTTTCTTCCTTAAACTAAAGCTCGAGACT-AAGAGTCGCGAGCTTTTATATGAACAA
** * * *
3603608 TTAAGCTTATACTTGTTTCTCCATCGGAATC-AGAACCTCTTATATGGTGACACCATTAATGTCG
384 TTAAAATCATACTTGTTTCTCCATCAGAATCTA-AACCTCTTATATGGTGACACCATTAATGACG
*
3603672 AAAGTTGGAATCCATCGACTGGTCAGA
448 AAAGATGGAATCCATCGACTGGTCAGA
*
3603699 ACCATATAAAATACATAATTCTAC
1 ACCATATAAAACACATAATTCTAC
3603723 TTATTACTTT
Statistics
Matches: 408, Mismatches: 77, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
470 3 0.01
471 227 0.56
472 31 0.08
473 1 0.00
474 76 0.19
475 70 0.17
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (474 bp):
ACCATATAAAACACATAATTCTACATATAAAACTATGAAATTTAAACATATCTATTTTTAAAGAT
ATGAAATTATGCATAAATCTTCACTTCACGTTTGGCCTTGTTTCTCCACCAGACACTATTCTCCT
TAAATGGTCCACGATGAGACATAAAGAGGATACTTAGCGGGTGCCAGTAGGGGTCCCTTATATTC
GGATCGGGTTCGGATGGGGTAAAAATCAGAACCAACCCATGCACATCCCTAAGACTATCTTAGGT
TGATACTTACAAGTACAATCCTGGGAATTAGATTGATACTTAAAAGTGTAAGCATAGCAATCAAG
AGTTTTCTTCCTTAAACTAAAGCTCGAGACTAAGAGTCGCGAGCTTTTATATGAACAATTAAAAT
CATACTTGTTTCTCCATCAGAATCTAAACCTCTTATATGGTGACACCATTAATGACGAAAGATGG
AATCCATCGACTGGTCAGA
Found at i:3604697 original size:31 final size:31
Alignment explanation
Indices: 3604655--3604717 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
3604645 CATCATGTCA
*
3604655 TCAAGCGAACCGAAAGCACCCAAACTTATTT
1 TCAAGCGAACCGAAAGCACCCAAACTGATTT
* * * *
3604686 TCAAGCTAACCGAATGGACCCGAACTGATTT
1 TCAAGCGAACCGAAAGCACCCAAACTGATTT
3604717 T
1 T
3604718 ATCCAAACTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (31 bp):
TCAAGCGAACCGAAAGCACCCAAACTGATTT
Found at i:3605696 original size:7 final size:7
Alignment explanation
Indices: 3605686--3605732 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
3605676 TGATTTAGGT
3605686 TTTAAGG
1 TTTAAGG
*
3605693 TTTACGG
1 TTTAAGG
3605700 TTTTAAGG
1 -TTTAAGG
*
3605708 TTTACGG
1 TTTAAGG
3605715 TTT-AGG
1 TTTAAGG
*
3605721 TTTATGG
1 TTTAAGG
3605728 TTTAA
1 TTTAA
3605733 TAGAAAAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
6 5 0.16
7 21 0.66
8 6 0.19
ACGTcount: A:0.21, C:0.04, G:0.26, T:0.49
Consensus pattern (7 bp):
TTTAAGG
Found at i:3605703 original size:15 final size:15
Alignment explanation
Indices: 3605679--3605730 Score: 74
Period size: 15 Copynumber: 3.7 Consensus size: 15
3605669 CTTAATATGA
3605679 TTTA-GGTTTTAAGG
1 TTTACGGTTTTAAGG
3605693 TTTACGGTTTTAAGG
1 TTTACGGTTTTAAGG
3605708 TTTACGG-TTT-AGG
1 TTTACGGTTTTAAGG
*
3605721 TTTATGGTTT
1 TTTACGGTTT
3605731 AATAGAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
13 9 0.26
14 9 0.26
15 17 0.49
ACGTcount: A:0.17, C:0.04, G:0.27, T:0.52
Consensus pattern (15 bp):
TTTACGGTTTTAAGG
Found at i:3605723 original size:13 final size:13
Alignment explanation
Indices: 3605690--3605731 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
3605680 TTAGGTTTTA
3605690 AGGTTTACGGTTTT
1 AGGTTTACGG-TTT
3605704 AAGGTTTACGGTTT
1 -AGGTTTACGGTTT
*
3605718 AGGTTTATGGTTT
1 AGGTTTACGGTTT
3605731 A
1 A
3605732 ATAGAAAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 13 0.50
14 3 0.12
15 10 0.38
ACGTcount: A:0.19, C:0.05, G:0.29, T:0.48
Consensus pattern (13 bp):
AGGTTTACGGTTT
Found at i:3606974 original size:65 final size:66
Alignment explanation
Indices: 3606865--3606989 Score: 198
Period size: 65 Copynumber: 1.9 Consensus size: 66
3606855 GGAGCCACTA
*
3606865 GAGGGGAGTGCCCTCAGGTCCATAAGGACTTACCCAATGCACAAAACAAAGAAGCAACCCCCACC
1 GAGGGGAGTGCCCTCAGGTCCATAAGGACCTACCCAATGCACAAAACAAAGAAGCAACCCCCACC
3606930 T
66 T
* * * *
3606931 GAGGGGAGTGCCCTCAGGTCTAT-AGGACCTACCCAATGCACAAAGCAAATAATCAACCC
1 GAGGGGAGTGCCCTCAGGTCCATAAGGACCTACCCAATGCACAAAACAAAGAAGCAACCC
3606990 TAAGGGAGTG
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
65 32 0.59
66 22 0.41
ACGTcount: A:0.34, C:0.30, G:0.22, T:0.14
Consensus pattern (66 bp):
GAGGGGAGTGCCCTCAGGTCCATAAGGACCTACCCAATGCACAAAACAAAGAAGCAACCCCCACC
T
Found at i:3607378 original size:25 final size:25
Alignment explanation
Indices: 3607304--3607378 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 25
3607294 CAGAATCAGG
* * * *
3607304 ATTTCAGATTAGATAAATCATTCAGT
1 ATTTCAAATAAGATAAAACAATCA-T
* * *
3607330 A-TTCAAATCAGATCAGACAATCAT
1 ATTTCAAATAAGATAAAACAATCAT
*
3607354 ATTTCAAATAAGATAAAACAGTCAT
1 ATTTCAAATAAGATAAAACAATCAT
3607379 GTGCACATGA
Statistics
Matches: 38, Mismatches: 10, Indels: 3
0.75 0.20 0.06
Matches are distributed among these distances:
24 2 0.05
25 35 0.92
26 1 0.03
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (25 bp):
ATTTCAAATAAGATAAAACAATCAT
Found at i:3617578 original size:30 final size:30
Alignment explanation
Indices: 3617516--3617578 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
3617506 TATCGTTTCA
* * *
3617516 TCAAACGAACTGAAGGACCCGAACTGATTT
1 TCAAACGAACTAAAGGACCCGAACTCAATT
*
3617546 TCAAGCGAACTAAATGGACCCGAA-TCAATT
1 TCAAACGAACTAAA-GGACCCGAACTCAATT
3617576 TCA
1 TCA
3617579 TCCGAGCTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 19 0.68
31 9 0.32
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (30 bp):
TCAAACGAACTAAAGGACCCGAACTCAATT
Found at i:3617724 original size:20 final size:21
Alignment explanation
Indices: 3617686--3617725 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
3617676 AAAAAGTCAA
*
3617686 ATATATTGGCTTTACAAAACC
1 ATATATTGGCTTTAAAAAACC
*
3617707 ATATA-TGGGTTTAAAAAAC
1 ATATATTGGCTTTAAAAAAC
3617726 TGACTCGGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (21 bp):
ATATATTGGCTTTAAAAAACC
Found at i:3618346 original size:14 final size:14
Alignment explanation
Indices: 3618327--3618359 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
3618317 CTATTGTATG
3618327 AAATAAT-ATAACTT
1 AAATAATAATAA-TT
3618341 AAATAATAATAATT
1 AAATAATAATAATT
3618355 AAATA
1 AAATA
3618360 TTAAAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATAATAATAATT
Found at i:3619706 original size:8 final size:8
Alignment explanation
Indices: 3619693--3619752 Score: 52
Period size: 8 Copynumber: 7.4 Consensus size: 8
3619683 TATTTATTTG
3619693 TAATAATA
1 TAATAATA
3619701 TAAT-A-A
1 TAATAATA
*
3619707 TAGTAATA
1 TAATAATA
3619715 TAATATATA
1 TAATA-ATA
3619724 TATATATATA
1 TA-ATA-ATA
*
3619734 TAATTATA
1 TAATAATA
*
3619742 TAATTATA
1 TAATAATA
3619750 TAA
1 TAA
3619753 AAATGAAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
6 4 0.09
7 2 0.04
8 23 0.51
9 7 0.16
10 9 0.20
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (8 bp):
TAATAATA
Found at i:3619931 original size:20 final size:20
Alignment explanation
Indices: 3619908--3619955 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
3619898 CCTACCCTGC
*
3619908 GGTTTTACAGATGACCCGAA
1 GGTTTTACAAATGACCCGAA
* *
3619928 GGTTTTACAAATTACCCGGA
1 GGTTTTACAAATGACCCGAA
*
3619948 GGCTTTAC
1 GGTTTTAC
3619956 TTTTCTAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (20 bp):
GGTTTTACAAATGACCCGAA
Found at i:3620102 original size:119 final size:119
Alignment explanation
Indices: 3619891--3620296 Score: 618
Period size: 119 Copynumber: 3.4 Consensus size: 119
3619881 ATCAAAAATA
* * * *
3619891 AAAACATCCTACCCTGCGGTTTTACAGATGACCC-GAAGGTTTTACAAATTACCCGGAGGCTTTA
1 AAAACATCCTACCCTGAGGTTTTACAGATGACCCAG-AGGTTTTACAAATCACCCAGAGGATTTA
* * *
3619955 CTTTTCTAGAACATTAAATGAGAAACTTTTAAAATCACTATCTCATTTTCATGCG
65 ATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCG
* * *
3620010 AAAACATCCTACCTTGAGGTTTTATAGAAGACCCAGAGGTTTTACAAATCACCCAGAGGATTTAA
1 AAAACATCCTACCCTGAGGTTTTACAGATGACCCAGAGGTTTTACAAATCACCCAGAGGATTTAA
* * * *
3620075 TTTTCTAGAACATTAAATGAGAAACTTTGAAAAACGCTTTCTCGTTTTTATGCG
66 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCG
3620129 AAAACATCCTACCCTGAGGTTTTACAGATGACCCAGAGGTTTTACAAATCA-CCAGGAGGATTTA
1 AAAACATCCTACCCTGAGGTTTTACAGATGACCCAGAGGTTTTACAAATCACCCA-GAGGATTTA
3620193 ATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCG
65 ATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCG
* * **
3620248 AAAATATCCTACCTTGAGGTTTTACAGATGACCTGGAGGTTTTACAAAT
1 AAAACATCCTACCCTGAGGTTTTACAGATGACCCAGAGGTTTTACAAAT
3620297 TCGTGGAAAA
Statistics
Matches: 260, Mismatches: 25, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
118 3 0.01
119 256 0.98
120 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (119 bp):
AAAACATCCTACCCTGAGGTTTTACAGATGACCCAGAGGTTTTACAAATCACCCAGAGGATTTAA
TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCG
Found at i:3620187 original size:20 final size:20
Alignment explanation
Indices: 3620139--3620181 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
3620129 AAAACATCCT
* * *
3620139 ACCCTGAGGTTTTACAGATG
1 ACCCAGAGGTTTTACAAATC
3620159 ACCCAGAGGTTTTACAAATC
1 ACCCAGAGGTTTTACAAATC
3620179 ACC
1 ACC
3620182 AGGAGGATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (20 bp):
ACCCAGAGGTTTTACAAATC
Found at i:3621453 original size:65 final size:65
Alignment explanation
Indices: 3621330--3621460 Score: 190
Period size: 65 Copynumber: 2.0 Consensus size: 65
3621320 TTTATAAAAC
* * * *
3621330 ATTTGACAACACATTCATCATTTCCTGTGGCTCCTGTGGGGATAATGTAGTCACATGGTGGACAA
1 ATTTGACAACACATTCATCATTTCCTGTAGCTCCTATGGGGATAATGTAATCACATGGTAGACAA
* * **
3621395 ATTTGACAACACATTCATCCTTTCCTGTAGCTTCTATGGGGATAATGTAATCGTATGGTAGACAA
1 ATTTGACAACACATTCATCATTTCCTGTAGCTCCTATGGGGATAATGTAATCACATGGTAGACAA
3621460 A
1 A
3621461 ACAACTATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (65 bp):
ATTTGACAACACATTCATCATTTCCTGTAGCTCCTATGGGGATAATGTAATCACATGGTAGACAA
Found at i:3624432 original size:3 final size:3
Alignment explanation
Indices: 3624424--3624476 Score: 65
Period size: 3 Copynumber: 17.7 Consensus size: 3
3624414 GTAAATATTA
*
3624424 AAT AAT AAT AAT AAT AAT AA- AAGT AAT AAT AGT AAT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT
3624468 AAAT AAT AA
1 -AAT AAT AA
3624477 CCCGGACAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
2 4 0.09
3 36 0.82
4 4 0.09
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:3625949 original size:11 final size:11
Alignment explanation
Indices: 3625933--3625957 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3625923 CCGATTTTCA
3625933 TCTTCTTCTTC
1 TCTTCTTCTTC
3625944 TCTTCTTCTTC
1 TCTTCTTCTTC
3625955 TCT
1 TCT
3625958 CTTTATGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (11 bp):
TCTTCTTCTTC
Found at i:3628900 original size:20 final size:21
Alignment explanation
Indices: 3628875--3628916 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
3628865 TTTTAAAAAG
*
3628875 AATAAA-AGTTTAGGTACTAA
1 AATAAATAGTTTAAGTACTAA
3628895 AATAAATAGTTTAAGTACTAA
1 AATAAATAGTTTAAGTACTAA
3628916 A
1 A
3628917 CCAGTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.52, C:0.05, G:0.12, T:0.31
Consensus pattern (21 bp):
AATAAATAGTTTAAGTACTAA
Found at i:3640652 original size:16 final size:16
Alignment explanation
Indices: 3640631--3640663 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
3640621 GTTGAAATCT
3640631 ATAATATTGATAGATG
1 ATAATATTGATAGATG
3640647 ATAATATTGATAGATG
1 ATAATATTGATAGATG
3640663 A
1 A
3640664 GTGTTTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.36
Consensus pattern (16 bp):
ATAATATTGATAGATG
Found at i:3640798 original size:3 final size:3
Alignment explanation
Indices: 3640786--3640831 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
3640776 AATCTGATAC
3640786 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
3640832 TCATTATGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 4 0.10
3 37 0.90
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:3643399 original size:21 final size:22
Alignment explanation
Indices: 3643359--3643400 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
3643349 TGATGTTTCA
3643359 AAAATCAAAATCAATGATTTAG
1 AAAATCAAAATCAATGATTTAG
* *
3643381 AAAATGAAAATC-TTGATTTA
1 AAAATCAAAATCAATGATTTA
3643401 AAAGTTAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (22 bp):
AAAATCAAAATCAATGATTTAG
Found at i:3646645 original size:16 final size:16
Alignment explanation
Indices: 3646624--3646655 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
3646614 ACTGTTCACA
*
3646624 TGAATAGTGAATTTCG
1 TGAATAGTGAAATTCG
3646640 TGAATAGTGAAATTCG
1 TGAATAGTGAAATTCG
3646656 GTCGGCGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.34
Consensus pattern (16 bp):
TGAATAGTGAAATTCG
Found at i:3651236 original size:40 final size:40
Alignment explanation
Indices: 3651181--3651259 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
3651171 AATGTATAAT
* *
3651181 TTCTGATTTACATTAATGGATATAAATATTCATACCATCA
1 TTCTGATTTACATTAATGAATATAAATATCCATACCATCA
3651221 TTCTGATTTACATTAATGAATATAAATATCCATACCATC
1 TTCTGATTTACATTAATGAATATAAATATCCATACCATC
3651260 CCATCAATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.39
Consensus pattern (40 bp):
TTCTGATTTACATTAATGAATATAAATATCCATACCATCA
Found at i:3656066 original size:6 final size:6
Alignment explanation
Indices: 3656055--3656088 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
3656045 ATCACTGCTT
3656055 CTTCTG CTTCTG CTTCTG CTTCTG CTTCTG CTTC
1 CTTCTG CTTCTG CTTCTG CTTCTG CTTCTG CTTC
3656089 GTCCCCTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.35, G:0.15, T:0.50
Consensus pattern (6 bp):
CTTCTG
Found at i:3657590 original size:86 final size:86
Alignment explanation
Indices: 3657478--3657649 Score: 335
Period size: 86 Copynumber: 2.0 Consensus size: 86
3657468 ATGGTGATCC
3657478 ATTGCCTTGGAAGCTAATTCGGTTCGATGAGTGTAATCGCAACAATAGTCGAATGCCCCAGAGGT
1 ATTGCCTTGGAAGCTAATTCGGTTCGATGAGTGTAATCGCAACAATAGTCGAATGCCCCAGAGGT
*
3657543 TAACACGGTTCTCCGAAATCT
66 TAACACGATTCTCCGAAATCT
3657564 ATTGCCTTGGAAGCTAATTCGGTTCGATGAGTGTAATCGCAACAATAGTCGAATGCCCCAGAGGT
1 ATTGCCTTGGAAGCTAATTCGGTTCGATGAGTGTAATCGCAACAATAGTCGAATGCCCCAGAGGT
3657629 TAACACGATTCTCCGAAATCT
66 TAACACGATTCTCCGAAATCT
3657650 CATACAATTA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (86 bp):
ATTGCCTTGGAAGCTAATTCGGTTCGATGAGTGTAATCGCAACAATAGTCGAATGCCCCAGAGGT
TAACACGATTCTCCGAAATCT
Found at i:3659387 original size:6 final size:6
Alignment explanation
Indices: 3659376--3659401 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
3659366 GTATAGAAGA
3659376 CACAAC CACAAC CACAAC CACAAC CA
1 CACAAC CACAAC CACAAC CACAAC CA
3659402 TGAACGAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (6 bp):
CACAAC
Found at i:3660544 original size:15 final size:15
Alignment explanation
Indices: 3660526--3660569 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
3660516 ATAAAATGAG
3660526 TATTTTAAAAAACAT
1 TATTTTAAAAAACAT
* *
3660541 TATTTTAAACAAGAT
1 TATTTTAAAAAACAT
3660556 TAATTTTGAAAAAA
1 T-ATTTT-AAAAAA
3660570 ATAAAATATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 14 0.58
16 5 0.21
17 5 0.21
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (15 bp):
TATTTTAAAAAACAT
Found at i:3671067 original size:20 final size:19
Alignment explanation
Indices: 3671022--3671067 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
3671012 TTGGGATTGA
*
3671022 AGATTTTGAAATTTTTATT
1 AGATTTTGAAATATTTATT
3671041 AGATTTTAGAAATATTT-TT
1 AGATTTT-GAAATATTTATT
3671060 AGACTTTT
1 AGA-TTTT
3671068 TTAAATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.54
Consensus pattern (19 bp):
AGATTTTGAAATATTTATT
Found at i:3672013 original size:166 final size:171
Alignment explanation
Indices: 3671739--3672076 Score: 641
Period size: 166 Copynumber: 2.0 Consensus size: 171
3671729 CTAATCTATT
3671739 ACTTACTAGATTAAGTTAGGGATGAATTGCAACTAAATAGGCAAGTTTGATCATTAAAGTGAAAA
1 ACTTACTAGATTAAGTTAGGGATGAATTGCAACTAAATAGGCAAGTTTGATCATTAAAGTGAAAA
3671804 TTAATTGCAATCGTGGACTAAGTTTCAATAAAAATCTAGTCACTTTTATTTTTT-TTGT-TTA-T
66 TTAATTGCAATCGTGGACTAAGTTTCAATAAAAATCTAGTCACTTTTATTTTTTATTGTCTTATT
3671866 TTGATCACTAAGTC-T-TTTTTTAAATAGTGCAATTGCATG
131 TTGATCACTAAGTCTTATTTTTTAAATAGTGCAATTGCATG
3671905 ACTTACTAGATTAAGTTAGGGATGAATTGCAACTAAATAGGCAAGTTTGATCATTAAAGTGAAAA
1 ACTTACTAGATTAAGTTAGGGATGAATTGCAACTAAATAGGCAAGTTTGATCATTAAAGTGAAAA
3671970 TTAATTGCAATCGTGGACTAAGTTTCAATAAAAATCTAGTCACTTTTATTTTTTATTGTCTTATT
66 TTAATTGCAATCGTGGACTAAGTTTCAATAAAAATCTAGTCACTTTTATTTTTTATTGTCTTATT
3672035 TTGATCACTAAGTCTTATTTTTTAAATAGTGCAATTGCATG
131 TTGATCACTAAGTCTTATTTTTTAAATAGTGCAATTGCATG
3672076 A
1 A
3672077 AGTACAACCC
Statistics
Matches: 167, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
166 119 0.71
167 4 0.02
168 3 0.02
169 15 0.09
170 1 0.01
171 25 0.15
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (171 bp):
ACTTACTAGATTAAGTTAGGGATGAATTGCAACTAAATAGGCAAGTTTGATCATTAAAGTGAAAA
TTAATTGCAATCGTGGACTAAGTTTCAATAAAAATCTAGTCACTTTTATTTTTTATTGTCTTATT
TTGATCACTAAGTCTTATTTTTTAAATAGTGCAATTGCATG
Found at i:3674801 original size:2 final size:2
Alignment explanation
Indices: 3674794--3674858 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
3674784 ATTCATGTTT
3674794 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3674836 TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
3674859 GAAGAAAAGC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3677082 original size:34 final size:34
Alignment explanation
Indices: 3677044--3677142 Score: 113
Period size: 34 Copynumber: 3.1 Consensus size: 34
3677034 CTGATTTCGC
3677044 TTATAGTTTCTGTGAAATTTCAATCTGGGTTTGT
1 TTATAGTTTCTGTGAAATTTCAATCTGGGTTTGT
**
3677078 TTATAGTTTCT-TCG--A-TT---TCTGATTTTGT
1 TTATAGTTTCTGT-GAAATTTCAATCTGGGTTTGT
*
3677106 TTATAGTTTCTGTGAAATTTCAATCTGGGTTTAT
1 TTATAGTTTCTGTGAAATTTCAATCTGGGTTTGT
3677140 TTA
1 TTA
3677143 ATCTCAACTG
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
28 21 0.40
29 1 0.02
30 1 0.02
31 4 0.08
32 1 0.02
33 1 0.02
34 23 0.44
ACGTcount: A:0.20, C:0.09, G:0.17, T:0.54
Consensus pattern (34 bp):
TTATAGTTTCTGTGAAATTTCAATCTGGGTTTGT
Found at i:3677094 original size:62 final size:62
Alignment explanation
Indices: 3677023--3677142 Score: 204
Period size: 62 Copynumber: 1.9 Consensus size: 62
3677013 CTTATTTCAC
*
3677023 TTCTACGATTTCTGATTTCGCTTATAGTTTCTGTGAAATTTCAATCTGGGTTTGTTTATAGT
1 TTCTACGATTTCTGATTTCGCTTATAGTTTCTGTGAAATTTCAATCTGGGTTTATTTATAGT
* * *
3677085 TTCTTCGATTTCTGATTTTGTTTATAGTTTCTGTGAAATTTCAATCTGGGTTTATTTA
1 TTCTACGATTTCTGATTTCGCTTATAGTTTCTGTGAAATTTCAATCTGGGTTTATTTA
3677143 ATCTCAACTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.19, C:0.12, G:0.17, T:0.53
Consensus pattern (62 bp):
TTCTACGATTTCTGATTTCGCTTATAGTTTCTGTGAAATTTCAATCTGGGTTTATTTATAGT
Found at i:3679441 original size:16 final size:18
Alignment explanation
Indices: 3679420--3679460 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
3679410 CTTGCTACTG
3679420 TTTTATTGAAGTT-A-AA
1 TTTTATTGAAGTTGACAA
* *
3679436 TTTTATGGACGTTGACAA
1 TTTTATTGAAGTTGACAA
3679454 TTTTATT
1 TTTTATT
3679461 TTTAGGTTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
16 11 0.55
17 1 0.05
18 8 0.40
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (18 bp):
TTTTATTGAAGTTGACAA
Found at i:3681115 original size:16 final size:17
Alignment explanation
Indices: 3681094--3681125 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
3681084 TCAATTATTA
3681094 ATATTTTT-TAAAATAC
1 ATATTTTTATAAAATAC
3681110 ATATTTTTATAAAATA
1 ATATTTTTATAAAATA
3681126 TAATTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTTTTATAAAATAC
Found at i:3682108 original size:44 final size:44
Alignment explanation
Indices: 3682058--3682275 Score: 328
Period size: 44 Copynumber: 5.0 Consensus size: 44
3682048 TGTTACCGAA
* * *
3682058 ATAAATGAAAATGCATACCGGTGCATTACTGACAGAAAGGTGTC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGTC
* * * *
3682102 ATAAATGATAATGCATAATGGTGTATTATTGGCAGAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGTC
* * *
3682146 ATAAATGAAAATGCATAATGGTGCATTATTGGCAAAAAAGTGTC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGTC
* *
3682190 ATAAATGAAAATGAATAACGATGCATTATTGGCAGAAAGGTGTC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGTC
3682234 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTG
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTG
3682276 CCACTCATGG
Statistics
Matches: 155, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 155 1.00
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (44 bp):
ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGTC
Found at i:3685196 original size:18 final size:20
Alignment explanation
Indices: 3685161--3685204 Score: 74
Period size: 18 Copynumber: 2.3 Consensus size: 20
3685151 TTATTCAAGG
3685161 AGTATCGATACCTAAAGGGT
1 AGTATCGATACCTAAAGGGT
3685181 AGTATCGATA-CT-AAGGGT
1 AGTATCGATACCTAAAGGGT
3685199 AGTATC
1 AGTATC
3685205 CATTATGCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 12 0.50
19 2 0.08
20 10 0.42
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (20 bp):
AGTATCGATACCTAAAGGGT
Found at i:3690006 original size:52 final size:52
Alignment explanation
Indices: 3689949--3690051 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
3689939 ATGCAAGGTT
3689949 ATCATTAGATGGAGATAGTGGTCTATGTGCAGAATTAAAGCTTAAACCAACC
1 ATCATTAGATGGAGATAGTGGTCTATGTGCAGAATTAAAGCTTAAACCAACC
*
3690001 ATCATTAGATGGAGATGGTGGTCTATGTGCAGAATTAAAGCTTAAACCAAC
1 ATCATTAGATGGAGATAGTGGTCTATGTGCAGAATTAAAGCTTAAACCAAC
3690052 ATGGTTGGAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (52 bp):
ATCATTAGATGGAGATAGTGGTCTATGTGCAGAATTAAAGCTTAAACCAACC
Found at i:3696839 original size:14 final size:16
Alignment explanation
Indices: 3696817--3696850 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
3696807 AGATAAATAC
3696817 TTTACTAAAA-ATTAT
1 TTTACTAAAATATTAT
3696832 TTTA-TAAAATATTAT
1 TTTACTAAAATATTAT
3696847 TTTA
1 TTTA
3696851 AAATATGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTACTAAAATATTAT
Found at i:3702818 original size:43 final size:43
Alignment explanation
Indices: 3702791--3703012 Score: 171
Period size: 43 Copynumber: 5.2 Consensus size: 43
3702781 AATTACAAAT
* *
3702791 GCCACTAAATACACAATCAATAGCGGTGATTGTAAAGAAAAAC
1 GCCACTAAATACACAGTCAATAGCGGTGTTTGTAAAGAAAAAC
* * *
3702834 GTCGCTAAATACACAGTCAATAGC-GTCATTTGTAAAGAAAAAC
1 GCCACTAAATACACAGTCAATAGCGGT-GTTTGTAAAGAAAAAC
*** ** *** *
3702877 GCCACTAAATACACAGTCAATAATAGCATTTGTATTTACAAATC
1 GCCACTAAATACACAGTCAATAGCGGTGTTTGTAAAGA-AAAAC
* * * * * *
3702921 -CCGCTAAATAAAAAGTCAATAGC-ATCATTTGTAAAGATAAAC
1 GCCACTAAATACACAGTCAATAGCGGT-GTTTGTAAAGAAAAAC
* * * * *
3702963 GCCGCTAAATACACAATCAATAGCGGCGTTTGTAAAGAGAAAT
1 GCCACTAAATACACAGTCAATAGCGGTGTTTGTAAAGAAAAAC
3703006 GCCACTA
1 GCCACTA
3703013 TATGTCTTGA
Statistics
Matches: 138, Mismatches: 35, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
42 5 0.04
43 128 0.93
44 5 0.04
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCACTAAATACACAGTCAATAGCGGTGTTTGTAAAGAAAAAC
Found at i:3702995 original size:86 final size:86
Alignment explanation
Indices: 3702791--3703000 Score: 251
Period size: 86 Copynumber: 2.4 Consensus size: 86
3702781 AATTACAAAT
* * * * *
3702791 GCCACTAAATACACAATCAATAGCGGTGATTGTAAAGAAAAACGTCGCTAAATACACAGTCAATA
1 GCCACTAAATACACAATCAATAGCGGCGTTTGTAAAGAAAAACGCCGCTAAATAAAAAGTCAATA
*
3702856 GCGTCATTTGTAAAGAAAAAC
66 GCATCATTTGTAAAGAAAAAC
* *** * *** *
3702877 GCCACTAAATACACAGTCAATAATAGCATTTGTATTTACAAATC-CCGCTAAATAAAAAGTCAAT
1 GCCACTAAATACACAATCAATAGCGGCGTTTGTAAAGA-AAAACGCCGCTAAATAAAAAGTCAAT
*
3702941 AGCATCATTTGTAAAGATAAAC
65 AGCATCATTTGTAAAGAAAAAC
*
3702963 GCCGCTAAATACACAATCAATAGCGGCGTTTGTAAAGA
1 GCCACTAAATACACAATCAATAGCGGCGTTTGTAAAGA
3703001 GAAATGCCAC
Statistics
Matches: 98, Mismatches: 25, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
86 94 0.96
87 4 0.04
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (86 bp):
GCCACTAAATACACAATCAATAGCGGCGTTTGTAAAGAAAAACGCCGCTAAATAAAAAGTCAATA
GCATCATTTGTAAAGAAAAAC
Found at i:3704388 original size:30 final size:29
Alignment explanation
Indices: 3704336--3704392 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
3704326 AAAGTTTGGT
3704336 GACCAAAATATAAACTTTGAAAAGATTAGG
1 GACCAAAATATAAACTTTGAAAA-ATTAGG
* *
3704366 GACCAAAATGT-AATTTTGGAAAAATTA
1 GACCAAAATATAAACTTT-GAAAAATTA
3704393 CAAATTGGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.49, C:0.09, G:0.16, T:0.26
Consensus pattern (29 bp):
GACCAAAATATAAACTTTGAAAAATTAGG
Found at i:3706498 original size:22 final size:22
Alignment explanation
Indices: 3706472--3706523 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
3706462 TATAGCAATT
3706472 ACTGTAGCGTATCGATACACGC
1 ACTGTAGCGTATCGATACACGC
*
3706494 ACTGTAGCGTATCGATACATGC
1 ACTGTAGCGTATCGATACACGC
3706516 ACTGTAGC
1 ACTGTAGC
3706524 AGTACTGTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (22 bp):
ACTGTAGCGTATCGATACACGC
Found at i:3706667 original size:22 final size:23
Alignment explanation
Indices: 3706613--3706667 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
3706603 ATCGGTACAG
*
3706613 TCACTGTTCACGGGTACTGTTCA
1 TCACTGTTCACGGGTACTATTCA
*
3706636 TCATTGTTCAC-GGTACTATTCA
1 TCACTGTTCACGGGTACTATTCA
*
3706658 TCACTATTCA
1 TCACTGTTCA
3706668 TAAAATAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (23 bp):
TCACTGTTCACGGGTACTATTCA
Found at i:3713364 original size:57 final size:57
Alignment explanation
Indices: 3713236--3713365 Score: 147
Period size: 57 Copynumber: 2.3 Consensus size: 57
3713226 CAGCAGGCTG
* ** * **
3713236 CATACGGGATA-CACTAAAGGATACCTAGTGTATATGGTGGGTACGACCTTATGTGC
1 CATACGGGATAGTACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGC
* * *
3713292 CATACGAGACT-GTACTTAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
1 CATACGGGA-TAGTACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGC
*
3713349 TATACGGGATAGTACTA
1 CATACGGGATAGTACTA
3713366 CGGTGCTTAT
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
56 9 0.15
57 50 0.85
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (57 bp):
CATACGGGATAGTACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGC
Found at i:3713511 original size:21 final size:20
Alignment explanation
Indices: 3713478--3713516 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
3713468 AATAAACTTA
*
3713478 CAAGTTTATGGAAAGAATGG
1 CAAGTATATGGAAAGAATGG
3713498 CAAGTATATTGGAAAGAAT
1 CAAGTATA-TGGAAAGAAT
3713517 ATTTTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.44, C:0.05, G:0.26, T:0.26
Consensus pattern (20 bp):
CAAGTATATGGAAAGAATGG
Found at i:3719988 original size:3 final size:3
Alignment explanation
Indices: 3719975--3720011 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
3719965 GGGCATGCTC
*
3719975 GAA GTAA GAA GAA GAA AAA GAA GAA GAA GAA GAA GAA
1 GAA G-AA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
3720012 AGCAAGAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:3719997 original size:9 final size:9
Alignment explanation
Indices: 3719983--3720032 Score: 55
Period size: 9 Copynumber: 5.3 Consensus size: 9
3719973 TCGAAGTAAG
3719983 AAGAAGAAA
1 AAGAAGAAA
*
3719992 AAGAAGAAG
1 AAGAAGAAA
3720001 AAGAAGAAGA
1 AAGAAGAA-A
3720011 AAGCAAGAAA
1 AAG-AAGAAA
* *
3720021 AAAAATAAA
1 AAGAAGAAA
3720030 AAG
1 AAG
3720033 TGGGATTGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 23 0.68
10 6 0.18
11 5 0.15
ACGTcount: A:0.74, C:0.02, G:0.22, T:0.02
Consensus pattern (9 bp):
AAGAAGAAA
Found at i:3723224 original size:20 final size:20
Alignment explanation
Indices: 3723201--3723268 Score: 50
Period size: 20 Copynumber: 3.3 Consensus size: 20
3723191 TTGTAAATCC
3723201 TTCGGGTCATCAGTAAGTCT
1 TTCGGGTCATCAGTAAGTCT
* * *
3723221 TTCGAG-CATGATGCTTAAATCT
1 TTCGGGTCATCA-G--TAAGTCT
*
3723243 TTCGGGTCATCTGTAAG-CAT
1 TTCGGGTCATCAGTAAGTC-T
3723263 TTCGGG
1 TTCGGG
3723269 CAAGATGATA
Statistics
Matches: 36, Mismatches: 7, Indels: 10
0.68 0.13 0.19
Matches are distributed among these distances:
19 5 0.14
20 16 0.44
22 12 0.33
23 3 0.08
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (20 bp):
TTCGGGTCATCAGTAAGTCT
Found at i:3723266 original size:42 final size:42
Alignment explanation
Indices: 3723194--3723275 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
3723184 CTTGAATTTG
*
3723194 TAAATCCTTCGGGTCATCAGTAAGTCTTTCGAGCATGATGCT
1 TAAATCCTTCGGGTCATCAGTAAGTCTTTCGAGCAAGATGCT
* * *
3723236 TAAATCTTTCGGGTCATCTGTAAG-CATTTCGGGCAAGATG
1 TAAATCCTTCGGGTCATCAGTAAGTC-TTTCGAGCAAGATG
3723276 ATAAGACCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.03
42 34 0.97
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (42 bp):
TAAATCCTTCGGGTCATCAGTAAGTCTTTCGAGCAAGATGCT
Found at i:3723935 original size:9 final size:9
Alignment explanation
Indices: 3723924--3723998 Score: 64
Period size: 9 Copynumber: 8.2 Consensus size: 9
3723914 TTTTATCCAT
3723924 TTTTTATT-
1 TTTTTATTA
*
3723932 TTTTATTTTA
1 TTTT-TATTA
3723942 TTTTTATTA
1 TTTTTATTA
3723951 TTTTTATTA
1 TTTTTATTA
* *
3723960 TTATAATAATA
1 TT-T-TTATTA
* *
3723971 ATATTATTA
1 TTTTTATTA
3723980 -TTTTATTA
1 TTTTTATTA
3723988 TTTTTATTA
1 TTTTTATTA
3723997 TT
1 TT
3723999 AAATAATAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
8 11 0.21
9 32 0.60
10 5 0.09
11 5 0.09
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTTTATTA
Found at i:3723960 original size:3 final size:3
Alignment explanation
Indices: 3723934--3723999 Score: 57
Period size: 3 Copynumber: 23.0 Consensus size: 3
3723924 TTTTTATTTT
* * * * *
3723934 TTA TT- TTA TTT TTA TTA TTT TTA TTA TTA -TA ATA ATA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
3723980 TT- TTA TTA TTT TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
3724000 AATAATAATA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
2 6 0.11
3 47 0.89
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:3723993 original size:37 final size:37
Alignment explanation
Indices: 3723935--3724014 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 37
3723925 TTTTATTTTT
3723935 TATT-TTATTTTTATTATTTTTATTATTATAATAATAA
1 TATTATTATTTTTATTATTTTTATTATTA-AATAATAA
3723972 TATTATTA-TTTTATTATTTTTATTATTAAATAATAA
1 TATTATTATTTTTATTATTTTTATTATTAAATAATAA
3724008 TAATTAT
1 T-ATTAT
3724015 AAATAAACAT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 9 0.22
37 29 0.71
38 3 0.07
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (37 bp):
TATTATTATTTTTATTATTTTTATTATTAAATAATAA
Found at i:3726045 original size:31 final size:31
Alignment explanation
Indices: 3726007--3726069 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
3725997 TATTTTCTCA
3726007 ATGATGACATGACATTACCTTATGGTGACAT
1 ATGATGACATGACATTACCTTATGGTGACAT
3726038 ATGATGACATGACATTACCTTATGGTGACAT
1 ATGATGACATGACATTACCTTATGGTGACAT
3726069 A
1 A
3726070 CTGAAACCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (31 bp):
ATGATGACATGACATTACCTTATGGTGACAT
Found at i:3731604 original size:30 final size:32
Alignment explanation
Indices: 3731559--3731619 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
3731549 ATAACTACGT
*
3731559 AATAAATTGTTAATTTTTT-AAATTATAATGA
1 AATAAAGTGTTAATTTTTTAAAATTATAATGA
3731590 AATAAAGTG-TAATTTTTTAAAAATTATAAT
1 AATAAAGTGTTAATTTTTT-AAAATTATAAT
3731620 TTTTTTATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 9 0.33
31 8 0.30
32 10 0.37
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.46
Consensus pattern (32 bp):
AATAAAGTGTTAATTTTTTAAAATTATAATGA
Found at i:3735212 original size:23 final size:24
Alignment explanation
Indices: 3735168--3735219 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
3735158 TTTTATATTT
3735168 TTTTATTTCTTTTTATAAATTAATA
1 TTTTATTTCTTTTTAT-AATTAATA
3735193 TTTTATTAT-TTTTTAT-ATTAATA
1 TTTTATT-TCTTTTTATAATTAATA
3735216 TTTT
1 TTTT
3735220 CTTAACTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 11 0.42
25 14 0.54
26 1 0.04
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTTATTTCTTTTTATAATTAATA
Found at i:3735229 original size:25 final size:25
Alignment explanation
Indices: 3735168--3735229 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 25
3735158 TTTTATATTT
*
3735168 TTTTATTTCTTTTTATAAATTAATA
1 TTTTATTACTTTTTATAAATTAATA
*
3735193 TTTTATTA-TTTTT-TATATTAATA
1 TTTTATTACTTTTTATAAATTAATA
*
3735216 TTTTCTTAACTTTT
1 TTTTATT-ACTTTT
3735230 ATTTTTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 15 0.47
24 6 0.19
25 11 0.34
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (25 bp):
TTTTATTACTTTTTATAAATTAATA
Found at i:3741922 original size:16 final size:17
Alignment explanation
Indices: 3741891--3741924 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
3741881 TCTTATTTCA
3741891 TTTATTTTGAATTCATTT
1 TTTATTTT-AATTCATTT
3741909 TTTATTTT-ATTCATTT
1 TTTATTTTAATTCATTT
3741925 AAGTACTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.71
Consensus pattern (17 bp):
TTTATTTTAATTCATTT
Found at i:3745561 original size:60 final size:61
Alignment explanation
Indices: 3745481--3745597 Score: 148
Period size: 60 Copynumber: 1.9 Consensus size: 61
3745471 AATACTTCGC
* * * *
3745481 TTAGGATGAAAACTCGAAAGGGCG-TCCAGAGTCG-AAGAAGAAAAGAAAAAGAAAAAATGT
1 TTAGGATGAAAACCCAAAAGGGCGTTCCA-AATCGAAAAAAGAAAAGAAAAAGAAAAAATGT
* * *
3745541 TTAGGGTGAAAACCCAAAAGGGCGTTCTAAATTGAAAAAAGAAAAGAAAAAGAAAAA
1 TTAGGATGAAAACCCAAAAGGGCGTTCCAAATCGAAAAAAGAAAAGAAAAAGAAAAA
3745598 GAGAAAAAGA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
60 24 0.50
61 24 0.50
ACGTcount: A:0.53, C:0.09, G:0.24, T:0.14
Consensus pattern (61 bp):
TTAGGATGAAAACCCAAAAGGGCGTTCCAAATCGAAAAAAGAAAAGAAAAAGAAAAAATGT
Found at i:3745591 original size:6 final size:6
Alignment explanation
Indices: 3745576--3745623 Score: 62
Period size: 6 Copynumber: 7.7 Consensus size: 6
3745566 TCTAAATTGA
3745576 AAAAAG -AAAAG AAAAAG AAAAAGAG AAAAAG AAAAAAG AAAAAG AAAA
1 AAAAAG AAAAAG AAAAAG -AAAA-AG AAAAAG -AAAAAG AAAAAG AAAA
3745624 TATGGTGAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
5 5 0.13
6 17 0.45
7 14 0.37
8 2 0.05
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:3745621 original size:13 final size:13
Alignment explanation
Indices: 3745582--3745623 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
3745572 TTGAAAAAAG
3745582 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
3745595 AAAGAGAAAAAGAA
1 AAA-AGAAAAAGAA
3745609 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
3745622 AA
1 AA
3745624 TATGGTGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 15 0.54
14 13 0.46
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAGAA
Found at i:3746524 original size:60 final size:61
Alignment explanation
Indices: 3746450--3746685 Score: 242
Period size: 60 Copynumber: 3.7 Consensus size: 61
3746440 CTTACACAAG
* * *
3746450 ATTGGATTTCAACTTCACAATGAAAGATATCCAACTCAAAGACGATCTGGTGAAGCAT-TAC
1 ATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGCCAAT-TGGTGAAGCATATAC
* * * ***
3746511 -TTGGATTTCAACTTCACAATGAAGGATATCCAACTCAAATCCAATTCGGTGAAATTTATAC
1 ATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGCCAATT-GGTGAAGCATATAC
*
3746572 AAGATTGGATTTCAACTTTACAACGAAAGATATCCAACTCAAAGCCAATTTGGTGAAGCAATATA
1 ---ATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGCCAA-TTGGTGAAGC-ATAT-
3746637 ACTC
60 A--C
*
3746641 TAGATTGGATTTCAACTTCACAACGAAGGATATCCAACTCAAAGC
1 ---ATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGC
3746686 TCAACTTCAC
Statistics
Matches: 147, Mismatches: 17, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
59 1 0.01
60 48 0.33
61 3 0.02
65 46 0.31
66 5 0.03
67 1 0.01
69 43 0.29
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (61 bp):
ATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGCCAATTGGTGAAGCATATAC
Found at i:3746606 original size:65 final size:64
Alignment explanation
Indices: 3746445--3746685 Score: 260
Period size: 65 Copynumber: 3.7 Consensus size: 64
3746435 CGCAACTTAC
* * * *
3746445 ACAAGATTGGATTTCAACTTCACAATGAAAGATATCCAACTCAAAGACGA-TCTGGTGAAGCAT-
1 ACAAGATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGCCAATTC-GGTGAA-AATA
3746508 T
64 T
* * * *
3746509 AC----TTGGATTTCAACTTCACAATGAAGGATATCCAACTCAAATCCAATTCGGTGAAATTTAT
1 ACAAGATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGCCAATTCGGTGAAA-ATAT
* *
3746570 ACAAGATTGGATTTCAACTTTACAACGAAAGATATCCAACTCAAAGCCAATTTGGTGAAGCAATA
1 ACAAGATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGCCAATTCGGTGAA--AATA
3746635 T
64 T
* *
3746636 AACTCTAGATTGGATTTCAACTTCACAACGAAGGATATCCAACTCAAAGC
1 -A--CAAGATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGC
3746686 TCAACTTCAC
Statistics
Matches: 150, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
60 47 0.31
61 5 0.03
64 2 0.01
65 48 0.32
66 3 0.02
67 2 0.01
69 43 0.29
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.27
Consensus pattern (64 bp):
ACAAGATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGCCAATTCGGTGAAAATAT
Found at i:3746612 original size:125 final size:130
Alignment explanation
Indices: 3746445--3746683 Score: 353
Period size: 125 Copynumber: 1.8 Consensus size: 130
3746435 CGCAACTTAC
* *
3746445 ACAAGATTGGATTTCAACTTCACAATGAAAGATATCCAACTCAAAGACGATCTGGTGAAGC-AT-
1 ACAAGATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGACAATCTGGTGAAGCAATA
*
3746508 T-A-C-TTGGATTTCAACTTCACAATGAAGGATATCCAACTCAAATCCAATTCGGTGAAATTTAT
66 TAACCATTGGATTTCAACTTCACAACGAAGGATATCCAACTCAAATCCAATTCGGTGAAATTTAT
* * *
3746570 ACAAGATTGGATTTCAACTTTACAACGAAAGATATCCAACTCAAAGCCAATTTGGTGAAGCAATA
1 ACAAGATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGACAATCTGGTGAAGCAATA
3746635 TAACTCTAGATTGGATTTCAACTTCACAACGAAGGATATCCAACTCAAA
66 TAAC-C---ATTGGATTTCAACTTCACAACGAAGGATATCCAACTCAAA
3746684 GCTCAACTTC
Statistics
Matches: 99, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
125 56 0.57
126 2 0.02
127 1 0.01
128 1 0.01
130 1 0.01
134 38 0.38
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.27
Consensus pattern (130 bp):
ACAAGATTGGATTTCAACTTCACAACGAAAGATATCCAACTCAAAGACAATCTGGTGAAGCAATA
TAACCATTGGATTTCAACTTCACAACGAAGGATATCCAACTCAAATCCAATTCGGTGAAATTTAT
Found at i:3747509 original size:3 final size:3
Alignment explanation
Indices: 3747503--3747536 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
3747493 ATCACTGCTT
*
3747503 TTC TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
3747537 ACCACCACCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:3751129 original size:36 final size:36
Alignment explanation
Indices: 3751027--3751134 Score: 105
Period size: 35 Copynumber: 3.1 Consensus size: 36
3751017 GCCTAAGATC
* *
3751027 CATAAGGAATTACCAGC-TAATCGGTA-CTGAACCTA
1 CATAAGGAATTACCAGCTTGATCAG-AGCTGAACCTA
* * * * * *
3751062 CATAAGGAATTGCCA-ATCGATCAGTGTTGAACCTG
1 CATAAGGAATTACCAGCTTGATCAGAGCTGAACCTA
*
3751097 TATAAGGAATTACCAGCTTGATCAGAGCTGAACCTA
1 CATAAGGAATTACCAGCTTGATCAGAGCTGAACCTA
3751133 CA
1 CA
3751135 GAGAATTCAT
Statistics
Matches: 54, Mismatches: 16, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
35 38 0.70
36 16 0.30
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.24
Consensus pattern (36 bp):
CATAAGGAATTACCAGCTTGATCAGAGCTGAACCTA
Found at i:3757583 original size:24 final size:24
Alignment explanation
Indices: 3757556--3757603 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
3757546 TATTCAACCA
3757556 TGCATTTACCAATAACAACATGTT
1 TGCATTTACCAATAACAACATGTT
*
3757580 TGCATTTACCAATACCAACATGTT
1 TGCATTTACCAATAACAACATGTT
3757604 CCATTAAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.33
Consensus pattern (24 bp):
TGCATTTACCAATAACAACATGTT
Found at i:3758668 original size:15 final size:14
Alignment explanation
Indices: 3758634--3758669 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
3758624 TAGCCTAATG
3758634 GCTAAGGCGTGGGC
1 GCTAAGGCGTGGGC
3758648 GACTAAGGCGTGGGC
1 G-CTAAGGCGTGGGC
3758663 AGCTAAG
1 -GCTAAG
3758670 TTAGGTGACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 1 0.05
15 18 0.90
16 1 0.05
ACGTcount: A:0.22, C:0.19, G:0.44, T:0.14
Consensus pattern (14 bp):
GCTAAGGCGTGGGC
Found at i:3759832 original size:55 final size:55
Alignment explanation
Indices: 3759766--3759962 Score: 263
Period size: 55 Copynumber: 3.6 Consensus size: 55
3759756 TGTATGAGTA
* *
3759766 TGTATCGATACACTGAGAAGTGTATCAATACCCTCAAAACATCAAATGCCATTTG
1 TGTATCGATACACTGAGGAGTGTATCGATACCCTCAAAACATCAAATGCCATTTG
*
3759821 TGTATCGATACACTGAGGAGTGTATCGATACCCTTAAAACATCGAAA-GCCATTTG
1 TGTATCGATACACTGAGGAGTGTATCGATACCCTCAAAACATC-AAATGCCATTTG
* * * * * ***
3759876 TATATCGGTACACTGAGGAGTGTATCTATACCCTCAAAATA-CAAGTATTATTTG
1 TGTATCGATACACTGAGGAGTGTATCGATACCCTCAAAACATCAAATGCCATTTG
*
3759930 TGTATCGGTACACTGAGGAGTGTATCGATACCC
1 TGTATCGATACACTGAGGAGTGTATCGATACCC
3759963 CTAAGTATAA
Statistics
Matches: 126, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.02
54 37 0.29
55 84 0.67
56 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (55 bp):
TGTATCGATACACTGAGGAGTGTATCGATACCCTCAAAACATCAAATGCCATTTG
Found at i:3760543 original size:23 final size:23
Alignment explanation
Indices: 3760513--3760610 Score: 119
Period size: 23 Copynumber: 4.3 Consensus size: 23
3760503 CCAGGACAAA
*
3760513 TATGTGGCACTTC-AGTGCAACTC
1 TATGTGGCACTTCGA-TGCAACCC
3760536 TATGTGGCACTTCGATGCAACCC
1 TATGTGGCACTTCGATGCAACCC
* *
3760559 TATGTGGTACTTTGATGCAACCC
1 TATGTGGCACTTCGATGCAACCC
* * *
3760582 TATATGGCACTTCGGTGCAA-AC
1 TATGTGGCACTTCGATGCAACCC
3760604 TATGTGG
1 TATGTGG
3760611 TCCTTTGGGA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
22 7 0.11
23 57 0.88
24 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.31
Consensus pattern (23 bp):
TATGTGGCACTTCGATGCAACCC
Found at i:3760647 original size:22 final size:22
Alignment explanation
Indices: 3760582--3760648 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 22
3760572 GATGCAACCC
* *
3760582 TATATGGCACTTCGGTGCAAAC
1 TATATGGTACTTCGGTGCAAAT
* * *
3760604 TATGTGGTCCTTTGG-G-ATAAT
1 TATATGGTACTTCGGTGCA-AAT
3760625 TATATGGTACTTCGGTGCAAAT
1 TATATGGTACTTCGGTGCAAAT
3760647 TA
1 TA
3760649 CGAGTTGTGG
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
20 1 0.03
21 15 0.44
22 17 0.50
23 1 0.03
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (22 bp):
TATATGGTACTTCGGTGCAAAT
Found at i:3766875 original size:55 final size:55
Alignment explanation
Indices: 3766779--3766969 Score: 292
Period size: 55 Copynumber: 3.5 Consensus size: 55
3766769 GTATATATTA
* * *
3766779 GTACACTGAGAAGTGTATCGATACCCTCAAAACATCGAATGCCATTTTTTTATCG
1 GTACACTGAGGAGTGTATCGATACCCTCAAAATATCGAATGCCATTTGTTTATCG
* * * *
3766834 ATACAGTGAGGAGTGTATCAATACCCTCAAAATATCAAATGCCATTTGTTTATCG
1 GTACACTGAGGAGTGTATCGATACCCTCAAAATATCGAATGCCATTTGTTTATCG
* * *
3766889 GTACACTGAGGAGTGTATCGATACCCTCAAAATATCGAGTGCTATTTGTGTATCG
1 GTACACTGAGGAGTGTATCGATACCCTCAAAATATCGAATGCCATTTGTTTATCG
3766944 GTACACTGAGGAGTGTATCGATACCC
1 GTACACTGAGGAGTGTATCGATACCC
3766970 CCAAGTATAA
Statistics
Matches: 122, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 122 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (55 bp):
GTACACTGAGGAGTGTATCGATACCCTCAAAATATCGAATGCCATTTGTTTATCG
Found at i:3767258 original size:13 final size:13
Alignment explanation
Indices: 3767242--3767267 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3767232 TATTTATTTT
3767242 ATGTTTTATTTAA
1 ATGTTTTATTTAA
3767255 ATGTTTTATTTAA
1 ATGTTTTATTTAA
3767268 TTTCCAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
ATGTTTTATTTAA
Found at i:3767508 original size:21 final size:21
Alignment explanation
Indices: 3767463--3767509 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
3767453 CGAAGGGGTC
* * *
3767463 TATGTGGTCCTTCGAGATAAT
1 TATGTGGTCCTACGAGACAAA
*
3767484 TATGTGGTCCTACGGGACAAA
1 TATGTGGTCCTACGAGACAAA
3767505 TATGT
1 TATGT
3767510 TTTACTTTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (21 bp):
TATGTGGTCCTACGAGACAAA
Found at i:3768657 original size:118 final size:117
Alignment explanation
Indices: 3768445--3768697 Score: 346
Period size: 118 Copynumber: 2.2 Consensus size: 117
3768435 GCTGTTCTAA
**
3768445 CTCCTTATGTGATGGAATAAAGTTAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCT
1 CTCCTTATGTGATGGAATAAAGCCAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCT
* * * *
3768510 CATCGGATGAGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTGATCCAC
66 CATCGGATGAGTTCTTCTCATTATAAACTCTCAACTAGAAATGTTAATCCAC
* *
3768562 CTCCTTCTGTGATGGAATCAAA-CCAAGGTTAAACAAGTTCTTTTTCATTATGAACTTCTTCTCC
1 CTCCTTATGTGATGGAAT-AAAGCCAAGGTTAAACAAGTTC-TTCTCATTATGAACTTCTTCTCC
* * * * *
3768626 CTCTTTGGATGTGTTCTTCTCATTATAAACTCTCAATTAGAAATGTTAATCTAC
64 CTCATCGGATGAGTTCTTCTCATTATAAACTCTCAACTAGAAATGTTAATCCAC
* *
3768680 CTTCTTTTGTGATGGAAT
1 CTCCTTATGTGATGGAAT
3768698 TGAACAAGGT
Statistics
Matches: 119, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
117 33 0.28
118 86 0.72
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (117 bp):
CTCCTTATGTGATGGAATAAAGCCAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCT
CATCGGATGAGTTCTTCTCATTATAAACTCTCAACTAGAAATGTTAATCCAC
Found at i:3768867 original size:321 final size:319
Alignment explanation
Indices: 3768266--3768971 Score: 1063
Period size: 321 Copynumber: 2.2 Consensus size: 319
3768256 GAGACGAGCT
* *
3768266 AAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATGGAATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTTGG-ATGAGTTCTTCTCATTAT
* * *
3768331 GAACTCTCAACTGGAAATGTTGATCCACCTTCTTCTGTGATGGAATCGAACAAAGTGATGATGCT
65 AAACTCTCAACTAGAAATGTTAATCCACCTTCTTCTGTGATGGAATCGAACAAAGTGATGATGCT
* *
3768396 TATCCAACTCCATATGCAATGGATGAGCCAAGTATTGGTGCTGTTCTAACTCCTTATGTGATGGA
130 TATCCAACTCCATATGCAATGGATGAGCCAAATATTGGTGCTGTTCAAACTCCTTATGTGATGGA
* * **
3768461 ATAAAGTTAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTTCTT
195 ATAAAGCTAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTACCTCATCAAATGAGTTCTT
*
3768526 CTCATTATGAACTCTCCACTGGAAATGTTGATCCACCTCCTTCTGTGATGGAATCAAACC
260 CTCATTATGAACTCTCCACTGGAAATGTTGATCCACCTCCTTCTGTAATGGAATCAAACC
* * *
3768586 AAGGTTAAACAAGTTCTTTTTCATTATGAACTTCTTCTCCCTCTTTGGATGTGTTCTTCTCATTA
1 AAGGTTGAACAAGTTC-TTCTCATTATGAACTTCTTCTCCCTC-TTGGATGAGTTCTTCTCATTA
* * * * *
3768651 TAAACTCTCAATTAGAAATGTTAATCTACCTTCTTTTGTGATGGAATTGAACAAGGTGATGATG-
64 TAAACTCTCAACTAGAAATGTTAATCCACCTTCTTCTGTGATGGAATCGAACAAAGTGATGATGC
* * * *
3768715 TTGGTCCAACTCCATATGCGATGGATGAGCCAAATATTGGTGTTGTTCAAACTCTTTATGTGATG
129 TT-ATCCAACTCCATATGCAATGGATGAGCCAAATATTGGTGCTGTTCAAACTCCTTATGTGATG
** * *
3768780 GAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTACCTCTTCAAATGAGTTC
193 GAATAAAGCTAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTACCTCATCAAATGAGTTC
* * *
3768845 TTCTCATTATGAACTCTCCACTGGAAATGTTGATCCACCTTCTTCTGTAATGGAATCAAGCT
258 TTCTCATTATGAACTCTCCACTGGAAATGTTGATCCACCTCCTTCTGTAATGGAATCAAACC
**
3768907 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGACAAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTC-TTGGATGAGTTCTTCTCATTAT
3768972 GAACCCTTCC
Statistics
Matches: 346, Mismatches: 37, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
320 60 0.17
321 283 0.82
322 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (319 bp):
AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTTGGATGAGTTCTTCTCATTATA
AACTCTCAACTAGAAATGTTAATCCACCTTCTTCTGTGATGGAATCGAACAAAGTGATGATGCTT
ATCCAACTCCATATGCAATGGATGAGCCAAATATTGGTGCTGTTCAAACTCCTTATGTGATGGAA
TAAAGCTAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTACCTCATCAAATGAGTTCTTC
TCATTATGAACTCTCCACTGGAAATGTTGATCCACCTCCTTCTGTAATGGAATCAAACC
Done.