Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002890.1 Hibiscus syriacus cultivar Beakdansim tig00005974_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5046466
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 21
Found at i:614757 original size:138 final size:138
Alignment explanation
Indices: 614502--614844 Score: 447
Period size: 138 Copynumber: 2.5 Consensus size: 138
614492 AGTTATGTCA
* * ** * * *
614502 TTCATACATTTTAGTTATGACATTATTTCATGCCTTAATGCAT-TCGTTCATGCATTTTAGTTAT
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAGTGCATCT-GTTCATGCACTTTAATTAT
*
614566 GGAATCCTTTCATGCCTAAGTGCATCCATTCATGCACTTTAATTATGGCATCCTTTCATACCTTA
65 GGAATCATTTCATGCCTAAGTGCATCCATTCATGCACTTTAATTATGGCATCCTTTCATACCTTA
*
614631 TTGCATCCG
130 GTGCATCCG
*
614640 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAGTGCATCTGTTCATGCACATTAATTATG
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAGTGCATCTGTTCATGCACTTTAATTATG
* * * * * * * *
614705 GCATCATTTCATGCCTTAA-TGCATGCATTCATGCATTTTAGTTATTGTATCCTTTCATGCTTTA
66 GAATCATTTCATGCC-TAAGTGCATCCATTCATGCACTTTAATTATGGCATCCTTTCATACCTTA
614769 GTGCATCCG
130 GTGCATCCG
* * * * *
614778 TTCATGCACTTTGGTTATGGCATCCTTTCATGACTTAGTGCATCAGTTCATGCACTTTAATTCTG
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAGTGCATCTGTTCATGCACTTTAATTATG
614843 GA
66 GA
614845 TTCAATTTAG
Statistics
Matches: 178, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
138 174 0.98
139 4 0.02
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (138 bp):
TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAGTGCATCTGTTCATGCACTTTAATTATG
GAATCATTTCATGCCTAAGTGCATCCATTCATGCACTTTAATTATGGCATCCTTTCATACCTTAG
TGCATCCG
Found at i:615382 original size:75 final size:75
Alignment explanation
Indices: 615249--615410 Score: 252
Period size: 75 Copynumber: 2.2 Consensus size: 75
615239 ACTACTACCC
* * * **
615249 TGGTATTGATACTTCTATACTATGGTATCGATACCCCCTTTCAATATCAATATTATTTCTATATT
1 TGGTATCGATACTTCTATACTATGGTACCAATACCCCCTTTCAATATCAATACCATTTCTATATT
* *
615314 TTGTGTTACA
66 CTATGTTACA
*
615324 TGGTATCGATACTTCTATACTATGGTACCAATACCCCCTTTCAATATCGATACCATTTCTATATT
1 TGGTATCGATACTTCTATACTATGGTACCAATACCCCCTTTCAATATCAATACCATTTCTATATT
615389 CTATGTTACA
66 CTATGTTACA
615399 TGGTATCGATAC
1 TGGTATCGATAC
615411 CTTTCTCTCA
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 79 1.00
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (75 bp):
TGGTATCGATACTTCTATACTATGGTACCAATACCCCCTTTCAATATCAATACCATTTCTATATT
CTATGTTACA
Found at i:619535 original size:22 final size:24
Alignment explanation
Indices: 619489--619538 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
619479 GTTACTGGTT
* *
619489 GTTTGTTGGTGATAATTTGGCTTG
1 GTTTATTGGTGATAATTTGGATTG
619513 GTTTATTGGTGAT-A-TTGGATTG
1 GTTTATTGGTGATAATTTGGATTG
619535 GTTT
1 GTTT
619539 TTGATATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 11 0.46
23 1 0.04
24 12 0.50
ACGTcount: A:0.14, C:0.02, G:0.32, T:0.52
Consensus pattern (24 bp):
GTTTATTGGTGATAATTTGGATTG
Found at i:619733 original size:27 final size:27
Alignment explanation
Indices: 619703--619759 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
619693 TCACTAAGTT
*
619703 AACTCGACTGAGTTCACTCACCGAGTC
1 AACTCGACTGAGTCCACTCACCGAGTC
* *
619730 AACTCGGCTGAGTCCACTTACCGAGTC
1 AACTCGACTGAGTCCACTCACCGAGTC
619757 AAC
1 AAC
619760 ACGTCGACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.21
Consensus pattern (27 bp):
AACTCGACTGAGTCCACTCACCGAGTC
Found at i:626448 original size:20 final size:20
Alignment explanation
Indices: 626422--626478 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
626412 ATATTAAGCC
*
626422 TTCGGTATGGATACTCAAT-T
1 TTCGGTATGGAGAC-CAATCT
*
626442 TTTGGTATGGAGACCAATCT
1 TTCGGTATGGAGACCAATCT
626462 TTCGGTATGGAGACCAA
1 TTCGGTATGGAGACCAA
626479 CGATCTCGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (20 bp):
TTCGGTATGGAGACCAATCT
Found at i:629689 original size:16 final size:16
Alignment explanation
Indices: 629668--629699 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
629658 CGCAAGTAAG
*
629668 ATTTGAGCAATTTTAA
1 ATTTGAACAATTTTAA
629684 ATTTGAACAATTTTAA
1 ATTTGAACAATTTTAA
629700 TTTCGAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (16 bp):
ATTTGAACAATTTTAA
Found at i:636324 original size:16 final size:16
Alignment explanation
Indices: 636303--636336 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
636293 AATAAAATTG
636303 TTAATTTACTTTGTAA
1 TTAATTTACTTTGTAA
* *
636319 TTAATTTATTTTTTAA
1 TTAATTTACTTTGTAA
636335 TT
1 TT
636337 TTAATCTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (16 bp):
TTAATTTACTTTGTAA
Found at i:637241 original size:2 final size:2
Alignment explanation
Indices: 637234--637258 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
637224 TATTTAAAGT
637234 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
637259 GCCATTGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:637620 original size:146 final size:146
Alignment explanation
Indices: 637235--637937 Score: 904
Period size: 146 Copynumber: 4.9 Consensus size: 146
637225 ATTTAAAGTT
* * * *
637235 ATATATATATATATATATATATATGCCA-TTGATATACGAATAATTATGAATCATAAAATCTAAC
1 ATATATATATATATATATATAAATGACATTTGATATACAAATAATTATGAATCTTAAAATCTAAC
* * * * *
637299 TCAAATTTAAATCATTATACATAAATCTTAAACTTAATTTTAAACTCCTAATCCTATATCATATG
66 TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAAATG
637364 ATATCAATACACCTCC
131 ATATCAATACACCTCC
*
637380 ATATATATATATATATATATATGTAAATGACATTTTATATACAAATAATTATGAATCTTAAAATC
1 --ATATATATATATATATATA--TAAATGACATTTGATATACAAATAATTATGAATCTTAAAATC
* *
637445 TAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTAGATTA
62 TAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCA
637510 AATGATATCAATACACCTCC
127 AATGATATCAATACACCTCC
* *
637530 ATATATATATATATATATATAAATGTCATTTGATATACAAATAATTATGAATCTTAAAATCTAAT
1 ATATATATATATATATATATAAATGACATTTGATATACAAATAATTATGAATCTTAAAATCTAAC
* * * * ** * *
637595 TTAAATCTAAACAATTATTCGTAAATGTTAAACTTAATTTTAAACCCAAAATCCTATATTAGATG
66 TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAAATG
637660 ATATCAATACA---CC
131 ATATCAATACACCTCC
* * *
637673 -------TATATATATATAT--ATGTCATTTTATATACGAATAATTATGAATCTTAAAATCTAAC
1 ATATATATATATATATATATAAATGACATTTGATATACAAATAATTATGAATCTTAAAATCTAAC
*
637729 TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAGATG
66 TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAAATG
*
637794 ATATCAATACATCTCC
131 ATATCAATACACCTCC
* * * * ** *
637810 ATATATATATATATATATATATAT-AAATGTCAT-T--TGAT-A-TATGGATCTTAAAATCTAAC
1 ATATATATATATATATATATAAATGACATTTGATATACAAATAATTATGAATCTTAAAATCTAAC
* * *
637869 TTAAATCTAAACCATTATTCATAAATCTTAAATTTAATTTTAAACCCCTAATCCTAGATCAAATG
66 TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAAATG
637934 ATAT
131 ATAT
637938 ACACCCCTAA
Statistics
Matches: 497, Mismatches: 44, Indels: 37
0.86 0.08 0.06
Matches are distributed among these distances:
134 109 0.22
136 13 0.03
137 2 0.00
140 84 0.17
141 1 0.00
142 2 0.00
143 2 0.00
144 14 0.03
145 5 0.01
146 113 0.23
147 19 0.04
148 19 0.04
149 7 0.01
150 107 0.22
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.38
Consensus pattern (146 bp):
ATATATATATATATATATATAAATGACATTTGATATACAAATAATTATGAATCTTAAAATCTAAC
TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAAATG
ATATCAATACACCTCC
Found at i:637628 original size:296 final size:295
Alignment explanation
Indices: 637234--639649 Score: 1778
Period size: 298 Copynumber: 8.0 Consensus size: 295
637224 TATTTAAAGT
* *
637234 TATATATATATATATATATATATATGCCA-TTGATATACGAATAATTATGAATCATAAAATCTAA
1 TATATATATATATATATATATA-ATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAA
* * * *
637298 CTCAAATTTAAATCATTATACATAAATCTTAAACTTAATTTTAAACTCCTAATCCTATATCATAT
65 CTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACTCCTAATCCTATATCAGAT
*
637363 GATATCAATACACCTCCATATATATATATATATATATATGTAAATGACATTTTATATACAAATAA
130 GATATCAATACACCTCCA-ATATATATATATATATATATATAAATG-CATTTTATATACAAATAA
637428 TTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAA
193 TTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAA
* *
637493 CCCCTAATCCTAGATTAAATGATATCAATACACCTCCA
258 CCCCTAATCCTAGATCAGATGATATCAATACACCTCCA
* *
637531 TATATATATATATATATATA-AATGTCATTTGATATACAAATAATTATGAATCTTAAAATCTAAT
1 TATATATATATATATATATATAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAAC
* * * * * *
637595 TTAAATCTAAACAATTATTCGTAAATGTTAAACTTAATTTTAAAC-CCAAAATCCTATATTAGAT
66 TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACTCC-TAATCCTATATCAGAT
* *
637659 GATATCAATACA---CC--------TATATATATATATAT--GT-CATTTTATATACGAATAATT
130 GATATCAATACACCTCCAATATATATATATATATATATATAAATGCATTTTATATACAAATAATT
637710 ATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACC
195 ATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACC
* *
637775 CCTAATCCTATATCAGATGATATCAATACATCTCCA
260 CCTAATCCTAGATCAGATGATATCAATACACCTCCA
** * * * *
637811 TATATATATATATATATATAT-AT-AAATGTCAT-T-TG-AT-A-TATGGATCTTAAAATCTAAC
1 TATATATATATATATATATATAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAAC
* * * * *
637869 TTAAATCTAAACCATTATTCATAAATCTTAAATTTAATTTTAAACCCCTAATCCTAGATCAAATG
66 TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACTCCTAATCCTATATCAGATG
* * * * * * * *
637934 ATAT--ACACCCCTAATCCTAGATCAGATGATATACACCCCTAATCCTAGATCAGATG-ATATTA
131 ATATCAATACACC---TCC-A-AT-ATAT-ATATATA----T-AT-ATATAT-AAATGCATTTTA
* * * * ** * * *
637996 -ATACACCTCCATATATATATGTATGTATGTAAATGAC-ATTTTATATACGAATA--ATTATGAA
182 TATACA----AATA-AT-TATGAATCT-T-AAAAT--CTAACTCAAAT-CTAA-ACCATTAT---
* * * * ** * * * * * ** *
638057 TCGTAAAT-TCT-AACTCAAATTTAAATCATTATTCATAAATCTAAAACTTA-AT-TTTAAACC-
232 TCATAAATCT-TAAACTTAATTTTAAACCCCTAATCCTAGATC--AGA-TGATATCAATACACCT
638117 CCA
293 CCA
* * * * * ** *
638120 AATCCTAGATCAGATGATATCA-ATACACT-TCCATATATATATATATATATATATATATATAAA
1 TAT-ATATAT-ATAT-ATAT-ATATA-A-TGT-CAT-T-T-GATATA-CGA-ATA-AT-TATGAA
** *
638183 TGTCATTTGATATACAAATAA-TTATGAATCTTAAA--ATCTAATT--TAAATC-TAAACCATT-
52 --TC--TT-A-A-A-ATCTAACTCA--AATC-TAAACCAT-T-ATTCATAAATCTTAAA-C-TTA
* ** * * * * * ** * ** * * *
638241 ATTCGTAAA-TGTTAAACTTAATTTTAAAACCCATATCCTATATTAGATGATATCAATAAACCTC
102 ATT-TTAAACTCCTAATCCT-A-TATCAGA-TGATAT-C-A-A-TACA-CCT-CCAATATA--TA
* ** *
638305 CATATATATATATATATATATGTCATTTTATATATGAATAATTATAAATCTTAAAATCTAACTCA
155 TATATATATATATATA-A-ATG-CATTTTATATACAAATAATTATGAATCTTAAAATCTAACTCA
638370 AATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTAGATCAGATGATA
217 AATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTAGATCAGATGATA
*
638435 TTAATACACCTCCA
282 TCAATACACCTCCA
* *
638449 TATATATATATATATATATATATATGTAAATGACATTTTATATACGAATAATTATGAATCATAAA
1 TATATATATATATATATATATA-ATG----T--CATTTGATATACGAATAATTATGAATCTTAAA
* * * * * *
638514 TTCTAACTCAAATCTAAACCATTACTCATAAATCTAAAACTTAATTTTAAACCCCAAATCCTAGA
59 ATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACTCCTAATCCTATA
* *
638579 TCAGATGATATCAATACACTTCC-----ATATATATATATATATATAAATGTCATTTGATATACA
124 TCAGATGATATCAATACACCTCCAATATATATATATATATATATATAAATG-CATTTTATATACA
* * * * *
638639 AATAATTATGAATCTTAAAATCTAATTTAAATCTAAACCATTAATCGTAAATGTTAAACTTAATT
188 AATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATT
* ** *
638704 TTAAAACCC-AGATCCTATTTTAGATGATATCAATACACCTCCATATATATATATATATATATAT
253 TTAAACCCCTA-ATCCTAGATCAGATGATATCAATACACCTCC----------------------
638768 A
295 A
* *
638769 TATATATATATATATATATATATATATCATTTTATATACGAATAATTATGAATCTTAAAATCTAA
1 TATATATATATATATATATATA-ATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAA
* * * * *
638834 CTCAAATCTTAATCATTATTCATAAATTTCATAAATCTTAAACTTAATTTTAAACCCCAAATCTT
65 CTCAAATC-T-A--A--A-CCAT-TA-TTCATAAATCTTAAACTTAATTTTAAACTCCTAATCCT
* * *
638899 AAGATCAGATGATATCAAT--A----C-A-A-CT-T-TATATATATATAT--AT-CATTTGATAT
121 -ATATCAGATGATATCAATACACCTCCAATATATATATATATATATATATAAATGCATTTTATAT
*
638950 AGAAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTA
185 ACAAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTA
* * *
639015 ATTTTAAACCCCAAATCCTAGATTAGATGATATTAATACACCTCCATA
250 ATTTTAAACCCCTAATCCTAGATCAGATGATATCAATACACCTCC--A
*
639063 TATATATATATATATATATATATATGTCATTTGATATACGAATAATTATGAATATTAAAATCTAA
1 TATATATATATATATATATATA-ATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAA
*
639128 CTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACTCCTAATCTTATATCAGAT
65 CTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACTCCTAATCCTATATCAGAT
* *
639193 GATATCAATACACCTCC-ATATATATATATATATA-A-AT--GT-CATTTTATATTCAAATAATT
130 GATATCAATACACCTCCAATATATATATATATATATATATAAATGCATTTTATATACAAATAATT
* *
639252 ATGAATCTTAAAATTTAACT-ACATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACC
195 ATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACC
* *
639316 CCAAATCCTAGATCAGATGATATCCATACACCTCCA
260 CCTAATCCTAGATCAGATGATATCAATACACCTCCA
* * *
639352 TATATATATATATATATATAT-ATATAATTTGATATACGAATAATTATGAATCTTGAAATCTAAC
1 TATATATATATATATATATATAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAAC
* * * * *
639416 TCAAATCTAAACGATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATTAGATG
66 TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACTCCTAATCCTATATCAGATG
* * * *
639481 ATATCATTACACCTCCATATATATATATATATATATATATATATATGTAATTTGATATA-AGAAC
131 ATATCAATACACCTCCA-ATATATATATATATATATATATA-A-ATG-CATTTTATATACA-AAT
*
639545 AATTATAAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTA
191 AATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTA
*
639610 GACCCCTAATCCTAGATCAGATGATATCAATACACCTCCA
256 AACCCCTAATCCTAGATCAGATGATATCAATACACCTCCA
639650 CACACACACA
Statistics
Matches: 1690, Mismatches: 243, Indels: 371
0.73 0.11 0.16
Matches are distributed among these distances:
272 3 0.00
274 76 0.04
275 3 0.00
276 2 0.00
278 3 0.00
279 5 0.00
280 138 0.08
282 1 0.00
284 31 0.02
285 36 0.02
286 2 0.00
287 116 0.07
288 1 0.00
289 39 0.02
290 9 0.01
291 78 0.05
292 41 0.02
293 5 0.00
294 82 0.05
295 10 0.01
296 102 0.06
297 53 0.03
298 188 0.11
299 7 0.00
300 16 0.01
302 4 0.00
303 2 0.00
304 7 0.00
305 1 0.00
306 4 0.00
307 11 0.01
308 5 0.00
309 32 0.02
310 17 0.01
311 8 0.00
312 9 0.01
313 5 0.00
314 162 0.10
315 15 0.01
316 25 0.01
317 6 0.00
318 17 0.01
319 4 0.00
320 30 0.02
321 3 0.00
322 4 0.00
323 35 0.02
324 25 0.01
325 4 0.00
326 14 0.01
327 8 0.00
328 27 0.02
329 30 0.02
330 8 0.00
331 13 0.01
332 6 0.00
333 2 0.00
334 7 0.00
335 11 0.01
336 27 0.02
337 17 0.01
338 12 0.01
339 9 0.01
340 3 0.00
341 2 0.00
342 6 0.00
343 3 0.00
344 2 0.00
345 1 0.00
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.37
Consensus pattern (295 bp):
TATATATATATATATATATATAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAAC
TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACTCCTAATCCTATATCAGATG
ATATCAATACACCTCCAATATATATATATATATATATATAAATGCATTTTATATACAAATAATTA
TGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCC
CTAATCCTAGATCAGATGATATCAATACACCTCCA
Found at i:637690 original size:134 final size:135
Alignment explanation
Indices: 637244--637937 Score: 757
Period size: 150 Copynumber: 4.9 Consensus size: 135
637234 TATATATATA
* * * * * *
637244 TATATATATATATATGCCATTGATATACGAATAATTATGAATCATAAAATCTAACTCAAATTTAA
1 TATATATATATATATGTCATTTATATACAAATAATTATGAATCTTAAAATCTAACTTAAATCTAA
* * * *
637309 ATCATTATACATAAATCTTAAACTTAATTTTAAACTCCTAATCCTATATCATATGATATCAATAC
66 ACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAGATGATATCAATAC
*
637374 ACCTCCATATATA
131 A--T-C-----TC
*
637387 TATATATATATATATGTAAATGACATTTTATATACAAATAATTATGAATCTTAAAATCTAACTCA
1 TATATATATATATATG----T--CA-TTTATATACAAATAATTATGAATCTTAAAATCTAACTTA
* * *
637452 AATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTAGATTAAATGATA
59 AATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAGATGATA
*
637517 TCAATACACCTCCATATATA
124 TCAATACA--T-C-----TC
*
637537 TATATATATATATAAATGTCATTTGATATACAAATAATTATGAATCTTAAAATCTAATTTAAATC
1 TATATATATATAT--ATGTCATTT-ATATACAAATAATTATGAATCTTAAAATCTAACTTAAATC
* * * ** *
637602 TAAACAATTATTCGTAAATGTTAAACTTAATTTTAAACCCAAAATCCTATATTAGATGATATCAA
63 TAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAGATGATATCAA
637667 TACA-C-C
128 TACATCTC
* *
637673 TATATATATATATATGTCATTTTATATACGAATAATTATGAATCTTAAAATCTAACTCAAATCTA
1 TATATATATATATATGTCA-TTTATATACAAATAATTATGAATCTTAAAATCTAACTTAAATCTA
637738 AACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAGATGATATCAATA
65 AACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAGATGATATCAATA
637803 CATCTC
130 CATCTC
* * * * *
637809 CATATATATATATATAT-ATATATATA-AATGTCATTTGATATATGGATCTTAAAATCTAACTTA
1 TATATATATATATATGTCATTTATATACAA----A--TAAT-TATGAATCTTAAAATCTAACTTA
* * *
637872 AATCTAAACCATTATTCATAAATCTTAAATTTAATTTTAAACCCCTAATCCTAGATCAAATGATA
59 AATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAGATGATA
637937 T
124 T
637938 ACACCCCTAA
Statistics
Matches: 491, Mismatches: 40, Indels: 43
0.86 0.07 0.07
Matches are distributed among these distances:
133 1 0.00
134 113 0.23
135 5 0.01
136 29 0.06
137 1 0.00
139 3 0.01
140 84 0.17
142 1 0.00
143 16 0.03
145 3 0.01
146 102 0.21
148 1 0.00
149 2 0.00
150 127 0.26
152 3 0.01
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.38
Consensus pattern (135 bp):
TATATATATATATATGTCATTTATATACAAATAATTATGAATCTTAAAATCTAACTTAAATCTAA
ACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAGATGATATCAATAC
ATCTC
Found at i:637751 original size:280 final size:274
Alignment explanation
Indices: 637393--637924 Score: 803
Period size: 280 Copynumber: 1.9 Consensus size: 274
637383 TATATATATA
*
637393 TATATATATGTAAATGACATTTTATATACAAATAATTATGAATCTTAAAATCTAACTCAAATCTA
1 TATATATATATAAATGACATTTTATATACAAATAATTATGAATCTTAAAATCTAACTCAAATCTA
*
637458 AACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTAGATTAAATGATATCAATA
66 AACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTAGATCAAATGATATCAATA
** * *
637523 CACCTCCATATATATATATATATATATAAATGTCATTTGATATACAAATAATTATGAATCTTAAA
131 CACCTCCATATATATATATATATATATAAAT-AAATGTCAT-T--AAAT-A-TATGAATCTTAAA
* * *
637588 ATCTAATTTAAATCTAAACAATTATTCGTAAATGTTAAACTTAATTTTAAACCCAAAATCCTATA
190 ATCTAACTTAAATCTAAACAATTATTCATAAATCTTAAACTTAATTTTAAACCCAAAATCCTATA
637653 TTAGATGATATCAATACACC
255 TTAGATGATATCAATACACC
* * *
637673 TATATATATATATATGTCATTTTATATACGAATAATTATGAATCTTAAAATCTAACTCAAATCTA
1 TATATATATATAAATGACATTTTATATACAAATAATTATGAATCTTAAAATCTAACTCAAATCTA
* *
637738 AACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTATATCAGATGATATCAATA
66 AACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTAGATCAAATGATATCAATA
* * ** *
637803 CATCTCCATATATATATATATATATATATATAAATGTCATTTGATATATGGATCTTAAAATCTAA
131 CACCTCCATATATATATATATATATATAAATAAATGTCATTAAATATATGAATCTTAAAATCTAA
* * **
637868 CTTAAATCTAAACCATTATTCATAAATCTTAAATTTAATTTTAAACCCCTAATCCTA
196 CTTAAATCTAAACAATTATTCATAAATCTTAAACTTAATTTTAAACCCAAAATCCTA
637925 GATCAAATGA
Statistics
Matches: 229, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
274 68 0.30
275 1 0.00
276 2 0.01
278 1 0.00
279 5 0.02
280 152 0.66
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.38
Consensus pattern (274 bp):
TATATATATATAAATGACATTTTATATACAAATAATTATGAATCTTAAAATCTAACTCAAATCTA
AACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTAGATCAAATGATATCAATA
CACCTCCATATATATATATATATATATAAATAAATGTCATTAAATATATGAATCTTAAAATCTAA
CTTAAATCTAAACAATTATTCATAAATCTTAAACTTAATTTTAAACCCAAAATCCTATATTAGAT
GATATCAATACACC
Found at i:637851 original size:2 final size:2
Alignment explanation
Indices: 637810--637834 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
637800 ATACATCTCC
637810 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
637835 AATGTCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:637944 original size:28 final size:28
Alignment explanation
Indices: 637912--637993 Score: 155
Period size: 28 Copynumber: 2.9 Consensus size: 28
637902 TTAATTTTAA
*
637912 ACCCCTAATCCTAGATCAAATGATATAC
1 ACCCCTAATCCTAGATCAGATGATATAC
637940 ACCCCTAATCCTAGATCAGATGATATAC
1 ACCCCTAATCCTAGATCAGATGATATAC
637968 ACCCCTAATCCTAGATCAGATGATAT
1 ACCCCTAATCCTAGATCAGATGATAT
637994 TAATACACCT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.37, C:0.28, G:0.10, T:0.26
Consensus pattern (28 bp):
ACCCCTAATCCTAGATCAGATGATATAC
Found at i:638126 original size:202 final size:196
Alignment explanation
Indices: 637772--638139 Score: 493
Period size: 202 Copynumber: 1.8 Consensus size: 196
637762 TTAATTTTAA
* * *
637772 ACCCCTAATCCTATATCAGATGATATCAATACATCTCCATATATATATATATATATATATATAAA
1 ACCCCTAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATATATATATAAATAAA
* * * * * *
637837 TGTCATTTGATATATGGATCTTAAAATCTAACTTAAATCTAAACCATTATTCATAAATCTTAAAT
66 TGTCATTCGATATATGAATCGTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTAAAAC
*
637902 TTAATTTTAAACCCCTAATCCTAGATCAAATGATATACACCCCTAATCCTAGATCAGATGATATA
131 TTAATTTTAAACCCCAAATCCTAGATCAAATGATATACACCCCTAATCCTAGATCAGATGATATA
637967 C
196 C
* * * * *
637968 ACCCCTAATCCTAGATCAGATGATATTAATACACCTCCATATATATATGTATGTATGTAAATGAC
1 ACCCCTAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATATATATATAAAT-AA
* * * * *
638033 ATTTTATATACGAATAATTATGAATCGTAAATTCTAACTCAAATTTAAATCATTATTCATAAATC
65 ATGTCAT-T-CG-AT-A-TATGAATCGTAAAATCTAACTCAAATCTAAACCATTATTCATAAATC
*
638098 TAAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGATAT
125 TAAAACTTAATTTTAAACCCCAAATCCTAGATCAAATGATAT
638140 CAATACACTT
Statistics
Matches: 145, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
196 55 0.38
197 6 0.04
198 1 0.01
199 1 0.01
200 2 0.01
201 1 0.01
202 79 0.54
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.35
Consensus pattern (196 bp):
ACCCCTAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATATATATATAAATAAA
TGTCATTCGATATATGAATCGTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTAAAAC
TTAATTTTAAACCCCAAATCCTAGATCAAATGATATACACCCCTAATCCTAGATCAGATGATATA
C
Found at i:638159 original size:2 final size:2
Alignment explanation
Indices: 638152--638180 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
638142 ATACACTTCC
638152 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
638181 AATGTCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:638241 original size:154 final size:154
Alignment explanation
Indices: 637968--638939 Score: 1005
Period size: 154 Copynumber: 6.3 Consensus size: 154
637958 GATGATATAC
* * * * *
637968 ACCCCTAATCCTAGATCAGATGATATTAATACACCTCC--------ATATATATATGTATGTATG
1 ACCCCAAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATATATATATATATATA
* * * * * *
638025 TAAATGACATTTTATATACGAATAATTATGAATCGTAAATTCTAACTCAAATTTAAATCATTATT
66 TAAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATT
*
638090 CATAAATCTAAAACTTAATTTTAA
131 CATAAATCTTAAACTTAATTTTAA
*
638114 ACCCCAAATCCTAGATCAGATGATATCAATACACTTCCATATATATATATATATATATATATATA
1 ACCCCAAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATATATATATATATATA
* * *
638179 TAAATGTCATTTGATATACAAATAATTATGAATCTTAAAATCTAATTTAAATCTAAACCATTATT
66 TAAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATT
* *
638244 CGTAAATGTTAAACTTAATTTTAA
131 CATAAATCTTAAACTTAATTTTAA
* * * * *
638268 AACCCATATCCTATATTAGATGATATCAATAAACCTCC----------ATATATATATATATATA
1 ACCCCAAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATATATATATATATATA
* * *
638323 T--ATGTCATTTTATATATGAATAATTATAAATCTTAAAATCTAACTCAAATCTAAACCATTATT
66 TAAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATT
638386 CATAAATCTTAAACTTAATTTTAA
131 CATAAATCTTAAACTTAATTTTAA
* * *
638410 ACCCCTAATCCTAGATCAGATGATATTAATACACCTCCATATATATATATATATATATATATATG
1 ACCCCAAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATATATATATATATATA
* * * * *
638475 TAAATGACATTTTATATACGAATAATTATGAATCATAAATTCTAACTCAAATCTAAACCATTACT
66 TAAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATT
*
638540 CATAAATCTAAAACTTAATTTTAA
131 CATAAATCTTAAACTTAATTTTAA
*
638564 ACCCCAAATCCTAGATCAGATGATATCAATACACTTCC----------ATATATATATATATATA
1 ACCCCAAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATATATATATATATATA
* * * *
638619 TAAATGTCATTTGATATACAAATAATTATGAATCTTAAAATCTAATTTAAATCTAAACCATTAAT
66 TAAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATT
* *
638684 CGTAAATGTTAAACTTAATTTTAA
131 CATAAATCTTAAACTTAATTTTAA
* * ** *
638708 AACCCAGATCCTATTTTAGATGATATCAATACACCTCCATATATATATATATATATATATATATA
1 ACCCCAAATCCTAGATCAGATGATATCAATACACCTCC--------------ATATATATATATA
* *
638773 TATATATATATATATATATATATCATTTTATATACGAATAATTATGAATCTTAAAATCTAACTCA
52 TATATATATATATATA-A-ATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTCA
* *
638838 AATCTTAATCATTATTCATAAATTTCATAAATCTTAAACTTAATTTTAA
115 AATC-T-A--A--A-CCAT-TA-TTCATAAATCTTAAACTTAATTTTAA
* * **
638887 ACCCCAAATCTTAAGATCAGATGATATCAATACAACTTTATATATATATATAT
1 ACCCCAAATCCT-AGATCAGATGATATCAATACACCTCCATATATATATATAT
638940 CATTTGATAT
Statistics
Matches: 683, Mismatches: 87, Indels: 92
0.79 0.10 0.11
Matches are distributed among these distances:
142 109 0.16
144 144 0.21
146 35 0.05
152 17 0.02
154 239 0.35
166 14 0.02
168 19 0.03
169 1 0.00
170 45 0.07
171 1 0.00
172 1 0.00
174 1 0.00
176 1 0.00
177 3 0.00
178 1 0.00
179 32 0.05
180 20 0.03
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.38
Consensus pattern (154 bp):
ACCCCAAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATATATATATATATATA
TAAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATT
CATAAATCTTAAACTTAATTTTAA
Found at i:638492 original size:2 final size:2
Alignment explanation
Indices: 638448--638473 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
638438 ATACACCTCC
638448 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
638474 GTAAATGACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:638630 original size:144 final size:144
Alignment explanation
Indices: 638162--639649 Score: 1397
Period size: 144 Copynumber: 10.0 Consensus size: 144
638152 ATATATATAT
* * *
638162 ATATATATATATATATATAAATGTCATTTGATATACAAATAATTATGAATCTTAAAATCTAATTT
1 ATATATATATATATATATAAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTC
* * * * * *
638227 AAATCTAAACCATTATTCGTAAATGTTAAACTTAATTTTAAAACCCATATCCTATATTAGATGAT
66 AAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGAT
*
638292 ATCAATAAACCTCC
131 ATCAATACACCTCC
* * *
638306 ATATATATATATATATAT--ATGTCATTTTATATATGAATAATTATAAATCTTAAAATCTAACTC
1 ATATATATATATATATATAAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTC
*
638369 AAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCTAATCCTAGATCAGATGAT
66 AAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGAT
*
638434 ATTAATACACCTCC
131 ATCAATACACCTCC
* *
638448 ATATATATATATATATATATATATATGTAAATGACATTTTATATACGAATAATTATGAATCATAA
1 --ATATATATATATATATATA-A-ATG----T--CATTTGATATACGAATAATTATGAATCTTAA
* * *
638513 ATTCTAACTCAAATCTAAACCATTACTCATAAATCTAAAACTTAATTTTAAACCCCAAATCCTAG
56 AATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAG
*
638578 ATCAGATGATATCAATACACTTCC
121 ATCAGATGATATCAATACACCTCC
* * *
638602 ATATATATATATATATATAAATGTCATTTGATATACAAATAATTATGAATCTTAAAATCTAATTT
1 ATATATATATATATATATAAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTC
* * * * * ** *
638667 AAATCTAAACCATTAATCGTAAATGTTAAACTTAATTTTAAAACCCAGATCCTATTTTAGATGAT
66 AAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGAT
638732 ATCAATACACCTCC
131 ATCAATACACCTCC
* * * * * *
638746 ATATATATATATATATATATATAT-ATAT-ATATA-TATATATATATAT-ATATCATTTTATATA
1 ATATATATATATATATATAAATGTCATTTGATATACGA-ATA-AT-TATGA-ATC--TTAAAAT-
* * * * * **
638807 CGAATAA-TTATGAATCTTAAA--ATCTA-AC-TCAAATCTTAATCATT-ATTCATAAATTTCAT
59 C---TAACTCA--AATC-TAAACCAT-TATTCAT-AAATCTTAAAC-TTAATT-TTAAA--CCCC
* * * * *
638866 AAATCTTAAACTTA-AT--T-TTAA-AC-CC-CAA
112 AAATCCTAGA-TCAGATGATATCAATACACCTC-C
* * * * * * *
638894 ATCTTAAGATCAGATGATATCAATACAACT-TTATAT-ATATA-TATATCATTTGATATAGAAAT
1 AT-AT-ATAT-ATAT-ATAT--ATA-AA-TGTCATTTGATATACGA-AT-A-AT--TAT-G-AAT
* *
638956 AATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTA
51 -CTTA-AAATC-T--AA-C----TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTA
* *
639021 AACCCCAAATCCTAGATTAGATGATATTAATACACCTCC
106 AACCCCAAATCCTAGATCAGATGATATCAATACACCTCC
*
639060 ATATATATATATATATATATATATATATGTCATTTGATATACGAATAATTATGAATATTAAAATC
1 ----ATATATATATATATATATA-A-ATGTCATTTGATATACGAATAATTATGAATCTTAAAATC
* * * *
639125 TAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACTCCTAATCTTATATCA
60 TAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCA
639190 GATGATATCAATACACCTCC
125 GATGATATCAATACACCTCC
* * * *
639210 --ATATATATATATATATAAATGTCATTTTATATTCAAATAATTATGAATCTTAAAATTTAACT-
1 ATATATATATATATATATAAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTC
*
639272 ACATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGAT
66 AAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGAT
*
639337 ATCCATACACCTCC
131 ATCAATACACCTCC
* * *
639351 ATATATATATATATATATATATATATAATTTGATATACGAATAATTATGAATCTTGAAATCTAAC
1 ATATATATATATATATATA-A-ATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAAC
* *
639416 TCAAATCTAAACGATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATTAGATG
64 TCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATG
*
639481 ATATCATTACACCTCC
129 ATATCAATACACCTCC
* * * *
639497 ATATATATATATATATATATATATATATATGTAATTTGATATAAGAACAATTATAAATCTTAAAA
1 ------ATATATATATATATATATA-A-ATGTCATTTGATATACGAATAATTATGAATCTTAAAA
* *
639562 TCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAGACCCCTAATCCTAGAT
58 TCTAACTCAAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGAT
639627 CAGATGATATCAATACACCTCC
123 CAGATGATATCAATACACCTCC
639649 A
1 A
639650 CACACACACA
Statistics
Matches: 1129, Mismatches: 127, Indels: 174
0.79 0.09 0.12
Matches are distributed among these distances:
141 74 0.07
142 156 0.14
143 24 0.02
144 186 0.16
145 37 0.03
146 81 0.07
147 2 0.00
148 7 0.01
149 7 0.01
150 102 0.09
151 17 0.02
152 164 0.15
153 9 0.01
154 118 0.10
155 4 0.00
156 15 0.01
157 5 0.00
158 8 0.01
159 9 0.01
160 10 0.01
161 13 0.01
162 7 0.01
163 13 0.01
164 26 0.02
165 11 0.01
166 13 0.01
167 5 0.00
168 3 0.00
169 1 0.00
170 2 0.00
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.38
Consensus pattern (144 bp):
ATATATATATATATATATAAATGTCATTTGATATACGAATAATTATGAATCTTAAAATCTAACTC
AAATCTAAACCATTATTCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGAT
ATCAATACACCTCC
Found at i:638806 original size:2 final size:2
Alignment explanation
Indices: 638746--638795 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
638736 ATACACCTCC
638746 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
638788 AT AT AT AT
1 AT AT AT AT
638796 CATTTTATAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:638809 original size:314 final size:292
Alignment explanation
Indices: 637968--639649 Score: 2039
Period size: 296 Copynumber: 5.6 Consensus size: 292
637958 GATGATATAC
* * * * *
637968 ACCCCTAATCCTAGATCAGATGATATTAATACACCTCCATATATATATGTATGTATGTAAATGAC
1 ACCCCAAATCCTAGATCAGATGATATCAATACACCTCC-TATATATA--TATATATATAAATGTC
* * * * * *
638033 ATTTTATATACGAATAATTATGAATCGTAAATTCTAACTCAAATTTAAATCATTATTCATAAATC
63 ATTTGATATACAAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATC
* *
638098 TAAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCAATACACTTCCATATATATATA
128 TTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCAATACACCTCCATATATATATA
* * * *
638163 TATATATATATATATATAAATGTCATTTGATATACAAATAATTATGAATCTTAAAATCTAATTTA
193 TATATATATATATATAT--A---CATTTGATATACGAATAATTATGAATCATAAAATCTAACTCA
* * *
638228 AATCTAAACCATTATTCGTAAATGTTAAACTTAATTTTAA
253 AATCTAAACCATTACTCATAAATCTTAAACTTAATTTTAA
* * * * * *
638268 AACCCATATCCTATATTAGATGATATCAATAAACCTCC-ATATATATATATATATATATGTCATT
1 ACCCCAAATCCTAGATCAGATGATATCAATACACCTCCTATATATATATATATATAAATGTCATT
* ** *
638332 TTATATATGAATAATTATAAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTA
66 TGATATACAAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTA
* *
638397 AACTTAATTTTAAACCCCTAATCCTAGATCAGATGATATTAATACACCTCCATATATATATATAT
131 AACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATAT
* *
638462 ATATATATATATGTAAATGACATTTTATATACGAATAATTATGAATCATAAATTCTAACTCAAAT
196 ATATATATATA--T--AT-ACATTTGATATACGAATAATTATGAATCATAAAATCTAACTCAAAT
*
638527 CTAAACCATTACTCATAAATCTAAAACTTAATTTTAA
256 CTAAACCATTACTCATAAATCTTAAACTTAATTTTAA
*
638564 ACCCCAAATCCTAGATCAGATGATATCAATACACTTCCATATATATATATATATATAAATGTCAT
1 ACCCCAAATCCTAGATCAGATGATATCAATACACCTCC-TATATATATATATATATAAATGTCAT
* * * * *
638629 TTGATATACAAATAATTATGAATCTTAAAATCTAATTTAAATCTAAACCATTAATCGTAAATGTT
65 TTGATATACAAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTT
* * ** *
638694 AAACTTAATTTTAAAACCCAGATCCTATTTTAGATGATATCAATACACCTCCATATATATATATA
130 AAACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCAATACACCTCC-------------
* *
638759 TATATATATATATATATATATATATATATATATATATCATTTTATATACGAATAATTATGAATCT
182 -------ATATATATATATATATATATATATATATA-CATTTGATATACGAATAATTATGAATCA
* *
638824 TAAAATCTAACTCAAATCTTAATCATTATTCATAAATTTCATAAATCTTAAACTTAATTTTAA
239 TAAAATCTAACTCAAATCTAAACCATTA--C-------TCATAAATCTTAAACTTAATTTTAA
* *
638887 ACCCCAAATCTTAAGATCAGATGATATCAATACA---ACT-T-TATATATATATAT--A--TCAT
1 ACCCCAAATCCT-AGATCAGATGATATCAATACACCTCCTATATATATATATATATAAATGTCAT
*
638943 TTGATATAGAAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTT
65 TTGATATACAAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTT
* *
639008 AAACTTAATTTTAAACCCCAAATCCTAGATTAGATGATATTAATACACCTCCATATATATATATA
130 AAACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATA
*
639073 TATATATATATATATGTCATTTGATATACGAATAATTATGAAT-ATTAAAATCTAACTCAAATCT
195 TATATATATATATAT-ACATTTGATATACGAATAATTATGAATCA-TAAAATCTAACTCAAATCT
*
639137 AAACCATTATTCATAAATCTTAAACTTAATTTTAA
258 AAACCATTACTCATAAATCTTAAACTTAATTTTAA
* * * *
639172 ACTCCTAATCTTATATCAGATGATATCAATACACCTCC-ATATATATATATATATAAATGTCATT
1 ACCCCAAATCCTAGATCAGATGATATCAATACACCTCCTATATATATATATATATAAATGTCATT
* * * *
639236 TTATATTCAAATAATTATGAATCTTAAAATTTAACT-ACATCTAAACCATTATTCATAAATCTTA
66 TGATATACAAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTA
*
639300 AACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCCATACACCTCC--ATATATATATAT
131 AACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATAT
* *
639363 ATATATATATATATA-ATTTGATATACGAATAATTATGAATCTTGAAATCTAACTCAAATCTAAA
196 ATATATATATATATACATTTGATATACGAATAATTATGAATCATAAAATCTAACTCAAATCTAAA
* *
639427 CGATTATTCATAAATCTTAAACTTAATTTTAA
261 CCATTACTCATAAATCTTAAACTTAATTTTAA
* *
639459 ACCCCAAATCCTAGATTAGATGATATCATTACACCTCCATATATATATATATATATATATATATA
1 ACCCCAAATCCTAGATCAGATGATATCAATACACCTCC-------TATATATATATATATATA-A
* * *
639524 TATGTAATTTGATATA-AGAACAATTATAAATCTTAAAATCTAACTCAAATCTAAACCATTATTC
58 -ATGTCATTTGATATACA-AATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTC
* *
639588 ATAAATCTTAAACTTAATTTTAGACCCCTAATCCTAGATCAGATGATATCAATACACCTCCA
121 ATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCAATACACCTCCA
639650 CACACACACA
Statistics
Matches: 1209, Mismatches: 111, Indels: 125
0.84 0.08 0.09
Matches are distributed among these distances:
284 20 0.02
285 35 0.03
287 111 0.09
288 13 0.01
289 26 0.02
290 1 0.00
291 75 0.06
292 37 0.03
294 79 0.07
295 17 0.01
296 252 0.21
297 36 0.03
298 208 0.17
299 1 0.00
300 33 0.03
313 1 0.00
314 164 0.14
316 3 0.00
318 38 0.03
319 1 0.00
320 1 0.00
321 1 0.00
323 35 0.03
324 21 0.02
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.37
Consensus pattern (292 bp):
ACCCCAAATCCTAGATCAGATGATATCAATACACCTCCTATATATATATATATATAAATGTCATT
TGATATACAAATAATTATGAATCTTAAAATCTAACTCAAATCTAAACCATTATTCATAAATCTTA
AACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCAATACACCTCCATATATATATATAT
ATATATATATATATACATTTGATATACGAATAATTATGAATCATAAAATCTAACTCAAATCTAAA
CCATTACTCATAAATCTTAAACTTAATTTTAA
Found at i:639067 original size:2 final size:2
Alignment explanation
Indices: 639060--639087 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
639050 ATACACCTCC
639060 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
639088 GTCATTTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:639358 original size:2 final size:2
Alignment explanation
Indices: 639351--639377 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
639341 ATACACCTCC
639351 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
639378 ATTTGATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:639504 original size:2 final size:2
Alignment explanation
Indices: 639497--639526 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
639487 TTACACCTCC
639497 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
639527 GTAATTTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:639655 original size:2 final size:2
Alignment explanation
Indices: 639648--639675 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
639638 AATACACCTC
639648 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
639676 TATATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:639691 original size:152 final size:153
Alignment explanation
Indices: 639369--639684 Score: 409
Period size: 152 Copynumber: 2.1 Consensus size: 153
639359 ATATATATAT
* * * * *
639369 ATATATATAATTTGATATACGAATAATTATGAATCTTGAAATCTAACTCAAATCTAAACGATTAT
1 ATATATAT-ATTTGATATAAGAACAATTATAAATCTTAAAATCTAACTCAAATCTAAACCATTAT
* * *
639434 TCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATTAGATGATATCATTACACCTCCAT
65 TCATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCAATACACCTCCAC
* * * * * * * * * * * *
639499 ATATATATATATATATATATATAT
130 ACACACACACACACACACACACAC
*
639523 ATATGTA-ATTTGATATAAGAACAATTATAAATCTTAAAATCTAACTCAAATCTAAACCATTATT
1 ATATATATATTTGATATAAGAACAATTATAAATCTTAAAATCTAACTCAAATCTAAACCATTATT
* *
639587 CATAAATCTTAAACTTAATTTTAGACCCCTAATCCTAGATCAGATGATATCAATACACCTCCACA
66 CATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCAATACACCTCCACA
639652 CACACACACACACACACACACAC
131 CACACACACACACACACACACAC
639675 ATATATATAT
1 ATATATATAT
639685 ATATATATAT
Statistics
Matches: 137, Mismatches: 24, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
152 129 0.94
153 2 0.01
154 6 0.04
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (153 bp):
ATATATATATTTGATATAAGAACAATTATAAATCTTAAAATCTAACTCAAATCTAAACCATTATT
CATAAATCTTAAACTTAATTTTAAACCCCAAATCCTAGATCAGATGATATCAATACACCTCCACA
CACACACACACACACACACACAC
Found at i:640010 original size:32 final size:32
Alignment explanation
Indices: 639948--640010 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
639938 CGTGAATTGT
*
639948 CACATCATAACTTTGAGTGATGTTGCACATGC
1 CACATCATAACTTTGAGTGATGTGGCACATGC
* * *
639980 CACATCATTACTTTGGGTGATGTGGTACATG
1 CACATCATAACTTTGAGTGATGTGGCACATG
640011 TCACGCCAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (32 bp):
CACATCATAACTTTGAGTGATGTGGCACATGC
Found at i:641176 original size:14 final size:15
Alignment explanation
Indices: 641157--641187 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
641147 ATTTTTTATC
641157 AATTAAAAAAT-TTT
1 AATTAAAAAATATTT
641171 AATTAAAAAATATTT
1 AATTAAAAAATATTT
641186 AA
1 AA
641188 ATTATAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTAAAAAATATTT
Found at i:644002 original size:35 final size:35
Alignment explanation
Indices: 643947--644023 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
643937 TCTAAACCCT
* * *
643947 AAATTAAAGTATTTTAGAATTTGGGGTTTAAAATA
1 AAATTGAATTATTTTAGAATTTAGGGTTTAAAATA
* *
643982 TAATTGAATTATTTTAGAATTTAGGGTTTAGAATA
1 AAATTGAATTATTTTAGAATTTAGGGTTTAAAATA
644017 AAATTGA
1 AAATTGA
644024 GTACTGTGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.42
Consensus pattern (35 bp):
AAATTGAATTATTTTAGAATTTAGGGTTTAAAATA
Found at i:645393 original size:2 final size:2
Alignment explanation
Indices: 645382--645413 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
645372 AAAATATAAA
645382 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
645414 ATCGGGGCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:651162 original size:90 final size:89
Alignment explanation
Indices: 651009--651185 Score: 309
Period size: 90 Copynumber: 2.0 Consensus size: 89
650999 CCTAACACAC
*
651009 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGATTTTATTATTTCAAATTAATTAAATCTATA
1 CCTTTTATAGCCAAGTTACCCTAATAATATTAGGATTTTATTATTTCAAATTAATTAAATCTATA
* *
651074 TTTAATTAATTGGAATTTAATAAT
66 TTTAATTAATTGAAATTAAATAAT
*
651098 CCTTTTATATCCAAGTTACCCTAATAATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATAATATTA-GGATTTTATTATTTCAAATTAATTAAATCTAT
651163 ATTTAATTAATTGAAATTAAATA
65 ATTTAATTAATTGAAATTAAATA
651186 TTCGGGATTA
Statistics
Matches: 83, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
89 30 0.36
90 53 0.64
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (89 bp):
CCTTTTATAGCCAAGTTACCCTAATAATATTAGGATTTTATTATTTCAAATTAATTAAATCTATA
TTTAATTAATTGAAATTAAATAAT
Found at i:652502 original size:272 final size:268
Alignment explanation
Indices: 652020--652562 Score: 987
Period size: 272 Copynumber: 2.0 Consensus size: 268
652010 CTAGGGATCT
*
652020 TTTAATAATAACAATTATGTCATTATATGGACTTTATTATCTTCCAGTTTATGTTAAACACATAT
1 TTTAATAATAACAATTATGTCATTAAATGGACTTTATTATCTTCCAGTTTATGTTAAACACATAT
* *
652085 ATATAAATGAAAATAATAGCGACAATGCCTTTATTCAATAAAATCGGTAAATAAAAGTATTATTG
66 ATATAAATGAAAATAATAGCGACAATGCCTTTATTCAATAAAATCGGTAAATAAAAATATTATTA
* *
652150 CAATCATCATATGATTGGTCTTTGGGCATACTCTAACATTCTTATTTCAGGAGCACTTGCTGCCT
131 CAATCATCATATGATTGATCTTTGGGCATACTCTAACATTCTTATTTCAGGAACACTTGCTGCCT
652215 TCCTAGGTCCTATAATCAAAGTGCAAGTCTTACCTCACCAAGTGGAGTAGGCGTGCTTGTATCAT
196 TCCTAGGTCCTATAATCAAAGTGCAAGTCTTACCTCACCAAGTGGAGTAGGCGTGCTTGTATCAT
652280 TAGATGTG
261 TAGATGTG
*
652288 TTTAATAATAACAATTATGTCATTAAATGGACTTTATTATCTTTCAGTTTATGTTAAACACATAT
1 TTTAATAATAACAATTATGTCATTAAATGGACTTTATTATCTTCCAGTTTATGTTAAACAC----
652353 ATATATATAAATGAAAATAATAGCGACAATGCCTTTATTCAATAAAATCGGTAAATAAAAATATT
62 ATATATATAAATGAAAATAATAGCGACAATGCCTTTATTCAATAAAATCGGTAAATAAAAATATT
652418 ATTACAATCATCATATGATTGATCTTTGGGCATACTCTAACATTCTTATTTCAGGAACACTTGCT
127 ATTACAATCATCATATGATTGATCTTTGGGCATACTCTAACATTCTTATTTCAGGAACACTTGCT
*
652483 GCCTTCCTAGGTCCTATAATCAAAGTGCAAGTCTTATCTCACCAAGTGGAGTAGGCGTGCTTGTA
192 GCCTTCCTAGGTCCTATAATCAAAGTGCAAGTCTTACCTCACCAAGTGGAGTAGGCGTGCTTGTA
652548 TCATTAGATGTG
257 TCATTAGATGTG
652560 TTT
1 TTT
652563 CGATTGCAAT
Statistics
Matches: 264, Mismatches: 7, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
268 59 0.22
272 205 0.78
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (268 bp):
TTTAATAATAACAATTATGTCATTAAATGGACTTTATTATCTTCCAGTTTATGTTAAACACATAT
ATATAAATGAAAATAATAGCGACAATGCCTTTATTCAATAAAATCGGTAAATAAAAATATTATTA
CAATCATCATATGATTGATCTTTGGGCATACTCTAACATTCTTATTTCAGGAACACTTGCTGCCT
TCCTAGGTCCTATAATCAAAGTGCAAGTCTTACCTCACCAAGTGGAGTAGGCGTGCTTGTATCAT
TAGATGTG
Found at i:655914 original size:2 final size:2
Alignment explanation
Indices: 655907--655948 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
655897 AAATGGCTTG
655907 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
655949 GATTCAATGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:671846 original size:36 final size:36
Alignment explanation
Indices: 671800--671871 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
671790 CAACTTCAAA
*
671800 AAGCTTTTCTTCATTTGAATTTTCCTTCAAACGTTC
1 AAGCTTTTCTTCATTTGAATTTTCCTCCAAACGTTC
* * *
671836 AAGCTTTTCTTTATTTGATTTTTTCTCCAAACGTTC
1 AAGCTTTTCTTCATTTGAATTTTCCTCCAAACGTTC
671872 TCCTTCAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.21, C:0.21, G:0.08, T:0.50
Consensus pattern (36 bp):
AAGCTTTTCTTCATTTGAATTTTCCTCCAAACGTTC
Found at i:673329 original size:22 final size:22
Alignment explanation
Indices: 673301--673343 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
673291 CGGAATTATT
673301 AATATGTTGATGGCT-TTGATGG
1 AATATGTTGATGG-TGTTGATGG
673323 AATATGTTGATGGTGTTGATG
1 AATATGTTGATGGTGTTGATG
673344 ATGAAATGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.23, C:0.02, G:0.33, T:0.42
Consensus pattern (22 bp):
AATATGTTGATGGTGTTGATGG
Found at i:678770 original size:54 final size:54
Alignment explanation
Indices: 678712--679452 Score: 844
Period size: 54 Copynumber: 13.9 Consensus size: 54
678702 TCATTCATAA
* * * * * *
678712 TTCATAAGCTCATTATGAATTATGTGGGTTGTACACATAGTGCCTATACGGTCG
1 TTCATAAACTTATTATGAATTCTGTGGGTTGCACACTTAGTGCCGATACGGTCG
** * * * *
678766 TTCATAAACTTATTATGAATTCCATGGGTTACACACTTAGTGCCAATACGATCA
1 TTCATAAACTTATTATGAATTCTGTGGGTTGCACACTTAGTGCCGATACGGTCG
* * * * *
678820 TTGATAAACATATTATGTATTCTGTGGGTTGCACACTTAGTGGCGATATGGTCG
1 TTCATAAACTTATTATGAATTCTGTGGGTTGCACACTTAGTGCCGATACGGTCG
* *
678874 TTCATAAACTTATTATGAATTCTGTGGGTT----AGTT--T--CGATACGGTCA
1 TTCATAAACTTATTATGAATTCTGTGGGTTGCACACTTAGTGCCGATACGGTCG
*
678920 TTCATAAACTTATTATGAATTATGTGGGTTGCACACTTAGTGCCGATACGGTCG
1 TTCATAAACTTATTATGAATTCTGTGGGTTGCACACTTAGTGCCGATACGGTCG
* *
678974 TTCATAAACTTATTATGAATTCCGTGGGTTGCACACTTAGTGTCGATACGGTCG
1 TTCATAAACTTATTATGAATTCTGTGGGTTGCACACTTAGTGCCGATACGGTCG
* * * * *
679028 TTCATAAACATATTATGAATCCCGTGGGTTGCACACATAGTGTCGATACGGTCG
1 TTCATAAACTTATTATGAATTCTGTGGGTTGCACACTTAGTGCCGATACGGTCG
* * * * *
679082 TTCATAAACATATTATGAATT-TCGTGGGTTGCACACTTGGTGTCGATACAGTCA
1 TTCATAAACTTATTATGAATTCT-GTGGGTTGCACACTTAGTGCCGATACGGTCG
* * * *
679136 TTCATAAATTTATTATGAATTATGTGGGTTGCACACTTAGTGCTGATACGATCG
1 TTCATAAACTTATTATGAATTCTGTGGGTTGCACACTTAGTGCCGATACGGTCG
* * *
679190 TTCATAAACTTATTATGAATT-TCATGGATTACACACTTAGTGCCGATACGGTCG
1 TTCATAAACTTATTATGAATTCT-GTGGGTTGCACACTTAGTGCCGATACGGTCG
* * ** * * * *
679244 TTCATAAACTTATTATAAAGTCCATGGGTTGCAGACTTAGTGTCGATATGGTCA
1 TTCATAAACTTATTATGAATTCTGTGGGTTGCACACTTAGTGCCGATACGGTCG
* * *
679298 TTCATAAACTTATTATGAATT-TCGTGGGTTGCACACTAAGTGCCGATAAGGTCA
1 TTCATAAACTTATTATGAATTCT-GTGGGTTGCACACTTAGTGCCGATACGGTCG
* *
679352 TTCATAAACTTATTATGAATT-TCGTGGGTTGCACACTTTGTGCCGATACGGTTG
1 TTCATAAACTTATTATGAATTCT-GTGGGTTGCACACTTAGTGCCGATACGGTCG
* * *
679406 TTCATAAACATATTATG-ATTTTCGTGGGTT-AACACTTAGTGCCGATA
1 TTCATAAACTTATTATGAATTCT-GTGGGTTGCACACTTAGTGCCGATA
679453 GTACACATAG
Statistics
Matches: 591, Mismatches: 82, Indels: 29
0.84 0.12 0.04
Matches are distributed among these distances:
46 38 0.06
48 1 0.00
50 6 0.01
52 1 0.00
53 19 0.03
54 525 0.89
55 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (54 bp):
TTCATAAACTTATTATGAATTCTGTGGGTTGCACACTTAGTGCCGATACGGTCG
Found at i:679092 original size:27 final size:27
Alignment explanation
Indices: 679011--679093 Score: 64
Period size: 27 Copynumber: 3.1 Consensus size: 27
679001 GTTGCACACT
679011 TAGTGTCGATACGGTCGTTCATAAACA
1 TAGTGTCGATACGGTCGTTCATAAACA
* * * * * *
679038 TATTAT-GAATCCCGTGGGTTGC--ACACA
1 TAGTGTCG-ATACGGT-CGTT-CATAAACA
679065 TAGTGTCGATACGGTCGTTCATAAACA
1 TAGTGTCGATACGGTCGTTCATAAACA
679092 TA
1 TA
679094 TTATGAATTT
Statistics
Matches: 38, Mismatches: 12, Indels: 12
0.61 0.19 0.19
Matches are distributed among these distances:
25 1 0.03
26 4 0.11
27 28 0.74
28 4 0.11
29 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (27 bp):
TAGTGTCGATACGGTCGTTCATAAACA
Found at i:695325 original size:20 final size:20
Alignment explanation
Indices: 695296--695341 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
695286 GAATTAGTTG
*
695296 AAAGTTTTCAAAAATAATTC
1 AAAGTCTTCAAAAATAATTC
695316 AAAGTCTTCAAAAATAATTC
1 AAAGTCTTCAAAAATAATTC
695336 AAAGTC
1 AAAGTC
695342 CATTAAACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (20 bp):
AAAGTCTTCAAAAATAATTC
Found at i:704208 original size:20 final size:20
Alignment explanation
Indices: 704164--704211 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
704154 CATCCAAGCA
* **
704164 TCATTTATTTCCATTTTAAG
1 TCATGTATTTCCATTAAAAG
*
704184 ACATGTATTTCCATTAAAAG
1 TCATGTATTTCCATTAAAAG
704204 TCATGTAT
1 TCATGTAT
704212 ATAGCCGAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (20 bp):
TCATGTATTTCCATTAAAAG
Found at i:704554 original size:14 final size:14
Alignment explanation
Indices: 704535--704587 Score: 90
Period size: 14 Copynumber: 3.9 Consensus size: 14
704525 GATACTATCG
704535 TTCCATCACCATCT
1 TTCCATCACCATCT
704549 TTCCATCACCATCT
1 TTCCATCACCATCT
*
704563 TCCCATCACCATC-
1 TTCCATCACCATCT
704576 TTCCATCACCAT
1 TTCCATCACCAT
704588 TCACACCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
13 11 0.30
14 26 0.70
ACGTcount: A:0.23, C:0.45, G:0.00, T:0.32
Consensus pattern (14 bp):
TTCCATCACCATCT
Found at i:708267 original size:19 final size:20
Alignment explanation
Indices: 708235--708272 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
708225 CATGGAAGAT
708235 GTGGAGAATATTTT-TTGAG
1 GTGGAGAATATTTTGTTGAG
* *
708254 GTGGATAATTTTTTGTTGA
1 GTGGAGAATATTTTGTTGA
708273 TGTGAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (20 bp):
GTGGAGAATATTTTGTTGAG
Found at i:708505 original size:41 final size:41
Alignment explanation
Indices: 708456--708612 Score: 140
Period size: 41 Copynumber: 3.8 Consensus size: 41
708446 AAAATGATAC
708456 TTTAGCGGCGTTTTTAAAAAAACGCCGTAATAGAGTGGTAA
1 TTTAGCGGCGTTTTTAAAAAAACGCCGTAATAGAGTGGTAA
* ** * *
708497 TTTAGCGGCGTTTATAGCTAAAACGCCGCAATAGA-TATGT--
1 TTTAGCGGCGTTTTTA-AAAAAACGCCGTAATAGAGT-GGTAA
* * * *
708537 TTATAGTGGCGCTTTTTCAACAAACGCCATAATAGAGTGGTAA
1 TT-TAGCGGCG-TTTTTAAAAAAACGCCGTAATAGAGTGGTAA
* * * *
708580 TTTAGCGACGTTTTTACACAAACGCCGTGATAG
1 TTTAGCGGCGTTTTTAAAAAAACGCCGTAATAG
708613 TATTGTTTAT
Statistics
Matches: 89, Mismatches: 20, Indels: 14
0.72 0.16 0.11
Matches are distributed among these distances:
40 2 0.02
41 57 0.64
42 28 0.31
43 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTAAAAAAACGCCGTAATAGAGTGGTAA
Found at i:708573 original size:83 final size:81
Alignment explanation
Indices: 708462--708644 Score: 244
Period size: 83 Copynumber: 2.2 Consensus size: 81
708452 ATACTTTAGC
* * * *
708462 GGCGTTTTTAAAAAAACGCCGTAATAGAGTGGTAATTTAGCGGCGTTTATAGCTA-AAACGCCGC
1 GGCGTTTTTCAACAAACGCCATAATAGAGTGGTAATTTAGCGACGTTTATA-C-ACAAACGCCGC
708526 AATAG-ATATGTTTATAGT
64 AATAGTAT-TGTTTATAGT
* **
708544 GGCGCTTTTTCAACAAACGCCATAATAGAGTGGTAATTTAGCGACGTTTTTACACAAACGCCGTG
1 GGCG-TTTTTCAACAAACGCCATAATAGAGTGGTAATTTAGCGACGTTTATACACAAACGCCGCA
708609 ATAGTATTGTTTATAGT
65 ATAGTATTGTTTATAGT
708626 GGCGTTTGTTCAACAAACG
1 GGCGTTT-TTCAACAAACG
708645 ACGCTATAGA
Statistics
Matches: 90, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
81 4 0.04
82 42 0.47
83 44 0.49
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (81 bp):
GGCGTTTTTCAACAAACGCCATAATAGAGTGGTAATTTAGCGACGTTTATACACAAACGCCGCAA
TAGTATTGTTTATAGT
Found at i:708642 original size:41 final size:39
Alignment explanation
Indices: 708517--708644 Score: 116
Period size: 41 Copynumber: 3.1 Consensus size: 39
708507 TTTATAGCTA
*
708517 AAACGCCGCAATAGATATGTTTATAGTGGCGCTTTTTCAAC
1 AAACGCCGTAATAGAT-TGTTTATAGTGGCG-TTTTTCAAC
* * * *
708558 AAACGCCATAATAGAGTGGTAATT-TAGCGACGTTTTT-ACAC
1 AAACGCCGTAATAGA-TTGT--TTATAGTGGCGTTTTTCA-AC
*
708599 AAACGCCGTGATAGTATTGTTTATAGTGGCGTTTGTTCAAC
1 AAACGCCGTAATAG-ATTGTTTATAGTGGCGTTT-TTCAAC
708640 AAACG
1 AAACG
708645 ACGCTATAGA
Statistics
Matches: 69, Mismatches: 10, Indels: 16
0.73 0.11 0.17
Matches are distributed among these distances:
39 2 0.03
40 10 0.14
41 46 0.67
42 9 0.13
43 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (39 bp):
AAACGCCGTAATAGATTGTTTATAGTGGCGTTTTTCAAC
Found at i:708644 original size:82 final size:82
Alignment explanation
Indices: 708462--708644 Score: 246
Period size: 82 Copynumber: 2.2 Consensus size: 82
708452 ATACTTTAGC
* * * *
708462 GGCGTTTTTAAAAAAACGCCGTAATAGAGTGGTAATTTAGCGGCGTTTATAGCTAAAACGCCGCA
1 GGCGTTTTTCAACAAACGCCATAATAGAGTGGTAATTTAGCGACGTTTATAGCTAAAACGCCGCA
708527 ATAGATATGTTTATAGT
66 ATAGATATGTTTATAGT
*
708544 GGCGCTTTTTCAACAAACGCCATAATAGAGTGGTAATTTAGCGACGTTTTTA-C-ACAAACGCCG
1 GGCG-TTTTTCAACAAACGCCATAATAGAGTGGTAATTTAGCGACGTTTATAGCTA-AAACGCCG
**
708607 TGATAG-TATTGTTTATAGT
64 CAATAGATA-TGTTTATAGT
708626 GGCGTTTGTTCAACAAACG
1 GGCGTTT-TTCAACAAACG
708645 ACGCTATAGA
Statistics
Matches: 90, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
81 6 0.07
82 42 0.47
83 42 0.47
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (82 bp):
GGCGTTTTTCAACAAACGCCATAATAGAGTGGTAATTTAGCGACGTTTATAGCTAAAACGCCGCA
ATAGATATGTTTATAGT
Found at i:708937 original size:82 final size:80
Alignment explanation
Indices: 708842--709221 Score: 309
Period size: 82 Copynumber: 4.7 Consensus size: 80
708832 GCAATAGGGC
* * *
708842 TCATCTATAGTGGCGTTATTTTAACAAACACCACAAAAGAGTAGTACTTTAGCGGTTTTTTATAC
1 TCATCTATAGTGGCGTT-TTTCAACAAACGCCACAATAGAGTAGTACTTTAGCGGTTTTTTATAC
*
708907 AAACGCCGCTATAATGT
65 AAACGCAG-TATAATGT
* * * * *
708924 TCATCTAGT-GTGGCATTTTTCAACAAACGCCATAATAGAGTAGTACTTTAGTGGCGTTTTTAAA
1 TCATCTA-TAGTGGCGTTTTTCAACAAACGCCACAATAGAGTAGTACTTTAGCGG-TTTTTTATA
*
708988 TAAACGCAGTA-ATATAGT
64 CAAACGCAGTATA-AT-GT
* * * *
709006 TCATCTATAGTGGCGTTTTTAAACAAACGCCGCAATAGAGTAGT-CATTT-GCTACGCTTTTTAT
1 TCATCTATAGTGGCGTTTTTCAACAAACGCCACAATAGAGTAGTAC-TTTAGC--GGTTTTTTAT
** * **
709069 ACAAATACTGTAATAGGGT
63 ACAAACGCAGT-ATAATGT
* * * *
709088 TCATCTATTGTAGTGCTTTTCAACAAACGCCACAATAGAGTAGTACTTTAGCGGTGTTTTTATAC
1 TCATCTATAGTGGCGTTTTTCAACAAACGCCACAATAGAGTAGTACTTTAGCGGT-TTTTTATAC
* ** * **
709153 AAATGCCACAACAGGGT
65 AAACG-CAGTATAATGT
* * ****
709170 TCATCTATAGTGGCATTTTTCAAAAAACATTGCAATAGAGTAGTACTTTAGC
1 TCATCTATAGTGGCGTTTTTCAACAAACGCCACAATAGAGTAGTACTTTAGC
709222 AGCGTTTATA
Statistics
Matches: 237, Mismatches: 47, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
80 1 0.00
81 40 0.17
82 188 0.79
83 7 0.03
84 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (80 bp):
TCATCTATAGTGGCGTTTTTCAACAAACGCCACAATAGAGTAGTACTTTAGCGGTTTTTTATACA
AACGCAGTATAATGT
Found at i:708978 original size:41 final size:43
Alignment explanation
Indices: 708842--709052 Score: 142
Period size: 41 Copynumber: 5.1 Consensus size: 43
708832 GCAATAGGGC
* * * *
708842 TCATCTATAGTGGCGTTATTTTAACAAACACCACAAAAGAGTAG
1 TCATCTATAGTGGCGTT-TTTAAACAAACGCCATAATAGAGTAG
* * * * *
708886 T-A-CTTTAGCGG-TTTTTTATACAAACGCCGCT-ATA-A-T-G
1 TCATCTATAGTGGCGTTTTTAAACAAACGCC-ATAATAGAGTAG
* *
708923 TTCATCTAGT-GTGGCATTTTTCAACAAACGCCATAATAGAGTAG
1 -TCATCTA-TAGTGGCGTTTTTAAACAAACGCCATAATAGAGTAG
* * *
708967 T-A-CTTTAGTGGCGTTTTTAAATAAACG-CAGTAATATAGT--
1 TCATCTATAGTGGCGTTTTTAAACAAACGCCA-TAATAGAGTAG
**
709006 TCATCTATAGTGGCGTTTTTAAACAAACGCCGCAATAGAGTAG
1 TCATCTATAGTGGCGTTTTTAAACAAACGCCATAATAGAGTAG
709049 TCAT
1 TCAT
709053 TTGCTACGCT
Statistics
Matches: 125, Mismatches: 25, Indels: 35
0.68 0.14 0.19
Matches are distributed among these distances:
37 1 0.01
38 2 0.02
39 3 0.02
40 23 0.18
41 77 0.62
42 10 0.08
43 7 0.06
44 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (43 bp):
TCATCTATAGTGGCGTTTTTAAACAAACGCCATAATAGAGTAG
Found at i:709174 original size:164 final size:162
Alignment explanation
Indices: 708807--709221 Score: 428
Period size: 164 Copynumber: 2.5 Consensus size: 162
708797 AATGGTACAA
* * * * * *
708807 TTAGTGGCGTTTATACACAAATGCCGCAATAGGGCTCATCTATAGTGGCGTTATTTTAACAAACA
1 TTAGCGGCGTTTTTAAACAAATGCCACAATAGGGTTCATCTATAGTGGCGTT-TTTAAACAAACA
* * * * * *
708872 CCACAAAAGAGTAGTACTTTAGCGGTTTTTTATACAAACGCCGCTATAATGTTCATCTAGTGTGG
65 CCGCAATAGAGTAGTACTTTAGCCGCTTTTTATACAAACACCGCTATAAGGTTCATCTAGTGTGG
*
708937 CATTTTTCAACAAACGCCATAATAGAGTAGTACT
130 CA-TTTTCAACAAACGCCACAATAGAGTAGTACT
* * * * ** *
708971 TTAGTGGCGTTTTTAAATAAACG-CAGTAATATAGTTCATCTATAGTGGCGTTTTTAAACAAACG
1 TTAGCGGCGTTTTTAAACAAATGCCA-CAATAGGGTTCATCTATAGTGGCGTTTTTAAACAAACA
* * * *
709035 CCGCAATAGAGTAGT-CATTT-GCTACGCTTTTTATACAAATACTG-TAATAGGGTTCATCTATT
65 CCGCAATAGAGTAGTAC-TTTAGC--CGCTTTTTATACAAACACCGCT-ATAAGGTTCATCTAGT
709097 GTAGTGC-TTTTCAACAAACGCCACAATAGAGTAGTACT
126 GT-G-GCATTTTCAACAAACGCCACAATAGAGTAGTACT
* * * *
709135 TTAGCGGTGTTTTTATACAAATGCCACAACAGGGTTCATCTATAGTGGCATTTTTCAAA-AAACA
1 TTAGCGGCGTTTTTAAACAAATGCCACAATAGGGTTCATCTATAGTGGCGTTTTT-AAACAAACA
**
709199 TTGCAATAGAGTAGTACTTTAGC
65 CCGCAATAGAGTAGTACTTTAGC
709222 AGCGTTTATA
Statistics
Matches: 205, Mismatches: 35, Indels: 21
0.79 0.13 0.08
Matches are distributed among these distances:
162 3 0.01
163 28 0.14
164 163 0.80
165 9 0.04
166 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (162 bp):
TTAGCGGCGTTTTTAAACAAATGCCACAATAGGGTTCATCTATAGTGGCGTTTTTAAACAAACAC
CGCAATAGAGTAGTACTTTAGCCGCTTTTTATACAAACACCGCTATAAGGTTCATCTAGTGTGGC
ATTTTCAACAAACGCCACAATAGAGTAGTACT
Found at i:716963 original size:21 final size:21
Alignment explanation
Indices: 716907--717008 Score: 96
Period size: 21 Copynumber: 4.9 Consensus size: 21
716897 AAAGAAGCAG
* *
716907 CGGCAGCATAGAGACAAGTAA
1 CGGCAGCACAGAGAGAAGTAA
*
716928 CGTCAGCACAGAGAGAAGTAA
1 CGGCAGCACAGAGAGAAGTAA
* * *
716949 CGGCAGCACAAAGAGAAGCAG
1 CGGCAGCACAGAGAGAAGTAA
* * * *
716970 TGGTAGCACAGACAGAAGTAG
1 CGGCAGCACAGAGAGAAGTAA
* *
716991 TGGTAGCACAGAGAGAAG
1 CGGCAGCACAGAGAGAAG
717009 CAGCATATCA
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 68 1.00
ACGTcount: A:0.41, C:0.18, G:0.32, T:0.09
Consensus pattern (21 bp):
CGGCAGCACAGAGAGAAGTAA
Found at i:716978 original size:42 final size:42
Alignment explanation
Indices: 716932--717011 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
716922 AAGTAACGTC
*
716932 AGCACAGAGAGAAGTAACGGCAGCACAAAGAGAAGCAGTGGT
1 AGCACAGACAGAAGTAACGGCAGCACAAAGAGAAGCAGTGGT
** * *
716974 AGCACAGACAGAAGTAGTGGTAGCACAGAGAGAAGCAG
1 AGCACAGACAGAAGTAACGGCAGCACAAAGAGAAGCAG
717012 CATATCAGCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.42, C:0.16, G:0.34, T:0.07
Consensus pattern (42 bp):
AGCACAGACAGAAGTAACGGCAGCACAAAGAGAAGCAGTGGT
Found at i:717577 original size:85 final size:85
Alignment explanation
Indices: 717434--717591 Score: 228
Period size: 85 Copynumber: 1.9 Consensus size: 85
717424 AACAACGCCA
*
717434 CAAAACATCAATACCTACTGCGACGTTTGTGAGAAAAACGCCACAAAACAGCAAAACCTACTACG
1 CAAAACATCAACACCTACTGCGACGTTTGTGAGAAAAACGCCACAAAACAGCAAAACCTACTACG
*
717499 GCGTTTGTGGGAAAACGTCG
66 ACGTTTGTGGGAAAACGTCG
* * * * * *
717519 CAAAACATGAACACCTATTGCGGA-GTTTGTGAGAAAAACGCCGCAAAACATCATAACCTATTAC
1 CAAAACATCAACACCTACTGC-GACGTTTGTGAGAAAAACGCCACAAAACAGCAAAACCTACTAC
717583 GACGTTTGT
65 GACGTTTGT
717592 CTAAAAAATG
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
85 62 0.97
86 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.20
Consensus pattern (85 bp):
CAAAACATCAACACCTACTGCGACGTTTGTGAGAAAAACGCCACAAAACAGCAAAACCTACTACG
ACGTTTGTGGGAAAACGTCG
Found at i:717599 original size:43 final size:42
Alignment explanation
Indices: 717418--717667 Score: 175
Period size: 43 Copynumber: 5.9 Consensus size: 42
717408 TACCGGTGTT
* * * *
717418 TTTG-GAAACAACGCCACAAAACATCAATACCTACTGCGACG
1 TTTGTGAAAAAACGCCACAAAACATCAACACCTATTACGACG
* * * *
717459 TTTGTGAGAAAAACGCCACAAAACAGCAAAACCTACTACGGCG
1 TTTGTGA-AAAAACGCCACAAAACATCAACACCTATTACGACG
** * * * *
717502 TTTGTGGGAAAACGTCGCAAAACATGAACACCTATTGCGGA-G
1 TTTGTGAAAAAACGCCACAAAACATCAACACCTATTAC-GACG
*
717544 TTTGTGAGAAAAACGCCGCAAAACATCATA-ACCTATTACGACG
1 TTTGTGA-AAAAACGCCACAAAACATCA-ACACCTATTACGACG
* * * * * *
717587 TTTGTCTAAAAAATGCTACTAAAACCCTAAAC-CCTATTACGACA
1 TTTGT-GAAAAAACGCCAC-AAAA-CATCAACACCTATTACGACG
* * * *
717631 TTTGTCTAAAAAACGCCGCTAAATATCAACACCTATT
1 TTTGT-GAAAAAACGCCACAAAACATCAACACCTATT
717668 GCGGTGTTTT
Statistics
Matches: 164, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
41 4 0.02
42 38 0.23
43 85 0.52
44 34 0.21
45 3 0.02
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (42 bp):
TTTGTGAAAAAACGCCACAAAACATCAACACCTATTACGACG
Found at i:717688 original size:43 final size:42
Alignment explanation
Indices: 717641--717788 Score: 199
Period size: 43 Copynumber: 3.5 Consensus size: 42
717631 TTTGTCTAAA
*
717641 AAACGCCGCTAAATATCAACACCTATTGCGGTGTTTTTATGAC
1 AAACGCCGCTAAATATCAACACCTATTACGGTGTTTTTAT-AC
* *
717684 AAACGCTGCTAAATATCAACACCTATTACGGTGTTTTTCATAA
1 AAACGCCGCTAAATATCAACACCTATTACGGTGTTTTT-ATAC
* * *
717727 AAATGCCGCTAAATATCAACACCTATTAC-GTCGTTTGTCACAC
1 AAACGCCGCTAAATATCAACACCTATTACGGT-GTTT-TTATAC
717770 AAACGCCGCTAAATATCAA
1 AAACGCCGCTAAATATCAA
717789 TACATATTGC
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
42 2 0.02
43 88 0.95
44 3 0.03
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.28
Consensus pattern (42 bp):
AAACGCCGCTAAATATCAACACCTATTACGGTGTTTTTATAC
Found at i:717708 original size:130 final size:129
Alignment explanation
Indices: 717510--717800 Score: 288
Period size: 130 Copynumber: 2.2 Consensus size: 129
717500 CGTTTGTGGG
* * * *
717510 AAAACGTCGCAAAACATGAACACCTATTGCGGAGTTTGTGAGAAAAACGCCGCAAAACATCATAA
1 AAAACGCCGCTAAATATCAACACCTATTGCGGAGTTTGTGAGAAAAACGCCGCAAAACATCATAA
*
717575 CCTATTACGACGTTTGTC-TAAAAAATGCTACTAAA-ACCCTAAAC-CCTATTACGACATTTGTC
66 CCTATTACGACGTTTGTCAT-AAAAATGCCACTAAATA---TAAACACCTATTACGACATTTGTC
717637 TA-A
127 -ACA
* * * * * *
717640 AAAACGCCGCTAAATATCAACACCTATTGCGGTGTTT-TTATGACAAACGCTGCTAAATATCA-A
1 AAAACGCCGCTAAATATCAACACCTATTGCGGAGTTTGTGA-GAAAAACGCCGCAAAACATCATA
** * * * * *
717703 CACCTATTACGGTGTTTTTCATAAAAATGCCGCTAAATATCAACACCTATTACGTCGTTTGTCAC
65 -ACCTATTACGACGTTTGTCATAAAAATGCCACTAAATATAAACACCTATTACGACATTTGTCAC
717768 A
129 A
* * *
717769 CAAACGCCGCTAAATATCAATACATATTGCGG
1 AAAACGCCGCTAAATATCAACACCTATTGCGG
717801 CATTTTTTGT
Statistics
Matches: 134, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
128 5 0.04
129 49 0.37
130 78 0.58
131 2 0.01
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.26
Consensus pattern (129 bp):
AAAACGCCGCTAAATATCAACACCTATTGCGGAGTTTGTGAGAAAAACGCCGCAAAACATCATAA
CCTATTACGACGTTTGTCATAAAAATGCCACTAAATATAAACACCTATTACGACATTTGTCACA
Found at i:717807 original size:86 final size:86
Alignment explanation
Indices: 717621--717807 Score: 218
Period size: 86 Copynumber: 2.2 Consensus size: 86
717611 CCCTAAACCC
* * * * *
717621 TATTACGACATTTGTC-TAAAAAACGCCGCTAAATATCAACACCTATTGCGGTGTTTTTATGACA
1 TATTACGGCATTTTTCAT-AAAAACGCCGCTAAATATCAACACCTATTACGGTGTTTTCATCACA
* *
717685 AACGCTGCTAAATATCAACACC
65 AACGCCGCTAAATATCAACACA
** *
717707 TATTACGGTGTTTTTCATAAAAATGCCGCTAAATATCAACACCTATTAC-GTCGTTTGTCA-CAC
1 TATTACGGCATTTTTCATAAAAACGCCGCTAAATATCAACACCTATTACGGT-GTTT-TCATCAC
*
717770 AAACGCCGCTAAATATCAATACA
64 AAACGCCGCTAAATATCAACACA
*
717793 TATTGCGGCATTTTT
1 TATTACGGCATTTTT
717808 TGTTAAAAAA
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
85 2 0.02
86 79 0.94
87 3 0.04
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32
Consensus pattern (86 bp):
TATTACGGCATTTTTCATAAAAACGCCGCTAAATATCAACACCTATTACGGTGTTTTCATCACAA
ACGCCGCTAAATATCAACACA
Found at i:721814 original size:40 final size:40
Alignment explanation
Indices: 721759--721838 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
721749 GAATATAATA
*
721759 CTTTTATAGAGTTTGACATGTGACAAGATTGAACCCTTGT
1 CTTTTATAGAGTTTGACAAGTGACAAGATTGAACCCTTGT
**
721799 CTTTTATAGCTTTTGACAAGTGACAAGATTGAACCCTTGT
1 CTTTTATAGAGTTTGACAAGTGACAAGATTGAACCCTTGT
721839 AAAATAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (40 bp):
CTTTTATAGAGTTTGACAAGTGACAAGATTGAACCCTTGT
Found at i:724710 original size:149 final size:150
Alignment explanation
Indices: 724435--724800 Score: 445
Period size: 149 Copynumber: 2.5 Consensus size: 150
724425 TAAGAGAAGG
* * * * * *
724435 AGTAATGTCATCCCCAACCTGACTTTCTCATGCAAAGGAGTCAGTCTTTCAGTAATATTATC-TC
1 AGTAATGTTATCCTCAACCTGACTTTCTCATGTAAAAGAGTCAATCTTTCAGTAATGTTATCTTC
** * * * * *
724499 AAACTGACTTTCTCGTGTAAATGATTCAAACTTTTCGTAATGTTATCTTAAACCTGACTTTCTCG
66 AAACTGACTTTCTCGTGTAAATGAACCAAACTTTTAGTAATGATATCTTAAACCTAAATTTCTCA
* *
724564 TGTAGAGTAGTCAATCTTTT
131 TGTAGAGGAGTCAATCATTT
* *
724584 AGTAATGTTATCCTCAAACTGACTTTCTCATGTAAAAGAGTCAATCATTCAGTAATGTTATCTTC
1 AGTAATGTTATCCTCAACCTGACTTTCTCATGTAAAAGAGTCAATCTTTCAGTAATGTTATCTTC
* *
724649 AACCTGACTTTCTCGTGTAAAAT-AACCATA-TTTTAGTAATGATATCTTCAAA-CTAAATTTCT
66 AAACTGACTTTCTCGTGT-AAATGAACCAAACTTTTAGTAATGATATCTT-AAACCTAAATTTCT
724711 CATGTAGAGGAGTCAATCATTT
129 CATGTAGAGGAGTCAATCATTT
* ** * * *
724733 AGTAATGTTATCTTCAATCCT-ACTTTCTTGTGTATATGAGTCAATCTTTTAGTAATGTTATCTT
1 AGTAATGTTATCCTCAA-CCTGACTTTCTCATGTAAAAGAGTCAATCTTTCAGTAATGTTATCTT
724797 CAAA
65 CAAA
724801 GTCAATCATT
Statistics
Matches: 185, Mismatches: 28, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
149 153 0.83
150 28 0.15
151 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (150 bp):
AGTAATGTTATCCTCAACCTGACTTTCTCATGTAAAAGAGTCAATCTTTCAGTAATGTTATCTTC
AAACTGACTTTCTCGTGTAAATGAACCAAACTTTTAGTAATGATATCTTAAACCTAAATTTCTCA
TGTAGAGGAGTCAATCATTT
Found at i:724724 original size:99 final size:100
Alignment explanation
Indices: 724535--724800 Score: 322
Period size: 99 Copynumber: 2.7 Consensus size: 100
724525 CAAACTTTTC
* * * * * *
724535 GTAATGTTATCTTAAACCTGACTTTCTCGTGTAGAGTAGTCAATCTTTTAGTAATGTTATCCTCA
1 GTAATGTTATCTTCAACCTGACTTTCTCGTGTAAAATAGACAATATTTTAGTAATGATATCCTCA
* *
724600 AACTGACTTTCTCATGTAAAAGAGTCAATCATTCA
66 AACTAAATTTCTCATGTAAAAGAGTCAATCATTCA
* *
724635 GTAATGTTATCTTCAACCTGACTTTCTCGTGTAAAATA-ACCATATTTTAGTAATGATATCTTCA
1 GTAATGTTATCTTCAACCTGACTTTCTCGTGTAAAATAGACAATATTTTAGTAATGATATCCTCA
* * *
724699 AACTAAATTTCTCATGTAGAGGAGTCAATCATTTA
66 AACTAAATTTCTCATGTAAAAGAGTCAATCATTCA
* * * * * *
724734 GTAATGTTATCTTCAATCCT-ACTTTCTTGTGT-ATATGAGTCAATCTTTTAGTAATGTTATCTT
1 GTAATGTTATCTTCAA-CCTGACTTTCTCGTGTAAAAT-AGACAATATTTTAGTAATGATATCCT
724797 CAAA
64 CAAA
724801 GTCAATCATT
Statistics
Matches: 144, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
98 3 0.02
99 79 0.55
100 62 0.43
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (100 bp):
GTAATGTTATCTTCAACCTGACTTTCTCGTGTAAAATAGACAATATTTTAGTAATGATATCCTCA
AACTAAATTTCTCATGTAAAAGAGTCAATCATTCA
Found at i:724797 original size:50 final size:50
Alignment explanation
Indices: 724435--724800 Score: 357
Period size: 50 Copynumber: 7.4 Consensus size: 50
724425 TAAGAGAAGG
* ** * * * * * *
724435 AGTAATGTCATCCCCAACCTGACTTTCTCATGCAAAGGAGTCAGTCTTTC
1 AGTAATGTTATCTTCAAACTGACTTTCTCGTGTAAATGAGTCAATCTTTT
* * *
724485 AGTAATATTATC-TCAAACTGACTTTCTCGTGTAAATGATTCAAACTTTT
1 AGTAATGTTATCTTCAAACTGACTTTCTCGTGTAAATGAGTCAATCTTTT
* *
724534 CGTAATGTTATCTT-AAACCTGACTTTCTCGTGTAGA-GTAGTCAATCTTTT
1 AGTAATGTTATCTTCAAA-CTGACTTTCTCGTGTAAATG-AGTCAATCTTTT
* * * * *
724584 AGTAATGTTATCCTCAAACTGACTTTCTCATGTAAAAGAGTCAATCATTC
1 AGTAATGTTATCTTCAAACTGACTTTCTCGTGTAAATGAGTCAATCTTTT
* * * *
724634 AGTAATGTTATCTTCAACCTGACTTTCTCGTGTAAAAT-A-ACCATATTTT
1 AGTAATGTTATCTTCAAACTGACTTTCTCGTGT-AAATGAGTCAATCTTTT
* * * * * * *
724683 AGTAATGATATCTTCAAACTAAATTTCTCATGTAGAGGAGTCAATCATTT
1 AGTAATGTTATCTTCAAACTGACTTTCTCGTGTAAATGAGTCAATCTTTT
* * *
724733 AGTAATGTTATCTTCAATCCT-ACTTTCTTGTGTATATGAGTCAATCTTTT
1 AGTAATGTTATCTTCAA-ACTGACTTTCTCGTGTAAATGAGTCAATCTTTT
724783 AGTAATGTTATCTTCAAA
1 AGTAATGTTATCTTCAAA
724801 GTCAATCATT
Statistics
Matches: 256, Mismatches: 51, Indels: 19
0.79 0.16 0.06
Matches are distributed among these distances:
48 2 0.01
49 76 0.30
50 169 0.66
51 9 0.04
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (50 bp):
AGTAATGTTATCTTCAAACTGACTTTCTCGTGTAAATGAGTCAATCTTTT
Found at i:724816 original size:29 final size:29
Alignment explanation
Indices: 724771--724828 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
724761 TGTGTATATG
* * *
724771 AGTCAATCTTTTAGTAATGTTATCTTCAA
1 AGTCAATCATTTAGTAATGTCATCCTCAA
*
724800 AGTCAATCATTTCGTAATGTCATCCTCAA
1 AGTCAATCATTTAGTAATGTCATCCTCAA
724829 TATGTCTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (29 bp):
AGTCAATCATTTAGTAATGTCATCCTCAA
Found at i:724852 original size:79 final size:79
Alignment explanation
Indices: 724721--724868 Score: 199
Period size: 79 Copynumber: 1.9 Consensus size: 79
724711 CATGTAGAGG
* * * * * * *
724721 AGTCAATCATTTAGTAATGTTATCTTCAATCCTACTTTCTTGTGTATATGAGTCAATCTTTTAGT
1 AGTCAATCATTTAGTAATGTCATCCTCAATCATACTTTATCGTGTAAATGAGTCAATCATTTAGT
724786 AATGTTATCTTCAA
66 AATGTTATCTTCAA
* *
724800 AGTCAATCATTTCGTAATGTCATCCTCAAT-ATGTCTTTATCGTGTAAATGAGTCAATCATTTAG
1 AGTCAATCATTTAGTAATGTCATCCTCAATCAT-ACTTTATCGTGTAAATGAGTCAATCATTTAG
724864 TAATG
65 TAATG
724869 AAGTCTTCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 1 0.02
79 58 0.98
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.43
Consensus pattern (79 bp):
AGTCAATCATTTAGTAATGTCATCCTCAATCATACTTTATCGTGTAAATGAGTCAATCATTTAGT
AATGTTATCTTCAA
Found at i:724859 original size:50 final size:50
Alignment explanation
Indices: 724800--724960 Score: 173
Period size: 50 Copynumber: 3.2 Consensus size: 50
724790 TTATCTTCAA
* * * * *
724800 AGTCAATCATTTCGTAATGTCATCCTCAATATGTCTTTATCGTGTAAATG
1 AGTCAATCATTTCGTAATGTAATCCTCAATATGACTTTCTCGTGTAGAGG
* * *
724850 AGTCAATCATTTAGTAATG-AAGTCTTCAACATGACTTTCTCGTGTAGAGG
1 AGTCAATCATTTCGTAATGTAA-TCCTCAATATGACTTTCTCGTGTAGAGG
** * * *
724900 AGTCAATCA-TTCAGTAATGTTGTCCTCAGTCTGACTTTCTTGTGTAGAGG
1 AGTCAATCATTTC-GTAATGTAATCCTCAATATGACTTTCTCGTGTAGAGG
724950 AGTCAATCATT
1 AGTCAATCATT
724961 CAAACCTAAT
Statistics
Matches: 91, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
49 3 0.03
50 87 0.96
51 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (50 bp):
AGTCAATCATTTCGTAATGTAATCCTCAATATGACTTTCTCGTGTAGAGG
Found at i:725630 original size:13 final size:13
Alignment explanation
Indices: 725610--725644 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
725600 ACAATACAAA
725610 ACTTTCATATTTC
1 ACTTTCATATTTC
*
725623 ATTTTCATATTTC
1 ACTTTCATATTTC
725636 ACTTTCATA
1 ACTTTCATA
725645 ATCAATGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.20, G:0.00, T:0.54
Consensus pattern (13 bp):
ACTTTCATATTTC
Found at i:725741 original size:37 final size:37
Alignment explanation
Indices: 725677--725750 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
725667 ACTCATTCTA
** *
725677 AGATTCAGAACTTGTTTTCGGACTCATAACTTATTTT
1 AGATTCAGAACTTAATTTCAGACTCATAACTTATTTT
* * *
725714 AGATTCATAACTTAATTTCAGATTCATAGCTTATTTT
1 AGATTCAGAACTTAATTTCAGACTCATAACTTATTTT
725751 CAAGTCATAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.45
Consensus pattern (37 bp):
AGATTCAGAACTTAATTTCAGACTCATAACTTATTTT
Found at i:725761 original size:18 final size:19
Alignment explanation
Indices: 725677--725752 Score: 91
Period size: 19 Copynumber: 4.1 Consensus size: 19
725667 ACTCATTCTA
* *
725677 AGATTCAGAACTTGTTTTC
1 AGATTCATAACTTATTTTC
* *
725696 GGACTCATAACTTATTTT-
1 AGATTCATAACTTATTTTC
*
725714 AGATTCATAACTTAATTTC
1 AGATTCATAACTTATTTTC
*
725733 AGATTCATAGCTTATTTTC
1 AGATTCATAACTTATTTTC
725752 A
1 A
725753 AGTCATAGCC
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
18 15 0.32
19 32 0.68
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (19 bp):
AGATTCATAACTTATTTTC
Found at i:731891 original size:13 final size:13
Alignment explanation
Indices: 731871--731930 Score: 68
Period size: 13 Copynumber: 4.7 Consensus size: 13
731861 ACAATACAAA
*
731871 ACTTTCATATCTC
1 ACTTTCATATTTC
* *
731884 ATTTTCATCTTTC
1 ACTTTCATATTTC
731897 ACTTTCATA-TTC
1 ACTTTCATATTTC
*
731909 ACTTTCACATTTC
1 ACTTTCATATTTC
*
731922 ATTTTCATA
1 ACTTTCATA
731931 ATTCGTACTT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
12 11 0.29
13 27 0.71
ACGTcount: A:0.23, C:0.25, G:0.00, T:0.52
Consensus pattern (13 bp):
ACTTTCATATTTC
Found at i:731947 original size:28 final size:25
Alignment explanation
Indices: 731871--731947 Score: 84
Period size: 25 Copynumber: 2.9 Consensus size: 25
731861 ACAATACAAA
*
731871 ACTTTCATATCTCATTTTCATC-TTTC
1 ACTTTCATAT-TCACTTTCA-CATTTC
731897 ACTTTCATATTCACTTTCACATTTC
1 ACTTTCATATTCACTTTCACATTTC
*
731922 ATTTTCATAATTCGTACTTTCACATT
1 ACTTTCAT-ATTC--ACTTTCACATT
731948 CTAATAACTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
24 1 0.02
25 19 0.42
26 14 0.31
28 11 0.24
ACGTcount: A:0.23, C:0.25, G:0.01, T:0.51
Consensus pattern (25 bp):
ACTTTCATATTCACTTTCACATTTC
Found at i:734881 original size:713 final size:713
Alignment explanation
Indices: 733509--734887 Score: 2598
Period size: 713 Copynumber: 1.9 Consensus size: 713
733499 TACTATTTAG
* *
733509 AATAGTCAAATTTCACATTCTAACACCAAATTCATCACTCTAACATTAATTTCCAGCATAGTACT
1 AATAGTCAAATTTCACATTCTAACACCAAATTCATCACTCTAACAATAATTTCCAGCATAATACT
*
733574 TCATGTATTGAATAATTACATGTCAACCCATAACTTTTCAAATTTTTTGAATAGGTCCCCCAACT
66 TCATGTATTGAATAATTACACGTCAACCCATAACTTTTCAAATTTTTTGAATAGGTCCCCCAACT
*
733639 TTTTTAAAATTACAAATTGTCCAAATAACTTTCTAAAGCTTGTAGGATCTTTCTTACATCATTTC
131 TTTTTAAAATTAAAAATTGTCCAAATAACTTTCTAAAGCTTGTAGGATCTTTCTTACATCATTTC
733704 TAACCCTTGTATAATTTCCCATAATTTTTCTCACTACCAAAGCTTAGGTCGAATGTTAAGGGGGT
196 TAACCCTTGTATAATTTCCCATAATTTTTCTCACTACCAAAGCTTAGGTCGAATGTTAAGGGGGT
*
733769 AGCGTTTCATGATTTCACTTTATTTTAATTTGATTCGAGCATGAAATCAACCTCTATTCAATATT
261 AGCGTTTCATGATTTCACTTTATTTCAATTTGATTCGAGCATGAAATCAACCTCTATTCAATATT
*
733834 TTAAACCTCTACAATCAAACCCCTAACTCAATTTCATTAAATATCAAACTTTCACTAATTTAGGG
326 TTAAACCTCTACAATCAAACCCCTAACTCAATTTCATCAAATATCAAACTTTCACTAATTTAGGG
733899 TTTAGAAAGAAAATCAATATAGCATTTCTAGGTGGTTTTGAGCATCAAACAAGCTTGGAAATCAT
391 TTTAGAAAGAAAATCAATATAGCATTTCTAGGTGGTTTTGAGCATCAAACAAGCTTGGAAATCAT
733964 TCTAGAGCCTCAACAATCTCAAAATCCATCATCAATTCATAAAACCCTAACATGAACATAAACCC
456 TCTAGAGCCTCAACAATCTCAAAATCCATCATCAATTCATAAAACCCTAACATGAACATAAACCC
* *
734029 TAAAATTTAGGAACTTAACATTCAAGCAAGATTAGCCTGCAATAATGGTACCAAATGATAGAGCT
521 TAAAATTTAGGAACTTAACATTCAAGCAAGATTAGCATGCAATAATGGAACCAAATGATAGAGCT
* *
734094 CTTCGAATTGAGCAATTTTCTATTTCACGGTTCGATCCAAAATCTAGAGGAAATTGCTCAAAAAA
586 CTTCGAATAGAACAATTTTCTATTTCACGGTTCGATCCAAAATCTAGAGGAAATTGCTCAAAAAA
734159 TGAAAAATAAAATTTAACAATTGATATTTGTCATTTATTACTCAAACTTTGACAACTTCCCAA
651 TGAAAAATAAAATTTAACAATTGATATTTGTCATTTATTACTCAAACTTTGACAACTTCCCAA
*
734222 AATAGTGAAATTTCACATTCTAACACCAAATTCATCACTCTAACAATAATTTCCAGCATAATACT
1 AATAGTCAAATTTCACATTCTAACACCAAATTCATCACTCTAACAATAATTTCCAGCATAATACT
*
734287 TCATGTATTGAATAATTACACGTCAACCCATAACTTTTCAAATTTTTTTAATAGGTCCCCCAACT
66 TCATGTATTGAATAATTACACGTCAACCCATAACTTTTCAAATTTTTTGAATAGGTCCCCCAACT
*
734352 TTTTTTAAATTAAAAATTGTCCAAATAACTTTCTAAAGCTTGTAGGATCTTTCTTACATCATTTC
131 TTTTTAAAATTAAAAATTGTCCAAATAACTTTCTAAAGCTTGTAGGATCTTTCTTACATCATTTC
734417 TAACCCTTGTATAATTTCCCATAATTTTTCTCACTACCAAAGCTTAGGTCGAATGTTAAGGGGGT
196 TAACCCTTGTATAATTTCCCATAATTTTTCTCACTACCAAAGCTTAGGTCGAATGTTAAGGGGGT
734482 AGCGTTTCATGATTTCACTTTATTTCAATTTGATTCGAGCATGAAATCAACCTCTATTCAATATT
261 AGCGTTTCATGATTTCACTTTATTTCAATTTGATTCGAGCATGAAATCAACCTCTATTCAATATT
*
734547 TTAAACCTCTACAATCAAACCCCTAACTCAATTTCATCAAATATCAAATTTTCACTAATTTAGGG
326 TTAAACCTCTACAATCAAACCCCTAACTCAATTTCATCAAATATCAAACTTTCACTAATTTAGGG
734612 TTTAGAAAGAAAATCAATATAGCATTTCTAGGTGGTTTTGAGCATCAAACAAGCTTGGAAATCAT
391 TTTAGAAAGAAAATCAATATAGCATTTCTAGGTGGTTTTGAGCATCAAACAAGCTTGGAAATCAT
* *
734677 TCTAGAGCCTCAACAATCTTAAAATCCATCATCAATTCATAAAACCGTAACATGAACATAAACCC
456 TCTAGAGCCTCAACAATCTCAAAATCCATCATCAATTCATAAAACCCTAACATGAACATAAACCC
734742 TAAAATTT-GTGAACTTAACATTCAAGCAAGATTAGCATGCAATAATGGAACCAAATGATAGAGC
521 TAAAATTTAG-GAACTTAACATTCAAGCAAGATTAGCATGCAATAATGGAACCAAATGATAGAGC
734806 TCTTCGAATAGAACAATTTTCTATTTCACGGTTCGATCCAAAATCTAGAGGAAATTGCTCAAAAA
585 TCTTCGAATAGAACAATTTTCTATTTCACGGTTCGATCCAAAATCTAGAGGAAATTGCTCAAAAA
734871 ATGAAAAATAAAATTTA
650 ATGAAAAATAAAATTTA
734888 TCTTACCTAG
Statistics
Matches: 649, Mismatches: 16, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
712 1 0.00
713 648 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (713 bp):
AATAGTCAAATTTCACATTCTAACACCAAATTCATCACTCTAACAATAATTTCCAGCATAATACT
TCATGTATTGAATAATTACACGTCAACCCATAACTTTTCAAATTTTTTGAATAGGTCCCCCAACT
TTTTTAAAATTAAAAATTGTCCAAATAACTTTCTAAAGCTTGTAGGATCTTTCTTACATCATTTC
TAACCCTTGTATAATTTCCCATAATTTTTCTCACTACCAAAGCTTAGGTCGAATGTTAAGGGGGT
AGCGTTTCATGATTTCACTTTATTTCAATTTGATTCGAGCATGAAATCAACCTCTATTCAATATT
TTAAACCTCTACAATCAAACCCCTAACTCAATTTCATCAAATATCAAACTTTCACTAATTTAGGG
TTTAGAAAGAAAATCAATATAGCATTTCTAGGTGGTTTTGAGCATCAAACAAGCTTGGAAATCAT
TCTAGAGCCTCAACAATCTCAAAATCCATCATCAATTCATAAAACCCTAACATGAACATAAACCC
TAAAATTTAGGAACTTAACATTCAAGCAAGATTAGCATGCAATAATGGAACCAAATGATAGAGCT
CTTCGAATAGAACAATTTTCTATTTCACGGTTCGATCCAAAATCTAGAGGAAATTGCTCAAAAAA
TGAAAAATAAAATTTAACAATTGATATTTGTCATTTATTACTCAAACTTTGACAACTTCCCAA
Found at i:735498 original size:29 final size:31
Alignment explanation
Indices: 735421--735499 Score: 81
Period size: 29 Copynumber: 2.6 Consensus size: 31
735411 CTTTTGAAGA
* *
735421 TTACACTTTTGGTCCCTAAACTTTTCTAAACT
1 TTACA-TTTTGGTCACTAAACTTTTCTAAAAT
* * * *
735453 TTATACTTTAGCCACTAAAC-TTTC-AAAAT
1 TTACATTTTGGTCACTAAACTTTTCTAAAAT
735482 TTACATTTTGGTCACTAA
1 TTACATTTTGGTCACTAA
735500 CCAAAATTTT
Statistics
Matches: 37, Mismatches: 10, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
29 18 0.49
30 4 0.11
31 11 0.30
32 4 0.11
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.42
Consensus pattern (31 bp):
TTACATTTTGGTCACTAAACTTTTCTAAAAT
Found at i:737575 original size:60 final size:58
Alignment explanation
Indices: 737461--737576 Score: 144
Period size: 60 Copynumber: 2.0 Consensus size: 58
737451 CAAATGACAC
* * * * *
737461 GATGCCTTCAAGTTCCAAGGGGGCATTCAACTGCGAGCTTCTTTGACCTCAATGTCGA
1 GATGCCTTCAAGTTCCAAGGGGGCATTCAACTACCAGCTTATTCGACCTAAATGTCGA
*
737519 GATGCCTTCAAGTT-CAAGGGGAGGGCATTCAACTACCAGCTTATTCGGCCTAAATGTC
1 GATGCCTTCAAGTTCCAA--GG-GGGCATTCAACTACCAGCTTATTCGACCTAAATGTC
737577 AGCATCGTGG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
57 3 0.06
58 14 0.29
59 2 0.04
60 30 0.61
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (58 bp):
GATGCCTTCAAGTTCCAAGGGGGCATTCAACTACCAGCTTATTCGACCTAAATGTCGA
Found at i:740001 original size:19 final size:19
Alignment explanation
Indices: 739963--740001 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
739953 ACAAACAAAA
*
739963 TAAATAAAAAATTCATAAT
1 TAAATAAAAAATTCACAAT
* *
739982 TAAATAAAAACTTTACAAT
1 TAAATAAAAAATTCACAAT
740001 T
1 T
740002 GTCAGTAAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAATAAAAAATTCACAAT
Found at i:742152 original size:26 final size:28
Alignment explanation
Indices: 742114--742171 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
742104 TAATACTAAA
*
742114 AATT-AAATAAATAAAAC-ATTTACAAT
1 AATTAAAATAAATAAAACAATTTAAAAT
*
742140 AATTAAAAT-AATAACACAATTTAAAAT
1 AATTAAAATAAATAAAACAATTTAAAAT
*
742167 TATTA
1 AATTA
742172 CCGTATCGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 11 0.41
27 16 0.59
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (28 bp):
AATTAAAATAAATAAAACAATTTAAAAT
Found at i:742299 original size:16 final size:17
Alignment explanation
Indices: 742268--742300 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
742258 TAATATTATA
742268 AAATTTAATAAAATAAT
1 AAATTTAATAAAATAAT
*
742285 AAATTT-ATTAAATAAT
1 AAATTTAATAAAATAAT
742301 TCTAATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATTTAATAAAATAAT
Found at i:746562 original size:21 final size:21
Alignment explanation
Indices: 746536--746582 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
746526 TATCCCATTA
746536 GTCACGCCTAAAAATTGATCC
1 GTCACGCCTAAAAATTGATCC
746557 GTCACGCCTAAAAATTGATCC
1 GTCACGCCTAAAAATTGATCC
*
746578 ATCAC
1 GTCAC
746583 TTTGAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (21 bp):
GTCACGCCTAAAAATTGATCC
Found at i:748651 original size:6 final size:6
Alignment explanation
Indices: 748640--748669 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
748630 TAACACCTTG
748640 TGCATT TGCATT TGCATT TGCATT TGCATT
1 TGCATT TGCATT TGCATT TGCATT TGCATT
748670 CTTATTATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (6 bp):
TGCATT
Found at i:752806 original size:42 final size:41
Alignment explanation
Indices: 752759--752855 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 41
752749 ATAATTTAAG
* * *
752759 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATGAAA
1 TCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGAT-AAA
* * * *
752801 TCCTTCAGGTCATCTGTAAGCCTTTAGAGCAAGATGATAAG
1 TCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGATAAA
*
752842 TCATTCGGGCCATC
1 TCCTTCGGGCCATC
752856 CATAAGACCT
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 13 0.29
42 32 0.71
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (41 bp):
TCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGATAAA
Found at i:753123 original size:20 final size:20
Alignment explanation
Indices: 753094--753146 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
753084 CATGATGATG
*
753094 AAGTCCTTCGAGCCATCAGT
1 AAGTCTTTCGAGCCATCAGT
*
753114 AAGTCTTTCGGGCCATCAGT
1 AAGTCTTTCGAGCCATCAGT
753134 AAGTCTTTCGAGC
1 AAGTCTTTCGAGC
753147 ATGATGATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (20 bp):
AAGTCTTTCGAGCCATCAGT
Found at i:753265 original size:142 final size:142
Alignment explanation
Indices: 752969--753244 Score: 453
Period size: 142 Copynumber: 1.9 Consensus size: 142
752959 TTTCTCACTT
*
752969 AGTAAGTCCTTCGGGCCATCAATAAGTATTTCGAGCATGATGATTAAATCCTTCGGGTAATTTGT
1 AGTAAGTCTTTCGGGCCATCAATAAGTATTTCGAGCATGATGATTAAATCCTTCGGGTAATTTGT
* * * *
753034 AAGCTTTCACGGAAGAGTAGTAAAGCAAACCCATCAGTAAGTCTTTCAAACATGATGATGAAGTC
66 AAGCCTTCACCGAAGAGTAGTAAAGCAAACCCATCAATAAGTCTTTCAAACATGATGATGAAATC
753099 CTTCGAGCCATC
131 CTTCGAGCCATC
* * *
753111 AGTAAGTCTTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAGTTTGT
1 AGTAAGTCTTTCGGGCCATCAATAAGTATTTCGAGCATGATGATTAAATCCTTCGGGTAATTTGT
* * *
753176 AAGCCTTCACCGAAGAGTAGTGAAGCAAATCCATCAATAAGTCTTTCAAGCATGATGATGAAATC
66 AAGCCTTCACCGAAGAGTAGTAAAGCAAACCCATCAATAAGTCTTTCAAACATGATGATGAAATC
753241 CTTC
131 CTTC
753245 AGGTCATTTG
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
142 123 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (142 bp):
AGTAAGTCTTTCGGGCCATCAATAAGTATTTCGAGCATGATGATTAAATCCTTCGGGTAATTTGT
AAGCCTTCACCGAAGAGTAGTAAAGCAAACCCATCAATAAGTCTTTCAAACATGATGATGAAATC
CTTCGAGCCATC
Found at i:753275 original size:42 final size:41
Alignment explanation
Indices: 753216--753294 Score: 104
Period size: 42 Copynumber: 1.9 Consensus size: 41
753206 CCATCAATAA
* *
753216 GTCTTTCAAGCATGATGATGAAATCCTTCAGGTCATTTGTAT
1 GTCTTTCAAGCAAGATGAT-AAATCCTTCAGGCCATTTGTAT
* * *
753258 GTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATTT
1 GTCTTTCAAGCAAGATGATAAATCCTTCAGGCCATTT
753295 TAAGCCTTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
41 15 0.47
42 17 0.53
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (41 bp):
GTCTTTCAAGCAAGATGATAAATCCTTCAGGCCATTTGTAT
Found at i:753789 original size:53 final size:53
Alignment explanation
Indices: 753669--753977 Score: 437
Period size: 53 Copynumber: 5.9 Consensus size: 53
753659 AGAAGTACAC
* * *
753669 CAGAAGATTGTTCAAGTTTTACTCCCTGAAGCAAGAGGGAG-G-A-CTGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * *
753719 TAGAAGATTGTCCGAGTTCTACTCCCTGAAGCAAGAGGGAACGAACCCGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* *
753772 CAGAAGATTGTTCGAGTTTTACTCCCTGAAGCAAGAGGGAGCTAACCCGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
*
753825 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTGAACCC-TAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * * *
753877 CAGAAGATTGTTCGAGTTCTACTCTCTGAAGCAAAATGGAGCAAACCCGTAAG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * *
753930 CAGAAGATTATTCGAGTTCTACTCCCTGAAGCAATAGGGAGCAAACCC
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCC
753978 ATTTTTAGAA
Statistics
Matches: 231, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
50 36 0.16
51 1 0.00
52 48 0.21
53 146 0.63
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (53 bp):
CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
Found at i:753927 original size:105 final size:105
Alignment explanation
Indices: 753669--754033 Score: 450
Period size: 105 Copynumber: 3.5 Consensus size: 105
753659 AGAAGTACAC
* * * * *
753669 CAGAAGATTGTTCAAGTTTTACTCCCTGAAGCAAGAGGGAG-GA-CTGTAGGTAGAAGATTGTCC
1 CAGAAGATTGTTCGAGTTTTACTCCCTGAAGCAAGAGGGAGCAACCCGTAGGCAGAAGATTGTTC
*
753732 GAGTTCTACTCCCTGAAGCAAGAGGGAACGAACCCGTAGG
66 GAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
753772 CAGAAGATTGTTCGAGTTTTACTCCCTGAAGCAAGAGGGAGCTAACCCGTAGGCAGAAGATTGTT
1 CAGAAGATTGTTCGAGTTTTACTCCCTGAAGCAAGAGGGAGC-AACCCGTAGGCAGAAGATTGTT
*
753837 CGAGTTCTACTCCCTGAAGCAAGAGGGAGTGAACCC-TAGG
65 CGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * * * *
753877 CAGAAGATTGTTCGAGTTCTACTCTCTGAAGCAAAATGGAGCAAACCCGTAAGCAGAAGATTATT
1 CAGAAGATTGTTCGAGTTTTACTCCCTGAAGCAAGAGGGAGC-AACCCGTAGGCAGAAGATTGTT
* * * ***
753942 CGAGTTCTACTCCCTGAAGCAATAGGGAGCAAACCCATTTT
65 CGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * *
753983 TAGAAGATTGTTCGATTTCCTTAATCGCTGAA-CAAGAGGGAGCAGACCCGT
1 CAGAAGATTGTTCGAGTT--TTACTCCCTGAAGCAAGAGGGAGCA-ACCCGT
754034 CATTTGAAGA
Statistics
Matches: 228, Mismatches: 27, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
103 40 0.18
105 96 0.42
106 68 0.30
107 15 0.07
108 9 0.04
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (105 bp):
CAGAAGATTGTTCGAGTTTTACTCCCTGAAGCAAGAGGGAGCAACCCGTAGGCAGAAGATTGTTC
GAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
Found at i:753955 original size:158 final size:156
Alignment explanation
Indices: 753669--753977 Score: 456
Period size: 158 Copynumber: 2.0 Consensus size: 156
753659 AGAAGTACAC
* ** *
753669 CAGAAGATTGTTCAAGTTTTACTCCCTGAAGCAAGAGGGAGGACTGTAGGTAGAAGATTGTCCGA
1 CAGAAGATTGTTCAAGTTCTACTCCCTGAAGCAAGAGGGAGGACCCTAGGCAGAAGATTGTCCGA
* * * * *
753734 GTTCTACTCCCTGAAGCAAGAGGGAACGAACCCGTAGGCAGAAGATTGTTCGAGTTTTACTCCCT
66 GTTCTACTCCCTGAAGCAAAAGGGAACAAACCCGTAAGCAGAAGATTATTCGAGTTCTACTCCCT
*
753799 GAAGCAAGAGGGAGCTAACCCGTAGG
131 GAAGCAAGAGGGAGCAAACCCGTAGG
* *
753825 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTGAACCCTAGGCAGAAGATTGTTC
1 CAGAAGATTGTTCAAGTTCTACTCCCTGAAGCAAGAGGGAG-G-ACCCTAGGCAGAAGATTGTCC
* * *
753890 GAGTTCTACTCTCTGAAGCAAAATGGAGCAAACCCGTAAGCAGAAGATTATTCGAGTTCTACTCC
64 GAGTTCTACTCCCTGAAGCAAAAGGGAACAAACCCGTAAGCAGAAGATTATTCGAGTTCTACTCC
*
753955 CTGAAGCAATAGGGAGCAAACCC
129 CTGAAGCAAGAGGGAGCAAACCC
753978 ATTTTTAGAA
Statistics
Matches: 135, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
156 39 0.29
157 1 0.01
158 95 0.70
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (156 bp):
CAGAAGATTGTTCAAGTTCTACTCCCTGAAGCAAGAGGGAGGACCCTAGGCAGAAGATTGTCCGA
GTTCTACTCCCTGAAGCAAAAGGGAACAAACCCGTAAGCAGAAGATTATTCGAGTTCTACTCCCT
GAAGCAAGAGGGAGCAAACCCGTAGG
Found at i:753988 original size:53 final size:53
Alignment explanation
Indices: 753669--754033 Score: 434
Period size: 53 Copynumber: 6.9 Consensus size: 53
753659 AGAAGTACAC
* * * *
753669 CAGAAGATTGTTCAAGTTTTACTCCCTGAAGCAAGAGGGAG--GA-CTGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCGTAGG
* * * *
753719 TAGAAGATTGTCCGAGTTCTACTCCCTGAAGCAAGAGGGAACGAACCCGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCGTAGG
* *
753772 CAGAAGATTGTTCGAGTTTTACTCCCTGAAGCAAGAGGGAGCTAACCCGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCGTAGG
**
753825 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTGAACCC-TAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCGTAGG
* * * *
753877 CAGAAGATTGTTCGAGTTCTACTCTCTGAAGCAAAATGGAGCAAACCCGTAAG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCGTAGG
* * * ***
753930 CAGAAGATTATTCGAGTTCTACTCCCTGAAGCAATAGGGAGCAAACCCATTTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCGTAGG
* * * * *
753983 TAGAAGATTGTTCGATTTCCTTAATCGCTGAA-CAAGAGGGAGCAGACCCGT
1 CAGAAGATTGTTCGAGTT-C-TACTCCCTGAAGCAAGAGGGAGCAAACCCGT
754034 CATTTGAAGA
Statistics
Matches: 272, Mismatches: 37, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
50 36 0.13
52 48 0.18
53 162 0.60
54 17 0.06
55 9 0.03
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (53 bp):
CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCGTAGG
Found at i:753988 original size:158 final size:156
Alignment explanation
Indices: 753669--754024 Score: 453
Period size: 158 Copynumber: 2.3 Consensus size: 156
753659 AGAAGTACAC
* * ** *
753669 CAGAAGATTGTTCAAGTTTTACTCCCTGAAGCAAGAGGGAGGACTGTAGGTAGAAGATTGTCCGA
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGGACCCTAGGCAGAAGATTGTCCGA
* * * * *
753734 GTTCTACTCCCTGAAGCAAGAGGGAACGAACCCGTAGGCAGAAGATTGTTCGAGTTTTACTCCCT
66 GTTCTACTCCCTGAAGCAAAAGGGAACAAACCCGTAAGCAGAAGATTATTCGAGTTCTACTCCCT
* *
753799 GAAGCAAGAGGGAGCTAACCCGTAGG
131 GAAGCAAGAGGGAGCAAACCCATAGG
*
753825 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTGAACCCTAGGCAGAAGATTGTTC
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAG-G-ACCCTAGGCAGAAGATTGTCC
* * *
753890 GAGTTCTACTCTCTGAAGCAAAATGGAGCAAACCCGTAAGCAGAAGATTATTCGAGTTCTACTCC
64 GAGTTCTACTCCCTGAAGCAAAAGGGAACAAACCCGTAAGCAGAAGATTATTCGAGTTCTACTCC
* ***
753955 CTGAAGCAATAGGGAGCAAACCCATTTT
129 CTGAAGCAAGAGGGAGCAAACCCATAGG
* * * *
753983 TAGAAGATTGTTCGATTTCCTTAATCGCTGAA-CAAGAGGGAG
1 CAGAAGATTGTTCGAGTT-C-TACTCCCTGAAGCAAGAGGGAG
754025 CAGACCCGTC
Statistics
Matches: 172, Mismatches: 24, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
156 39 0.23
157 1 0.01
158 112 0.65
159 11 0.06
160 9 0.05
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (156 bp):
CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGGACCCTAGGCAGAAGATTGTCCGA
GTTCTACTCCCTGAAGCAAAAGGGAACAAACCCGTAAGCAGAAGATTATTCGAGTTCTACTCCCT
GAAGCAAGAGGGAGCAAACCCATAGG
Found at i:757690 original size:23 final size:23
Alignment explanation
Indices: 757633--757690 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
757623 TATTGTTGTT
* *
757633 TTTATTTACGTTCGTTTATGTTCA
1 TTTA-TTATGTTCGATTATGTTCA
*
757657 TTTATTGTGTTCGATTATGTTCA
1 TTTATTATGTTCGATTATGTTCA
*
757680 TTTGTTATGTT
1 TTTATTATGTT
757691 TATGTGGGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 25 0.86
24 4 0.14
ACGTcount: A:0.16, C:0.09, G:0.16, T:0.60
Consensus pattern (23 bp):
TTTATTATGTTCGATTATGTTCA
Found at i:757739 original size:33 final size:32
Alignment explanation
Indices: 757637--757739 Score: 89
Period size: 33 Copynumber: 3.1 Consensus size: 32
757627 GTTGTTTTTA
* * *
757637 TTTACGTTCGTTTATGTTCATTTATTGTGTTCG
1 TTTATGTTCATTTAT-TTTATTTATTGTGTTCG
* * * * * *
757670 ATTATGTTCATTTGTTATGTTTATGTGGGATCG
1 TTTATGTTCATTTATTTTATTTAT-TGTGTTCG
*
757703 TTTATGTTCATTTATATTTATTTATTGTGTTTG
1 TTTATGTTCATTTAT-TTTATTTATTGTGTTCG
757736 TTTA
1 TTTA
757740 CATTTGTTCA
Statistics
Matches: 52, Mismatches: 16, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
32 6 0.12
33 39 0.75
34 7 0.13
ACGTcount: A:0.17, C:0.07, G:0.17, T:0.59
Consensus pattern (32 bp):
TTTATGTTCATTTATTTTATTTATTGTGTTCG
Found at i:760173 original size:2 final size:2
Alignment explanation
Indices: 760166--760195 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
760156 GTCTGCATCC
760166 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
760196 ACTTGTGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:763986 original size:19 final size:19
Alignment explanation
Indices: 763934--763988 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 19
763924 ACGGGTTAGA
** *
763934 TCAAAGTCAACATGTCAGG
1 TCAAAGTCAACGGGTCGGG
763953 TCAAAGTCAACGGGTCGGG
1 TCAAAGTCAACGGGTCGGG
*
763972 TCAAAGTCAATGGGTCG
1 TCAAAGTCAACGGGTCG
763989 TGTTGACTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.20
Consensus pattern (19 bp):
TCAAAGTCAACGGGTCGGG
Found at i:765336 original size:14 final size:13
Alignment explanation
Indices: 765292--765335 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
765282 TTCTAAAAAA
*
765292 TATTTTCTATTTC
1 TATTTTCTATTTT
765305 TA-TTTCTATTTT
1 TATTTTCTATTTT
*
765317 TATTTTCTAATTT
1 TATTTTCTATTTT
*
765330 TGTTTT
1 TATTTT
765336 TAGAAAATAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 11 0.41
13 16 0.59
ACGTcount: A:0.16, C:0.09, G:0.02, T:0.73
Consensus pattern (13 bp):
TATTTTCTATTTT
Found at i:768651 original size:118 final size:123
Alignment explanation
Indices: 768490--768736 Score: 389
Period size: 123 Copynumber: 2.0 Consensus size: 123
768480 TTTACGATAT
*
768490 TATTTATCGATAGTCGGTATTTTTTATTATCTTTTTATTTTCATATATTGTAT-TTT-TA-TTTA
1 TATTTATCGACAGTCGGTATTTTTTATTATCTTTTTATTTTCATATATTGTATCTTTATATTTTA
768552 T-TTTATT-TATTTTTATAAGTATGCTTATGCGGTACATTTTCATTTGTCTTTATTGTA
66 TATTT-TTATATTTTTATAAGTATGCTTATGCGGTACATTTTCATTTGTCTTTATTGTA
* *
768609 TATTTGTCGACAGTCGTTA-TTTTTATTATCTTTTTATTTTCATATATTGTATCTTTATATTTTT
1 TATTTATCGACAGTCGGTATTTTTTATTATCTTTTTATTTTCATATATTGTATCTTTATA-TTTT
* *
768673 ATATTTTTATTTTTTTATAAGTATGTTTATGCGGTACATTTTCATTTGTCTTTATTGTA
65 ATATTTTTATATTTTTATAAGTATGCTTATGCGGTACATTTTCATTTGTCTTTATTGTA
768732 TATTT
1 TATTT
768737 TTTTGTTCGC
Statistics
Matches: 117, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
118 33 0.28
119 19 0.16
120 2 0.02
122 7 0.06
123 56 0.48
ACGTcount: A:0.21, C:0.08, G:0.10, T:0.61
Consensus pattern (123 bp):
TATTTATCGACAGTCGGTATTTTTTATTATCTTTTTATTTTCATATATTGTATCTTTATATTTTA
TATTTTTATATTTTTATAAGTATGCTTATGCGGTACATTTTCATTTGTCTTTATTGTA
Found at i:768661 original size:23 final size:22
Alignment explanation
Indices: 768635--768690 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
768625 TTATTTTTAT
768635 TATCTTTTTATTTTCATATATTG
1 TATCTTTTTATTTTCATAT-TTG
* * *
768658 TATCTTTATATTTTTATATTTT
1 TATCTTTTTATTTTCATATTTG
*
768680 TATTTTTTTAT
1 TATCTTTTTAT
768691 AAGTATGTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 11 0.39
23 17 0.61
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.71
Consensus pattern (22 bp):
TATCTTTTTATTTTCATATTTG
Found at i:768675 original size:8 final size:8
Alignment explanation
Indices: 768626--768691 Score: 55
Period size: 8 Copynumber: 8.2 Consensus size: 8
768616 CGACAGTCGT
768626 TATTTTTA
1 TATTTTTA
768634 TTATCTTTT-
1 -TAT-TTTTA
*
768643 TATTTTCA
1 TATTTTTA
* *
768651 TA-TATTG
1 TATTTTTA
*
768658 TATCTTTA
1 TATTTTTA
768666 TATTTTTA
1 TATTTTTA
768674 TATTTTTA
1 TATTTTTA
*
768682 TTTTTTTA
1 TATTTTTA
768690 TA
1 TA
768692 AGTATGTTTA
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
7 7 0.16
8 30 0.68
9 3 0.07
10 4 0.09
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.71
Consensus pattern (8 bp):
TATTTTTA
Found at i:785732 original size:32 final size:31
Alignment explanation
Indices: 785659--785735 Score: 82
Period size: 32 Copynumber: 2.5 Consensus size: 31
785649 TTCAATGTCC
* * * *
785659 AAGTGACCAAAACTTTATAAAATGATAACGT
1 AAGTGACCAAAACTATACAAAATGAAAACGA
* * *
785690 AAGCGACCAAAAGTATACAAACATGAAAAGGA
1 AAGTGACCAAAACTATACAAA-ATGAAAACGA
785722 AAGTGACCAAAACT
1 AAGTGACCAAAACT
785736 TAATCTATGT
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
31 17 0.47
32 19 0.53
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.17
Consensus pattern (31 bp):
AAGTGACCAAAACTATACAAAATGAAAACGA
Found at i:788210 original size:2 final size:2
Alignment explanation
Indices: 788205--788230 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
788195 CGTTTTTTAA
788205 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
788231 TATTTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:792463 original size:22 final size:22
Alignment explanation
Indices: 792435--792486 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
792425 TATTCTATGT
792435 TATTTGGAGCTCAATTTGAATC
1 TATTTGGAGCTCAATTTGAATC
792457 TATTTGGAGCTCAATTTGAATC
1 TATTTGGAGCTCAATTTGAATC
*
792479 AATTTGGA
1 TATTTGGA
792487 ACCTTGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (22 bp):
TATTTGGAGCTCAATTTGAATC
Found at i:798440 original size:18 final size:18
Alignment explanation
Indices: 798414--798448 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
798404 ATTCTAAATA
798414 TTTACAGTTATCAGATAT
1 TTTACAGTTATCAGATAT
* *
798432 TTTATAGTTATTAGATA
1 TTTACAGTTATCAGATA
798449 CAATTTAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (18 bp):
TTTACAGTTATCAGATAT
Found at i:798577 original size:41 final size:41
Alignment explanation
Indices: 798532--798613 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
798522 AATTGAGTGA
* * *
798532 TTATCAATTCAGCTTTTGTACATTCATGTATCAATGCTCAG
1 TTATCAATTCAACTTTGGAACATTCATGTATCAATGCTCAG
* * *
798573 TTATCAGTTCAACTTTGGAACATTCGTGTATCAATGTTCAG
1 TTATCAATTCAACTTTGGAACATTCATGTATCAATGCTCAG
798614 CATCGTTGGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (41 bp):
TTATCAATTCAACTTTGGAACATTCATGTATCAATGCTCAG
Found at i:806404 original size:130 final size:130
Alignment explanation
Indices: 806171--806425 Score: 309
Period size: 130 Copynumber: 2.0 Consensus size: 130
806161 TATCAATGTA
* ** ** *
806171 TTACCGTGTACATTATTAATTTACCTATTACTTTACAGTGATAGGTTTTGAAATTATAAGAATCG
1 TTACCGTGTACATTATTAATTTACCTATTACTTTAAAGCAATAGGTTTCAAAATTACAAGAATCG
* * * *
806236 GTACTTATATGACAGTATCAATACTTGTACATTTACGCCTATTTTCATTATACTGGTAGAAACGT
66 ATACTTATATGACAGTATCAATACTTGTACATTTACGCCTAGTATCATTATACCGGTAGAAACGT
* * * *
806301 TTACCGTGTACATTGTTAATTTACCTATTACTTTAAAGCAATAGGTTTCAAAATTCCACGTATCG
1 TTACCGTGTACATTATTAATTTACCTATTACTTTAAAGCAATAGGTTTCAAAATTACAAGAATCG
* **
806366 ATACTT-TATG-CATGTGTATCGATACTTG-ATGTTTACGCCTAGTATCATTATACCGGTAGA
66 ATACTTATATGACA---GTATCAATACTTGTACATTTACGCCTAGTATCATTATACCGGTAGA
806426 CTTTTACCAT
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
128 2 0.02
129 4 0.04
130 87 0.83
131 12 0.11
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (130 bp):
TTACCGTGTACATTATTAATTTACCTATTACTTTAAAGCAATAGGTTTCAAAATTACAAGAATCG
ATACTTATATGACAGTATCAATACTTGTACATTTACGCCTAGTATCATTATACCGGTAGAAACGT
Found at i:807487 original size:201 final size:200
Alignment explanation
Indices: 806381--808075 Score: 1955
Period size: 200 Copynumber: 8.5 Consensus size: 200
806371 TTATGCATGT
* * * * *
806381 GTATCGATACTTGATGTTTACGCCTAGTATCATTATACCGGTAGACTTTTACCATTTTCATTGTA
1 GTATCGATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACATTGTA
* * * * * * * * * *
806446 AACTAACTTATTAATTTACATTAATAGGTTTCGAAATTATAAGTATAGATATTTTATATATGTGT
66 AATTTACCTATTACTTTAAAGTAATAGGTTTCGAAAGTCTAAGTATCGATACTTTATATATGTGT
* * * * * *
806511 ATTGATACATTTTGCGTGCAAATTGTTTGAGAAGCATAATGAAATAAAAGTATTGATACCTATAT
131 ATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATAT
806576 --AA-
196 AAAAC
* * * *
806578 -T-T-GATTA-TTGGTATTTACGCCTATTATCATTATACCGGTAGACTTTTACCGTTTACATTGT
1 GTATCGA-TACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACATTGT
* * * * * * * *
806639 AAATTTACCTATAACTTTAAAATAATCGGTTTTGAAATTCCACGTATCGATACTTTATACATGTG
65 AAATTTACCTATTACTTTAAAGTAATAGGTTTCGAAAGTCTAAGTATCGATACTTTATATATGTG
* * * * * *
806704 CATCGATGCATTTTGCGTGCAAATTG-TTGAGAAGCATATTGGACTAAAAGTATCGATACCTATA
130 TATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATA
*
806768 TATAAC
195 TAAAAC
* * * * * *
806774 GTATTGATACTTTATGTTTACACCTATTATCATTAAACCGATAAACTTTTACCGTTTACATTGTA
1 GTATCGATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACATTGTA
* * * * * *
806839 AATTTACGTATTACTTTATAGTAATAGGTTTC-AAAATTTCAAGTATCGATACTTTGTACATGTG
66 AATTTACCTATTACTTTAAAGTAATAGGTTTCGAAAGTCT-AAGTATCGATACTTTATATATGTG
* * * * *
806903 TATCGATACTTTGTGCGTGCAAAATGTTTGAGATGCAAACTGAAATAAAAGTATCGATATCTATA
130 TATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATA
* *
806968 CAAAAA
195 TAAAAC
* *
806974 GTATTGATACTTGATGTTTACGCCTATTATCATTAAACCGATAGATTTTTACCGTTTACATTGTA
1 GTATCGATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACATTGTA
* * * *
807039 AATTTACCTATTACTTTAAAGTAATCGGTTTCGATAGTCCAAGTATTGATACTTTATATATGTGT
66 AATTTACCTATTACTTTAAAGTAATAGGTTTCGAAAGTCTAAGTATCGATACTTTATATATGTGT
* * *
807104 ATCGATACTTTTTGCGTGCAAATTGTTTGAGATGCATAATGGAATAAAAGTATCGATACCTATAT
131 ATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATAT
807169 AATAAC
196 AA-AAC
* * * ** *
807175 -TATCAATACTTTATGTTT-TGCCTATTATCATTAAACAAGTAGATTTTTACTGTTTACATTGTA
1 GTATCGATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACATTGTA
* * * * * *
807238 AATTTACATATTACTTTATAGTAATAGGTTTTGAAATTAC-AAGTATCGATACTTTGTACATGTG
66 AATTTACCTATTACTTTAAAGTAATAGGTTTCGAAAGT-CTAAGTATCGATACTTTATATATGTG
* * * *
807302 TATCAATACTTTTTGCGTGTAAAATGTTTGAGAAGCATACAGGAATAAGAGTATCGATACCTATA
130 TATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATA
*
807367 CGAAAAC
195 -TAAAAC
* * ** * *
807374 GTATCAATACTTGATGTTTACACCTATTATCATTAAATTGGTAGATTTTTACCATTTACATTGTG
1 GTATCGATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACATTGTA
* *
807439 AATTTACCTATTACTTTAAAGTAATTGGTTTCTAAAGTCTAAGTATCGATACTTTATATATGTGT
66 AATTTACCTATTACTTTAAAGTAATAGGTTTCGAAAGTCTAAGTATCGATACTTTATATATGTGT
* * * *
807504 ATCAATACTTTTTCCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCAATACCTATAA
131 ATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATAT
807569 AAAATC
196 AAAA-C
* ** *
807575 GTATCGATACTTGATGTTTAAGCCTATTATCATTAAA-CAATAGATTTTTACCGTTTACATTATA
1 GTATCGATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACATTGTA
*
807639 AATTTTCCTATTACTTTAAAGTAATTA-GTTTCGAAAGTCTAAGTATCGATACTTTATATATGTG
66 AATTTACCTATTACTTTAAAGTAA-TAGGTTTCGAAAGTCTAAGTATCGATACTTTATATATGTG
** * * * * * * * *
807703 CGTCGTTATTTTTTTGTGTACAAATTGTTTGAGATGCATAGTGGAATAAAAGTATCGATACATAT
130 TATCGATA-CTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATACCTAT
* *
807768 ATAATAT
194 ATAAAAC
* * *
807775 ATATCAATACTTGATGTTTACGCCTATTATCATTAAACTGGTAGATTTTTACCGTTTACATTGTA
1 GTATCGATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACATTGTA
** * *
807840 AATTTACCTATTACTTTAAAAAAAATAGGTTTCGAAGGTCTAAGTATCGATACTTTATTTATGTG
66 AATTTACCTATTACTTT-AAAGTAATAGGTTTCGAAAGTCTAAGTATCGATACTTTATATATGTG
* * * ** *
807905 TATGGATATTTTTTTGCGTGCAAAAT-TTTGAGATGCATACTGGAATATCAGTATTGATACCTAT
130 TATCGATA-CTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATACCTAT
*
807969 ATAATA-
194 ATAAAAC
* * ** *
807975 GTATCGATACTTTATGTTTACTCCTATTATCATTAAATTGGTAGATTTTTACCGTTTACATTATA
1 GTATCGATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACATTGTA
** * *
808040 AATTTACCTATTTGTTAAAAGAAATAGGTTTCGAAA
66 AATTTACCTATTACTTTAAAGTAATAGGTTTCGAAA
808076 TTATAAGGAT
Statistics
Matches: 1283, Mismatches: 192, Indels: 44
0.84 0.13 0.03
Matches are distributed among these distances:
193 35 0.03
194 124 0.10
195 5 0.00
196 1 0.00
197 1 0.00
198 7 0.01
199 290 0.23
200 438 0.34
201 323 0.25
202 59 0.05
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (200 bp):
GTATCGATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACATTGTA
AATTTACCTATTACTTTAAAGTAATAGGTTTCGAAAGTCTAAGTATCGATACTTTATATATGTGT
ATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATAT
AAAAC
Found at i:807514 original size:400 final size:399
Alignment explanation
Indices: 806381--808095 Score: 1983
Period size: 399 Copynumber: 4.3 Consensus size: 399
806371 TTATGCATGT
* * * ** * * *
806381 GTATCGATACTTGATGTTTACGCCTAGTATCATTATACCGGTAGACTTTTACCATTTTCATTGTA
1 GTATCGATACTTTATGTTTACGCCTATTATCATTAAACAAGTAGATTTTTACCGTTTACATTGTA
* * * * * * * * * * *
806446 AACTAACTTATTAATTTACATTAATAGGTTTCGAAATTATAAGTATAGATATTTTATATATGTGT
66 AATTTACCTATTACTTTAAAGTAATAGGTTTCGAAATTACAAGTATCGATACTTTGTACATGTGT
* * * *
806511 ATTGATACATTTTGCGTGCAAATTGTTTGAGAAGCATA-ATGAAATAAAAGTATTGATACCTAT-
131 ATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACA-GAAATAAAAGTATCGATACCTATA
* * * * * * *
806574 ATAA-T-TGATTA-TTGGTATTTACGCCTATTATCATTATACCGGTAGACTTTTACCGTTTACAT
195 AAAAGTATCAATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACAT
* * * * *
806636 TGTAAATTTACCTATAACTTTAAAATAATCGGTTTTGAAATTCCACGTATCGATACTTTATACAT
260 TGTAAATTTACCTATTACTTTAAAATAATCGGTTTCGAAAGTCCAAGTATCGATACTTTATATAT
* * * * * *
806701 GTGCATCGATGCATTTTGCGTGCAAATTG-TTGAGAAGCATATTGGACTAAAAGTATCGATACCT
325 GTGTATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATACCT
806765 ATAT-ATAAC
390 ATATAATAAC
* * * * *
806774 GTATTGATACTTTATGTTTACACCTATTATCATTAAAC-CGATAAACTTTTACCGTTTACATTGT
1 GTATCGATACTTTATGTTTACGCCTATTATCATTAAACAAG-TAGATTTTTACCGTTTACATTGT
* * * *
806838 AAATTTACGTATTACTTTATAGTAATAGGTTTCAAAATTTCAAGTATCGATACTTTGTACATGTG
65 AAATTTACCTATTACTTTAAAGTAATAGGTTTCGAAATTACAAGTATCGATACTTTGTACATGTG
* * * * *
806903 TATCGATACTTTGTGCGTGCAAAATGTTTGAGATGCAAACTGAAATAAAAGTATCGATATCTATA
130 TATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACAGAAATAAAAGTATCGATACCTAT-
** *
806968 CAAAAAGTATTGATACTTGATGTTTACGCCTATTATCATTAAACCGATAGATTTTTACCGTTTAC
194 -AAAAAGTATCAATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTAC
* * *
807033 ATTGTAAATTTACCTATTACTTTAAAGTAATCGGTTTCGATAGTCCAAGTATTGATACTTTATAT
258 ATTGTAAATTTACCTATTACTTTAAAATAATCGGTTTCGAAAGTCCAAGTATCGATACTTTATAT
* * *
807098 ATGTGTATCGATACTTTTTGCGTGCAAATTGTTTGAGATGCATAATGGAATAAAAGTATCGATAC
323 ATGTGTATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATAC
807163 CTATATAATAAC
388 CTATATAATAAC
* * *
807175 -TATCAATACTTTATGTTT-TGCCTATTATCATTAAACAAGTAGATTTTTACTGTTTACATTGTA
1 GTATCGATACTTTATGTTTACGCCTATTATCATTAAACAAGTAGATTTTTACCGTTTACATTGTA
* * *
807238 AATTTACATATTACTTTATAGTAATAGGTTTTGAAATTACAAGTATCGATACTTTGTACATGTGT
66 AATTTACCTATTACTTTAAAGTAATAGGTTTCGAAATTACAAGTATCGATACTTTGTACATGTGT
* * * *
807303 ATCAATACTTTTTGCGTGTAAAATGTTTGAGAAGCATACAGGAATAAGAGTATCGATACCTATAC
131 ATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACAGAAATAAAAGTATCGATACCTATA-
* ** *
807368 GAAAACGTATCAATACTTGATGTTTACACCTATTATCATTAAATTGGTAGATTTTTACCATTTAC
195 -AAAA-GTATCAATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTAC
* * * * *
807433 ATTGTGAATTTACCTATTACTTTAAAGTAATTGGTTTCTAAAGTCTAAGTATCGATACTTTATAT
258 ATTGTAAATTTACCTATTACTTTAAAATAATCGGTTTCGAAAGTCCAAGTATCGATACTTTATAT
* * *
807498 ATGTGTATCAATACTTTTTCCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCAATAC
323 ATGTGTATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATAC
*
807563 CTATA-AAAAATC
388 CTATATAATAA-C
* * *
807575 GTATCGATACTTGATGTTTAAGCCTATTATCATTAAACAA-TAGATTTTTACCGTTTACATTATA
1 GTATCGATACTTTATGTTTACGCCTATTATCATTAAACAAGTAGATTTTTACCGTTTACATTGTA
* * * *
807639 AATTTTCCTATTACTTTAAAGTAATTA-GTTTCGAAAGT-CTAAGTATCGATACTTTATATATGT
66 AATTTACCTATTACTTTAAAGTAA-TAGGTTTCGAAATTAC-AAGTATCGATACTTTGTACATGT
** * * * * * * ** * *
807702 GCGTCGTTATTTTTTTGTGTACAAATTGTTTGAGATGCATAGTGGAATAAAAGTATCGATACATA
129 GTATCGATA-CTTTTTGCGTGCAAAATGTTTGAGAAGCATACAGAAATAAAAGTATCGATACCTA
*
807767 TATAATATA-TATCAATACTTGATGTTTACGCCTATTATCATTAAACTGGTAGATTTTTACCGTT
193 TA-AA-A-AGTATCAATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTT
* * * *
807831 TACATTGTAAATTTACCTATTACTTTAAAAAAAATAGGTTTCGAAGGTCTAAGTATCGATACTTT
255 TACATTGTAAATTTACCTATTACTTT-AAAATAATCGGTTTCGAAAGTCCAAGTATCGATACTTT
* * * * ** *
807896 ATTTATGTGTATGGATATTTTTTTGCGTGCAAAAT-TTTGAGATGCATACTGGAATATCAGTATT
319 ATATATGTGTATCGATA-CTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATC
807960 GATACCTATATAAT-A-
383 GATACCTATATAATAAC
* *** *
807975 GTATCGATACTTTATGTTTACTCCTATTATCATTAAATTGGTAGATTTTTACCGTTTACATTATA
1 GTATCGATACTTTATGTTTACGCCTATTATCATTAAACAAGTAGATTTTTACCGTTTACATTGTA
** * * * * *
808040 AATTTACCTATTTGTTAAAAGAAATAGGTTTCGAAATTATAAGGAT-AATACTTTGT
66 AATTTACCTATTACTTTAAAGTAATAGGTTTCGAAATTACAAGTATCGATACTTTGT
808096 TAAAGAAATT
Statistics
Matches: 1136, Mismatches: 158, Indels: 49
0.85 0.12 0.04
Matches are distributed among these distances:
392 1 0.00
393 159 0.14
396 3 0.00
397 2 0.00
398 3 0.00
399 289 0.25
400 274 0.24
401 236 0.21
402 151 0.13
403 18 0.02
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (399 bp):
GTATCGATACTTTATGTTTACGCCTATTATCATTAAACAAGTAGATTTTTACCGTTTACATTGTA
AATTTACCTATTACTTTAAAGTAATAGGTTTCGAAATTACAAGTATCGATACTTTGTACATGTGT
ATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACAGAAATAAAAGTATCGATACCTATAA
AAAGTATCAATACTTGATGTTTACGCCTATTATCATTAAACCGGTAGATTTTTACCGTTTACATT
GTAAATTTACCTATTACTTTAAAATAATCGGTTTCGAAAGTCCAAGTATCGATACTTTATATATG
TGTATCGATACTTTTTGCGTGCAAAATGTTTGAGAAGCATACTGGAATAAAAGTATCGATACCTA
TATAATAAC
Found at i:811169 original size:22 final size:22
Alignment explanation
Indices: 811141--811203 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
811131 GACATGTGAA
*
811141 ATATGTCCCGAAGGACCTATGC
1 ATATGTCCCGAAGGACCTATCC
* *
811163 ATGTGTCCCGATGGACCTATCC
1 ATATGTCCCGAAGGACCTATCC
*
811185 ATATGTCCCGAAGGGCCTA
1 ATATGTCCCGAAGGACCTA
811204 GGTAAACCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (22 bp):
ATATGTCCCGAAGGACCTATCC
Found at i:811223 original size:32 final size:32
Alignment explanation
Indices: 811177--811245 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 32
811167 GTCCCGATGG
* * *
811177 ACCTATCCATATGTCCCGAAGGGCCTAGGTAA
1 ACCTTTCCATATGTCCCGAAGGACATAGGTAA
811209 ACCTTTCCATATGTCCCGAAGGACATAGGTAA
1 ACCTTTCCATATGTCCCGAAGGACATAGGTAA
*
811241 CCCTT
1 ACCTT
811246 GATTCTTGGC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (32 bp):
ACCTTTCCATATGTCCCGAAGGACATAGGTAA
Found at i:813876 original size:41 final size:40
Alignment explanation
Indices: 813830--813912 Score: 103
Period size: 40 Copynumber: 2.0 Consensus size: 40
813820 ATCACAAATG
*
813830 TCAAATATGAAACCCTAATAAATTGTGCATTCAGTTTATGC
1 TCAAATATCAAACCC-AATAAATTGTGCATTCAGTTTATGC
* * * * *
813871 TCAAATTTCATACCCATTCAATTGTGCATTCATTTTATGC
1 TCAAATATCAAACCCAATAAATTGTGCATTCAGTTTATGC
813911 TC
1 TC
813913 CACAAATTTG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 24 0.67
41 12 0.33
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.39
Consensus pattern (40 bp):
TCAAATATCAAACCCAATAAATTGTGCATTCAGTTTATGC
Found at i:817725 original size:22 final size:22
Alignment explanation
Indices: 817699--817742 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
817689 ATTGAAAGAT
817699 TTAAAGTATTATTTATAATTTA
1 TTAAAGTATTATTTATAATTTA
817721 TTAAAGTATTATTTATAATTTA
1 TTAAAGTATTATTTATAATTTA
817743 ATAATAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
TTAAAGTATTATTTATAATTTA
Found at i:817812 original size:32 final size:33
Alignment explanation
Indices: 817737--817830 Score: 81
Period size: 32 Copynumber: 2.9 Consensus size: 33
817727 TATTATTTAT
* * *
817737 AATTTAATAATAAATAATT-ATTTATTATATTTA
1 AATTAAAT-ATAAATATTTAATTTATTATAATTA
**
817770 AA-TATTTATAAATATTTAATTTATT-TAATTA
1 AATTAAATATAAATATTTAATTTATTATAATTA
*
817801 AATTAAATAT-AATAATTTAA-GTATTATAAT
1 AATTAAATATAAAT-ATTTAATTTATTATAAT
817831 ATTTTATTAA
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
31 23 0.47
32 24 0.49
33 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (33 bp):
AATTAAATATAAATATTTAATTTATTATAATTA
Found at i:817830 original size:17 final size:18
Alignment explanation
Indices: 817808--817853 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
817798 TTAAATTAAA
817808 TATAATAATTTAAGT-AT
1 TATAATAATTTAAGTAAT
* *
817825 TATAAT-ATTTTATTAAT
1 TATAATAATTTAAGTAAT
817842 T-TAATAATTTAA
1 TATAATAATTTAA
817854 AATCTCATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
TATAATAATTTAAGTAAT
Found at i:818794 original size:201 final size:196
Alignment explanation
Indices: 818431--818864 Score: 541
Period size: 201 Copynumber: 2.2 Consensus size: 196
818421 CTTTTATTTG
* *
818431 GATTTTGTCAAATTGAAACACGTTTAGTC-AATTTCAACATGTTATATTGTCATGTATCGATACA
1 GATTTTGTCAAATTGAAACAGGTTTTGTCAAATTTCAACATGTTATATTGTCATGTATCGATACA
* *
818495 TGTGTCAAGGTATTGATACTTTATAGACACTATTATTGCAATTCTTTTAAATTCCTAAAGTACCG
66 TGTGTCAAGGTATCGATACTTTAGAGACACTATTATTGCAATTCTTTTAAATTCCTAAAGTACCG
* * *
818560 ATACTTTGGTACATATACTTATAAAAGTATCGATACAAATGTCAACCATTTCGATATCTCTTAAC
131 ATACTTTGGTACATATACTTATAAAAGTATCGATACAAATGTCAACAATTCCGATAGCTCTTAAC
818625 C
196 C
* * ** *
818626 GGTTTTGTCAAATTCAAATTGGTTTTGTCAAATTTTAACATGTTATATTGTCATGTATCGATACA
1 GATTTTGTCAAATTGAAACAGGTTTTGTCAAATTTCAACATGTTATATTGTCATGTATCGATACA
* * ** * * * *
818691 TGTGTGTAAGGTATCGATACTTTCGAGACGTTTTCCTTTTTTCATTTTCTTTTAAATTCCTACAA
66 TGTGT-CAAGGTATCGATACTTTAGAGAC--ACT-ATTATTGCA-ATTCTTTTAAATTCCTA-AA
* * *
818756 -TACCGATACTTTGGTACATATACTTATTAACA-TATCGATACAAATTTCAACAATTCCGGTAGC
125 GTACCGATACTTTGGTACATATACTTA-TAAAAGTATCGATACAAATGTCAACAATTCCGATAGC
*
818819 TCTTTACC
189 TCTTAACC
* * *
818827 GATTTTCTCAAATTGAAACCGGTTTTGTTAAATTTCAA
1 GATTTTGTCAAATTGAAACAGGTTTTGTCAAATTTCAA
818865 TCGGTTTTGT
Statistics
Matches: 200, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
195 23 0.12
196 39 0.19
197 19 0.09
199 1 0.00
200 6 0.03
201 106 0.53
202 6 0.03
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (196 bp):
GATTTTGTCAAATTGAAACAGGTTTTGTCAAATTTCAACATGTTATATTGTCATGTATCGATACA
TGTGTCAAGGTATCGATACTTTAGAGACACTATTATTGCAATTCTTTTAAATTCCTAAAGTACCG
ATACTTTGGTACATATACTTATAAAAGTATCGATACAAATGTCAACAATTCCGATAGCTCTTAAC
C
Found at i:818889 original size:20 final size:20
Alignment explanation
Indices: 818824--818900 Score: 73
Period size: 20 Copynumber: 3.9 Consensus size: 20
818814 GTAGCTCTTT
* * **
818824 ACCGATTTTCTCAAATTGAA
1 ACCGGTTTTGTCAAATTTCA
*
818844 ACCGGTTTTGTTAAATTTCA
1 ACCGGTTTTGTCAAATTTCA
* * *
818864 ATCGGTTTTGTCAATTTTTA
1 ACCGGTTTTGTCAAATTTCA
*
818884 ACCGGTTTAGTCAAATT
1 ACCGGTTTTGTCAAATT
818901 CATTACTTGT
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (20 bp):
ACCGGTTTTGTCAAATTTCA
Found at i:820444 original size:19 final size:19
Alignment explanation
Indices: 820422--820458 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
820412 TTAATTCACG
820422 ATTATAATTATAA-ATATTC
1 ATTATAATT-TAACATATTC
820441 ATTATAATTTAACATATT
1 ATTATAATTTAACATATT
820459 TTCTGTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTATAATTTAACATATTC
Found at i:827848 original size:21 final size:21
Alignment explanation
Indices: 827821--827933 Score: 113
Period size: 21 Copynumber: 5.5 Consensus size: 21
827811 GTTGCATTTA
827821 GCGTTGCGATAGTTGAAAATC
1 GCGTTGCGATAGTTGAAAATC
* * ** **
827842 GCATTGCGAT-TTTCCATTTC
1 GCGTTGCGATAGTTGAAAATC
827862 GCGTTGCGATAGTTGAAAATC
1 GCGTTGCGATAGTTGAAAATC
* ** **
827883 GCGTTGCGAT-TTTCCATTTC
1 GCGTTGCGATAGTTGAAAATC
827903 GCGTTGCGATAGTTGAAAATC
1 GCGTTGCGATAGTTGAAAATC
827924 GCGTTGCGAT
1 GCGTTGCGAT
827934 TTTCCATTTC
Statistics
Matches: 68, Mismatches: 22, Indels: 4
0.72 0.23 0.04
Matches are distributed among these distances:
20 29 0.43
21 39 0.57
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.35
Consensus pattern (21 bp):
GCGTTGCGATAGTTGAAAATC
Found at i:827860 original size:41 final size:41
Alignment explanation
Indices: 827815--828021 Score: 296
Period size: 41 Copynumber: 5.0 Consensus size: 41
827805 ATTCGCGTTG
* *
827815 CATTTAGCGTTGCGATAGTTGAAAATCGCATTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
827856 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
827897 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
*
827938 CATTTCGCGTTGCGATAGTCT-ACAAT-GTCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGT-TGAAAATCG-CGTTGCGATTTTC
*
827979 CAAATTTCGCGTTGCGATAGTCT-ACAAT-GTCGTTGCGATTTTC
1 C--ATTTCGCGTTGCGATAGT-TGAAAATCG-CGTTGCGATTTTC
828022 TAAATTCGTT
Statistics
Matches: 159, Mismatches: 3, Indels: 6
0.95 0.02 0.04
Matches are distributed among these distances:
40 1 0.01
41 117 0.74
42 1 0.01
43 40 0.25
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
Found at i:827868 original size:20 final size:20
Alignment explanation
Indices: 827840--827953 Score: 111
Period size: 20 Copynumber: 5.6 Consensus size: 20
827830 TAGTTGAAAA
*
827840 TCGCATTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* ** **
827860 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
827881 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* ** **
827901 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
827922 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
827942 TCGCGTTGCGAT
1 TCGCGTTGCGAT
827954 AGTCTACAAT
Statistics
Matches: 71, Mismatches: 21, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
20 41 0.58
21 30 0.42
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.38
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:827997 original size:43 final size:41
Alignment explanation
Indices: 827815--828064 Score: 282
Period size: 41 Copynumber: 6.0 Consensus size: 41
827805 ATTCGCGTTG
* * *
827815 CATTTAGCGTTGCGATAGT-TGAAAATCG-CATTGCGATTTTC
1 CATTTCGCGTTGCGATAGTCT-ACAAT-GTCGTTGCGATTTTC
*
827856 CATTTCGCGTTGCGATAGT-TGAAAATCG-CGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTCT-ACAAT-GTCGTTGCGATTTTC
*
827897 CATTTCGCGTTGCGATAGT-TGAAAATCG-CGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTCT-ACAAT-GTCGTTGCGATTTTC
827938 CATTTCGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTC
827979 CAAATTTCGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTC
1 C--ATTTCGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTC
* * *
828022 TAAATT--CGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTC
1 -CATTTCGCGTTGCGATAGTCTACA-ATGTCGTTGCGATTTTC
828063 CA
1 CA
828065 AATTCGTTGA
Statistics
Matches: 196, Mismatches: 7, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
40 19 0.10
41 133 0.68
42 4 0.02
43 40 0.20
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTC
Found at i:828690 original size:6 final size:6
Alignment explanation
Indices: 828658--828708 Score: 65
Period size: 6 Copynumber: 9.2 Consensus size: 6
828648 GCCGTCTGTC
*
828658 TCGT-G TCG-GG TCG-GG TCG-GG TCTTGG TCGTGG TCGTGG TCGTGG
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG
828702 TCGTGG T
1 TCGTGG T
828709 AATACGTGTC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
5 16 0.38
6 26 0.62
ACGTcount: A:0.00, C:0.18, G:0.49, T:0.33
Consensus pattern (6 bp):
TCGTGG
Found at i:828816 original size:19 final size:19
Alignment explanation
Indices: 828792--828857 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
828782 TTAACTACCA
828792 CAACGAATTTGGAAAATCG
1 CAACGAATTTGGAAAATCG
* * **
828811 CAACGACAACTGTAGACTATCG
1 CAACG--AA-TTTGGAAAATCG
828833 CAACGAATTTGGAAAATCG
1 CAACGAATTTGGAAAATCG
828852 CAACGA
1 CAACGA
828858 CAACTGTAGA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 19 0.53
20 2 0.06
21 2 0.06
22 13 0.36
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.18
Consensus pattern (19 bp):
CAACGAATTTGGAAAATCG
Found at i:828834 original size:22 final size:22
Alignment explanation
Indices: 828807--828878 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
828797 AATTTGGAAA
828807 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
* * **
828829 ATCGCAACG--AA-TTTGGAAA
1 ATCGCAACGACAACTGTAGACT
828848 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
828870 ATCGCAACG
1 ATCGCAACG
828879 CGATTTTCAA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 13 0.33
20 2 0.05
21 2 0.05
22 22 0.56
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.18
Consensus pattern (22 bp):
ATCGCAACGACAACTGTAGACT
Found at i:828849 original size:41 final size:41
Alignment explanation
Indices: 828792--828878 Score: 174
Period size: 41 Copynumber: 2.1 Consensus size: 41
828782 TTAACTACCA
828792 CAACGAATTTGGAAAATCGCAACGACAACTGTAGACTATCG
1 CAACGAATTTGGAAAATCGCAACGACAACTGTAGACTATCG
828833 CAACGAATTTGGAAAATCGCAACGACAACTGTAGACTATCG
1 CAACGAATTTGGAAAATCGCAACGACAACTGTAGACTATCG
828874 CAACG
1 CAACG
828879 CGATTTTCAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (41 bp):
CAACGAATTTGGAAAATCGCAACGACAACTGTAGACTATCG
Found at i:828893 original size:21 final size:21
Alignment explanation
Indices: 828867--828907 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
828857 ACAACTGTAG
828867 ACTATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGATTTTCA
828888 ACTATCGCAACGCGATTTTC
1 ACTATCGCAACGCGATTTTC
828908 CATTTCGCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (21 bp):
ACTATCGCAACGCGATTTTCA
Found at i:831141 original size:138 final size:137
Alignment explanation
Indices: 830883--831154 Score: 323
Period size: 138 Copynumber: 2.0 Consensus size: 137
830873 CAAAATGGAA
* * * * *
830883 ATTCATAAACTTATTGTGAATTCCATGGATGCACATATAGTGACGAAAGTACAAAAAGTAATGAT
1 ATTCAAAAACTCATTATGAATACCATGGATGCACATATAGTGACAAAAGTACAAAAAGTAATGAT
* * *
830948 ACAAAAATGCACCATTATGCATTAAATAAAATCGATCGATACCTTTTATACATAATTGTATAATG
66 ACAAAAATGCACCATTATGCATTAAACAAAATCGATCGATACCTATTACACATAA-TGTATAATG
831013 AAATGGTG
130 AAATGGTG
* * * * * *
831021 ATTCAAAAACTCATTATGAATACCAT-GATTGCACATCTAGTGCCAAAAGTACACATAGTACTGT
1 ATTCAAAAACTCATTATGAATACCATGGA-TGCACATATAGTGACAAAAGTACAAAAAGTAATGA
** * * **
831085 TATGAAAATGCACCATTATGCATTACACAAAATCGATCGATAACC-ATTACATATAATGTATGTT
65 TACAAAAATGCACCATTATGCATTAAACAAAATCGATCGAT-ACCTATTACACATAATGTATAAT
831149 GAAATG
129 GAAATG
831155 CACTTATGAC
Statistics
Matches: 112, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
137 14 0.12
138 95 0.85
139 3 0.03
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (137 bp):
ATTCAAAAACTCATTATGAATACCATGGATGCACATATAGTGACAAAAGTACAAAAAGTAATGAT
ACAAAAATGCACCATTATGCATTAAACAAAATCGATCGATACCTATTACACATAATGTATAATGA
AATGGTG
Found at i:848576 original size:17 final size:17
Alignment explanation
Indices: 848554--848587 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
848544 GTATGTCTTG
848554 ATGTACTATTATAGACC
1 ATGTACTATTATAGACC
848571 ATGTACTATTATAGACC
1 ATGTACTATTATAGACC
848588 CTTTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (17 bp):
ATGTACTATTATAGACC
Done.