Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002891.1 Hibiscus syriacus cultivar Beakdansim tig00005975_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80330

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3252--3329
22
3.6
22
80
1
95
24
20
24
30
1.98
23944--24015
24
3.0
24
76
8
74
48
16
12
22
1.79
28431--28537
24
4.5
24
72
4
90
48
16
16
17
1.81
29672--29731
27
2.2
28
82
14
72
26
11
11
50
1.73
34277--34314
20
1.9
20
88
0
58
28
7
5
57
1.49
46613--46661
21
2.3
21
85
0
62
28
6
46
18
1.72
48750--48794
22
2.1
22
91
4
74
46
15
0
37
1.46
49315--50050
367
2.0
364
94
1
1276
38
20
16
24
1.93
50654--50685
15
2.1
15
94
0
55
43
21
6
28
1.77
51311--51384
15
5.3
14
70
15
55
52
4
0
43
1.20
51316--51399
41
2.0
42
93
2
143
50
5
1
42
1.34
51392--51431
20
2.0
21
90
5
64
37
0
2
60
1.11
51396--51449
28
1.9
28
85
7
74
37
0
1
61
1.07
55165--55313
4
37.8
4
72
12
85
69
1
6
22
1.18
55171--55305
11
11.8
12
71
12
63
69
1
5
22
1.18
55235--55323
45
2.0
46
82
10
112
74
1
2
22
1.00
55265--55313
11
4.6
11
80
16
59
71
2
2
24
1.07
56221--56311
46
2.0
45
85
6
121
26
19
24
29
1.98
58469--58507
13
3.1
13
88
3
53
48
2
7
41
1.45
64503--64541
20
2.0
20
89
0
60
20
15
33
30
1.94
65996--66100
39
2.7
39
81
12
101
47
5
3
42
1.45
66064--66126
27
2.4
25
78
7
63
46
9
6
38
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66114--66138
12
2.1
12
100
0
50
44
8
8
40
1.63
66087--66362
73
3.8
71
81
10
289
44
7
4
43
1.52
66087--66450
37
9.8
37
82
8
291
43
8
4
42
1.56
66221--66247
13
2.1
13
100
0
54
48
7
7
37
1.59
66087--66369
37
7.8
37
79
9
296
44
7
4
43
1.52
66353--66447
39
2.4
39
98
0
181
44
11
6
37
1.66
66988--68277
168
7.7
168
87
2
1716
25
19
23
31
1.98
72228--72486
4
64.5
4
68
21
62
71
1
6
20
1.16
72230--72485
15
18.1
14
64
24
67
72
1
6
19
1.15
72281--72339
9
6.4
9
74
21
52
74
1
1
22
1.00
72275--72471
16
11.6
17
69
15
72
74
1
6
18
1.11
72405--72466
22
2.7
23
73
22
60
77
1
6
14
1.04
72346--72476
55
2.3
55
80
6
147
75
1
8
14
1.10
72277--72485
15
13.5
15
70
19
76
73
1
5
19
1.11
72395--72512
59
2.0
60
81
9
143
73
1
5
19
1.10
72489--72539
15
3.3
15
78
10
50
70
3
7
17
1.27
72451--72543
41
2.3
39
76
8
96
70
2
4
22
1.15
73405--73456
3
17.7
3
96
4
97
65
0
0
34
0.93
73532--73589
25
2.4
24
85
5
73
46
8
6
37
1.61
73578--73602
12
2.1
12
100
0
50
44
8
8
40
1.63
73553--73819
35
7.8
32
78
16
229
44
6
3
45
1.46
73587--73862
35
7.9
34
76
16
157
44
7
2
45
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74705--74767
31
2.0
31
100
0
126
41
9
11
38
1.73
75344--75672
69
4.9
66
78
13
291
43
3
10
43
1.54
75391--75672
33
8.3
32
83
11
325
44
2
9
42
1.51
75391--75672
69
4.2
67
83
11
346
44
2
9
42
1.51
75391--75672
102
2.8
102
88
6
405
44
2
9
42
1.51
75391--75691
35
8.8
34
81
13
316
44
2
10
42
1.53
75411--75720
69
4.6
66
82
11
221
43
3
10
43
1.55
75743--75783
4
10.5
4
80
15
50
26
2
0
70
0.99
75757--75783
14
1.9
14
100
0
54
25
0
0
74
0.83
76964--77013
23
2.2
23
82
7
57
28
10
2
60
1.40
76995--77032
20
2.0
19
90
10
60
21
7
5
65
1.38

Tables:   1

The End!