genome.fa.s2892.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002892.1 Hibiscus syriacus cultivar Beakdansim tig00005976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118533

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5673--5764	45	2.0	46	91	2	150	25	17	26	31	1.97
6775--6815	21	2.0	21	90	9	66	21	31	29	17	1.96
7077--7101	12	2.1	12	100	0	50	40	24	0	36	1.55
9247--9291	22	2.0	22	95	0	81	24	35	24	15	1.94
10016--10140	31	4.0	32	79	9	132	32	21	19	27	1.97
10016--10139	63	2.0	62	85	7	171	31	21	19	27	1.97
11676--11716	21	2.0	21	90	9	66	21	29	29	19	1.98
11979--12003	12	2.1	12	100	0	50	40	24	0	36	1.55
12584--12630	22	2.0	22	84	12	58	53	12	2	31	1.51
12459--13907	733	2.0	727	91	3	2336	31	15	13	39	1.86
13888--13946	24	2.5	24	88	0	82	6	23	25	44	1.78
15370--15403	7	4.9	7	85	0	50	44	35	2	17	1.64
18447--18503	28	2.0	28	82	0	69	28	17	22	31	1.97
19817--19957	60	2.4	58	83	4	167	31	16	6	45	1.72
19817--19970	58	2.6	59	81	6	177	32	16	5	44	1.72
26201--26246	2	23.0	2	100	0	92	50	0	0	50	1.00
29319--29384	29	2.3	29	84	5	80	50	6	3	40	1.43
32921--32958	13	2.7	14	84	12	51	2	21	2	73	1.07
32949--32991	18	2.5	17	84	3	50	13	13	4	67	1.38
40388--40448	17	3.4	18	77	11	54	44	0	1	54	1.10
40367--40455	34	2.7	33	77	10	85	39	0	2	58	1.11
40596--40649	17	3.2	17	72	0	54	31	0	3	64	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45274--45322	19	2.7	17	84	9	53	26	18	30	24	1.98
45274--45482	64	3.2	64	79	9	189	27	15	25	31	1.96
47968--48047	24	3.5	23	75	14	85	28	22	25	23	1.99
47945--48067	44	2.8	42	72	12	113	25	20	27	26	1.99
63558--63677	64	1.9	64	89	0	186	27	15	25	31	1.96
63620--63669	19	2.7	18	82	11	66	26	16	34	24	1.95
66170--66256	35	2.5	34	80	12	97	54	9	8	28	1.61
69330--69407	35	2.2	34	84	6	102	42	15	0	42	1.47
69402--69476	35	2.1	35	87	4	107	36	0	20	44	1.52
75370--75410	8	5.2	8	82	5	57	34	0	29	36	1.58
75478--76205	126	5.8	126	97	0	1390	22	25	19	32	1.97
75478--76205	251	2.9	252	98	0	1417	22	25	19	32	1.97
76592--76691	33	3.0	34	83	2	139	39	3	4	54	1.35
77210--77303	21	4.5	21	92	5	129	20	26	35	18	1.95
77307--77354	21	2.3	21	85	0	60	22	12	39	25	1.89
79072--79155	32	2.6	32	82	3	105	60	2	0	36	1.10
79067--79146	34	2.4	34	83	6	110	62	1	0	36	1.03
79099--79178	34	2.3	34	81	12	92	65	5	0	30	1.14
81882--81927	18	2.5	19	79	13	60	60	10	0	28	1.30
81891--81925	17	1.9	19	88	11	56	60	14	0	25	1.35
83914--83990	40	1.9	40	83	0	100	25	19	33	20	1.96
83819--84111	134	2.2	134	85	3	383	23	17	32	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84237--84309	35	2.1	35	94	0	128	32	10	16	39	1.83
84285--84523	66	3.6	66	77	9	188	44	13	10	30	1.78
84467--84526	30	1.9	32	93	6	106	45	11	13	30	1.79
84564--84701	36	3.8	36	81	7	147	36	13	18	31	1.89
84640--85123	212	2.3	207	83	7	605	39	11	17	31	1.85
84640--85088	105	4.3	105	87	4	602	39	11	17	31	1.85
85056--85253	36	5.6	35	76	6	184	37	12	17	32	1.87
85062--85267	71	2.9	70	78	7	220	34	12	17	35	1.88
85062--85253	70	2.7	70	81	5	226	35	12	17	33	1.88
86778--86849	16	4.8	15	77	19	62	1	19	6	72	1.15
88145--88183	20	2.0	20	89	0	60	56	12	15	15	1.68
96065--96117	19	2.8	18	85	8	61	33	13	1	50	1.52
98129--98266	44	3.2	44	69	15	144	32	21	12	33	1.91
98129--98308	84	2.1	84	92	2	299	33	20	12	33	1.90
100314--100356	6	7.2	6	100	0	86	48	0	0	51	1.00
100562--100596	2	17.5	2	100	0	70	48	0	0	51	1.00
104784--104878	47	2.0	47	81	4	111	34	12	13	38	1.83
107254--107335	2	41.0	2	100	0	164	50	0	0	50	1.00
109515--109555	21	1.9	22	90	5	66	29	14	24	31	1.95
110813--110916	42	2.5	43	82	4	124	33	19	22	25	1.97
110489--111301	258	3.1	259	88	1	1155	35	17	15	32	1.91
112372--112396	13	1.9	13	100	0	50	64	0	8	28	1.22

Tables:   1

The End!