Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002893.1 Hibiscus syriacus cultivar Beakdansim tig00005978_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52666

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8677--8764
21
4.2
21
88
2
133
21
37
20
20
1.94
8677--8764
42
2.1
41
93
2
149
21
37
20
20
1.94
8918--8957
20
1.9
22
90
10
66
35
27
10
27
1.89
9145--9200
28
2.0
28
100
0
112
28
14
17
39
1.89
10584--10617
2
17.0
2
88
11
52
50
0
2
47
1.16
10668--10694
2
13.5
2
100
0
54
51
0
0
48
1.00
12895--12944
21
2.4
21
93
0
82
24
40
16
20
1.91
14289--14340
19
2.7
18
74
11
50
57
3
11
26
1.51
14289--14341
20
2.7
19
76
2
52
58
3
11
26
1.49
15453--15498
21
2.1
22
88
4
67
34
10
6
47
1.64
33448--33584
51
2.7
50
78
5
125
28
29
25
16
1.97
35132--35472
43
8.0
43
80
5
280
37
19
17
25
1.93
35127--35478
86
4.1
86
79
3
345
36
20
17
25
1.94
35135--35439
128
2.4
129
80
7
332
37
19
18
24
1.94
35127--35478
171
2.1
172
81
3
415
36
20
17
25
1.94
35192--35478
128
2.2
129
80
4
321
35
20
17
26
1.95
36501--36538
3
12.7
3
100
0
76
68
0
0
31
0.90
39169--39324
81
1.9
82
85
3
217
33
16
17
32
1.93
42728--43051
156
2.1
154
90
6
503
21
16
6
54
1.66
42689--43051
156
2.3
154
87
10
494
21
16
6
55
1.62
43024--43079
3
18.7
3
79
20
64
33
0
1
64
1.04
43020--43085
29
2.3
29
85
15
100
30
3
1
65
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43141--43202
32
1.9
31
83
6
79
20
3
3
72
1.13
43217--43344
29
4.4
29
76
9
118
14
5
2
77
1.05
43259--43350
25
3.7
25
76
13
91
13
5
3
78
1.05
44340--44381
16
2.7
16
92
3
68
26
7
35
30
1.83
45992--46192
95
2.1
95
89
0
303
35
16
15
31
1.91
47104--47397
64
4.7
64
82
2
328
36
20
12
30
1.90
47105--47397
128
2.3
124
84
4
365
36
20
12
30
1.90
47474--48112
120
5.3
121
80
2
714
33
25
16
24
1.96
47481--48112
241
2.6
241
86
2
878
33
25
16
24
1.96
48117--49378
84
15.0
84
81
3
1184
33
23
18
24
1.96
48117--49436
252
5.2
251
82
2
1396
33
22
18
25
1.96
51052--51084
8
4.2
8
96
3
59
24
0
0
75
0.80
51034--51084
16
3.3
15
84
13
59
19
5
0
74
1.02
51129--51472
146
2.3
146
83
10
432
21
17
6
54
1.64
51450--51506
8
7.4
8
77
16
50
35
1
1
61
1.17
51543--51595
11
4.7
11
77
11
54
18
3
1
75
1.05
51632--51707
14
5.8
13
76
11
66
10
9
2
77
1.08
51632--51714
13
6.4
12
75
19
69
10
9
2
77
1.09

Tables:   1

The End!