Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002894.1 Hibiscus syriacus cultivar Beakdansim tig00005980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55425

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3850--3892
22
2.0
22
86
9
61
46
2
2
48
1.27
4105--4159
17
3.3
17
76
5
58
43
0
5
50
1.25
4728--4770
22
2.0
22
85
0
59
65
4
2
27
1.25
6488--6532
13
3.5
13
84
3
56
75
0
15
8
1.03
7865--7943
24
3.5
24
70
16
78
17
1
27
53
1.52
7847--7920
19
3.6
19
70
16
58
18
2
24
54
1.57
7834--7943
43
2.6
43
94
0
193
18
1
26
53
1.54
8551--8676
60
2.1
60
82
8
150
30
18
16
34
1.93
8813--8867
28
2.0
28
85
7
76
27
7
21
43
1.79
15101--15139
20
2.0
20
90
10
62
56
10
5
28
1.54
17027--17057
2
15.5
2
100
0
62
48
0
0
51
1.00
28844--29326
113
4.2
113
81
11
570
32
12
11
43
1.77
29567--29771
87
2.4
87
88
0
293
33
14
10
41
1.80
30089--30442
112
3.2
112
94
0
609
31
11
13
43
1.80
30627--30833
87
2.4
87
87
0
279
33
12
10
43
1.77
32320--32369
23
2.2
23
85
0
64
30
12
14
44
1.81
32304--32508
87
2.4
87
89
0
311
31
11
11
45
1.76
33184--33228
23
2.0
23
86
0
63
40
15
8
35
1.79
33082--33340
87
3.0
87
90
0
374
32
10
11
45
1.75
39376--39414
20
2.0
20
90
10
62
56
10
5
28
1.54
41319--41391
2
37.0
2
97
2
139
49
0
0
50
1.00
41753--41798
23
1.9
24
82
8
58
45
8
6
39
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52233--52858
314
2.0
307
85
5
839
39
9
11
39
1.74

Tables:   1

The End!