genome.fa.s2895.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002895.1 Hibiscus syriacus cultivar Beakdansim tig00005982_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83010

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426--474	22	2.2	22	82	10	55	55	6	4	34	1.44
1335--1391	23	2.6	23	94	5	100	29	12	33	24	1.92
16622--16737	44	2.7	42	73	11	101	28	22	18	30	1.98
16846--16942	42	2.3	42	92	0	158	27	19	20	31	1.97
16846--17073	42	5.2	42	71	13	154	28	18	22	30	1.97
16981--17005	13	1.9	13	100	0	50	32	24	20	24	1.98
16996--17199	42	5.0	42	69	20	144	28	16	23	31	1.96
16858--17127	135	2.0	135	89	1	416	30	17	22	28	1.97
17581--17896	55	5.8	55	87	5	374	28	17	25	28	1.98
22646--22696	20	2.7	19	81	6	59	25	25	17	31	1.97
25127--25207	37	2.2	37	81	0	99	14	6	37	41	1.71
25121--25191	37	1.9	37	91	0	115	14	7	36	42	1.72
25235--25269	18	1.9	18	100	0	70	62	17	11	8	1.52
25800--25850	18	2.9	18	85	2	68	27	31	7	33	1.85
26539--26589	18	2.5	19	78	18	50	45	1	1	50	1.24
38856--38882	7	3.9	7	100	0	54	70	0	14	14	1.17
39500--39547	25	2.0	24	84	8	62	41	4	6	47	1.48
40376--40625	59	4.2	59	81	2	248	58	10	14	17	1.63
40362--40625	30	8.9	30	81	2	246	57	10	14	16	1.64
41446--41762	149	2.1	149	98	0	607	12	29	13	44	1.80
42360--42407	21	2.3	21	100	0	96	50	4	8	37	1.52
43875--43979	52	2.0	52	98	0	201	22	24	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54367--54563	80	2.5	80	89	1	306	31	17	21	28	1.96
54810--55121	53	5.9	53	88	2	416	30	20	26	21	1.98
65409--65605	80	2.5	80	91	1	315	30	17	22	28	1.97
65852--66163	53	5.9	53	87	2	407	30	20	26	21	1.98
73836--73875	3	13.3	3	89	10	64	65	0	0	35	0.93
74198--74482	113	2.5	113	91	0	471	26	19	15	38	1.92
75834--75867	17	2.1	16	88	5	50	14	8	0	76	1.01

Tables:   1

The End!