genome.fa.s2896.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002896.1 Hibiscus syriacus cultivar Beakdansim tig00005985_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109421

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1442--1509	27	2.6	27	95	4	122	30	11	16	41	1.84
5560--5596	19	1.9	19	88	0	56	32	27	16	24	1.96
5682--5734	20	2.7	20	96	0	97	39	18	20	20	1.92
5723--5773	21	2.4	21	90	0	75	33	29	21	15	1.94
5765--5805	20	2.0	20	95	0	73	26	26	19	26	1.99
6626--6672	24	2.0	24	95	0	85	27	21	17	34	1.95
6873--6909	14	2.6	14	91	4	56	51	21	21	5	1.68
8947--8981	18	1.9	18	88	0	52	54	22	2	20	1.58
9159--9413	20	13.7	20	74	14	197	36	22	20	21	1.96
9192--9396	54	3.8	54	91	0	322	36	21	20	20	1.95
9159--9340	74	2.5	74	75	7	190	36	22	19	21	1.95
9312--9446	34	3.8	34	75	12	119	37	22	19	21	1.95
9566--9623	30	1.9	30	96	0	107	51	10	6	31	1.62
11000--11078	21	3.7	22	74	14	76	22	20	35	21	1.96
11006--11107	42	2.4	42	77	3	107	24	18	34	22	1.96
11578--11621	20	2.2	20	100	0	88	52	22	11	13	1.72
11588--11661	20	3.7	20	79	0	67	43	22	14	18	1.87
11724--11776	20	2.7	20	85	5	72	18	20	26	33	1.96
11695--11826	34	3.7	34	75	11	138	20	21	21	35	1.96
11746--11792	20	2.3	20	88	0	67	14	21	25	38	1.92
11695--11845	74	2.0	74	90	0	239	20	21	21	36	1.95
11958--12019	31	2.0	31	87	9	90	51	17	8	22	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12208--12254	21	2.2	22	77	11	53	29	34	17	19	1.94
13841--13896	20	2.8	20	91	0	85	50	21	16	12	1.78
13844--13919	20	3.8	20	83	0	80	44	21	17	17	1.86
13884--13964	33	2.4	34	89	4	128	37	24	22	16	1.93
14298--14342	22	2.1	21	84	8	56	22	11	42	24	1.86
14308--14355	22	2.2	22	96	0	87	20	12	43	22	1.86
14525--14569	20	2.2	20	92	0	72	24	22	28	24	1.99
14599--14652	21	2.6	20	85	8	72	33	20	18	27	1.96
14616--14664	21	2.4	21	86	10	66	38	20	20	20	1.93
14697--14733	19	1.9	19	88	0	56	21	13	29	35	1.92
15931--15967	2	18.5	2	100	0	74	51	0	0	48	1.00
16844--16894	25	2.1	24	85	3	66	39	11	3	45	1.59
17426--17484	11	5.2	11	74	8	55	55	1	0	42	1.09
17433--17484	23	2.3	23	86	6	70	57	1	0	40	1.10
18290--18339	22	2.3	22	86	6	66	44	2	4	50	1.32
18552--18591	20	2.0	20	95	0	71	55	7	15	22	1.65
20849--20875	6	4.5	6	100	0	54	66	0	0	33	0.92
31686--31718	16	2.0	17	88	5	50	30	6	30	33	1.82
53056--53094	20	2.0	20	100	0	78	38	0	10	51	1.36
58340--58367	11	2.5	11	100	0	56	60	0	0	39	0.97
58494--58702	7	30.3	7	69	11	101	22	0	33	43	1.57
58494--58689	34	5.7	34	81	5	216	21	0	34	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62044--62096	21	2.5	21	81	6	72	20	26	18	33	1.96
62086--62199	21	5.5	21	73	7	74	40	18	20	21	1.92
62086--62221	62	2.2	60	88	6	157	38	19	19	22	1.93
62123--62281	41	3.9	41	75	9	180	37	23	18	20	1.94
62098--62255	82	1.9	82	88	3	237	39	20	18	21	1.92
62188--62342	20	7.7	20	87	4	168	30	26	18	23	1.98
62123--62301	61	2.9	61	84	5	193	35	24	18	21	1.95
63083--63136	24	2.2	24	90	0	81	22	16	20	40	1.91
63311--63335	12	2.1	12	100	0	50	72	0	28	0	0.86
65635--65678	20	2.2	20	88	4	63	36	20	22	20	1.95
65642--65792	19	8.7	19	69	21	89	43	19	24	11	1.85
65662--65788	33	3.8	33	95	0	218	44	18	24	11	1.83
65684--65736	14	3.4	14	72	22	52	43	20	26	9	1.82
65803--65896	33	2.8	33	98	0	179	10	23	21	44	1.83
65798--65896	19	5.7	19	72	22	101	10	23	21	45	1.81
66003--66040	14	2.7	15	88	12	62	47	18	0	34	1.49
67389--67455	21	3.2	21	68	4	55	19	20	35	23	1.95
67803--67841	19	2.1	19	95	0	69	20	38	15	25	1.92
67789--67951	65	2.5	65	85	3	222	30	26	15	26	1.96
73609--73664	22	2.7	21	83	10	62	30	23	17	28	1.97
75193--75236	21	2.1	21	86	0	61	9	36	15	38	1.80
76267--76305	19	2.1	19	95	0	69	20	38	15	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76253--76415	65	2.5	65	85	3	222	30	26	15	26	1.96
77552--77856	94	3.3	94	94	3	512	46	19	12	21	1.83
79551--79613	20	3.2	20	80	8	74	47	15	23	12	1.80
79577--79670	33	2.8	33	91	1	143	44	20	22	12	1.85
80279--80391	20	5.7	20	87	0	172	20	20	20	38	1.93
80281--80391	40	2.8	40	98	0	213	19	20	20	38	1.93
80388--80443	20	2.7	21	77	5	60	42	14	21	21	1.88
80463--80514	20	2.5	21	87	3	70	21	23	17	38	1.93
80281--80517	40	5.8	41	78	8	191	25	18	20	35	1.96
87990--88203	85	2.5	85	90	3	333	30	21	16	32	1.95
88260--88308	2	24.5	2	91	0	80	51	0	2	46	1.12
94311--94352	15	2.7	15	88	3	57	9	21	11	57	1.63
98770--98815	21	2.2	21	88	0	65	36	10	2	50	1.50
104343--104371	7	4.1	7	100	0	58	27	0	0	72	0.85

Tables:   1

The End!