genome.fa.s2898.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002898.1 Hibiscus syriacus cultivar Beakdansim tig00005987_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53252

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--462	105	4.4	105	94	3	819	21	19	25	33	1.97
1--462	208	2.2	210	95	3	828	21	19	25	33	1.97
10647--10680	10	3.4	10	87	0	50	73	0	5	20	1.04
13531--13575	12	3.7	12	82	11	56	57	0	0	42	0.98
15935--16049	29	3.9	29	79	2	122	20	41	25	13	1.88
15999--16142	30	5.1	30	74	18	130	23	47	18	11	1.80
16030--16143	20	5.7	20	76	13	101	24	47	17	10	1.79
16050--16142	30	3.1	30	88	0	150	23	47	18	10	1.80
16791--16834	21	2.1	21	91	0	70	29	0	15	54	1.42
16811--16864	28	1.9	28	96	0	99	29	0	12	57	1.36
19924--19961	10	3.9	10	90	10	53	42	0	15	42	1.47
19936--20124	60	3.4	59	79	18	233	40	0	13	46	1.43
20071--20140	25	3.1	22	79	16	63	38	0	11	50	1.39
20006--20120	48	2.3	49	92	2	187	40	0	11	47	1.39
20092--20139	14	3.6	14	81	16	66	35	0	16	47	1.47
22443--22518	30	2.5	31	77	16	86	50	10	1	38	1.45
22697--22736	21	1.9	21	100	0	80	57	15	0	27	1.38
22764--22818	18	3.4	18	65	31	52	52	9	0	38	1.33
22838--22911	38	2.0	37	87	12	109	50	9	0	40	1.35
22932--22996	28	2.3	29	82	10	82	46	15	1	36	1.55
23509--23574	33	2.0	33	93	0	114	15	19	37	27	1.92
23563--23588	10	2.6	10	100	0	52	11	19	50	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23608--23723	29	4.0	28	87	2	133	13	28	40	17	1.88
23603--23720	58	2.0	58	88	3	175	12	27	41	18	1.87
29704--29762	31	1.9	31	92	0	100	40	6	10	42	1.65
29787--29829	22	2.0	22	95	0	77	51	11	0	37	1.39
29789--29837	22	2.2	22	85	3	62	55	12	0	32	1.37
29777--29887	54	2.0	54	82	7	132	54	11	0	34	1.37
29849--29916	22	3.1	23	74	14	63	54	17	0	27	1.43
29780--30032	133	1.9	129	90	3	398	52	11	0	35	1.38
29889--29994	32	3.7	31	75	24	124	51	14	0	33	1.42
29920--29962	22	2.0	22	100	0	86	51	13	0	34	1.42
29922--29970	22	2.2	22	88	3	71	55	14	0	30	1.40
29872--30016	54	2.7	54	95	1	256	51	13	0	35	1.41
29974--30049	22	3.5	22	92	0	125	50	7	0	42	1.31
30037--30096	15	4.0	15	91	0	93	48	0	0	51	1.00
30037--30096	30	2.0	30	96	0	111	48	0	0	51	1.00
34177--34256	21	3.9	21	72	9	56	43	21	13	21	1.87
34304--34381	40	2.0	40	100	0	156	20	23	23	33	1.97
34283--34373	21	4.4	21	84	5	132	19	23	25	31	1.98
34283--34386	21	5.0	21	77	4	86	21	24	23	31	1.98
34768--34809	19	2.2	19	95	0	75	30	26	4	38	1.77
34814--34869	20	2.8	20	86	8	69	26	21	21	30	1.98
35149--35203	24	2.3	23	76	11	58	49	14	9	27	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48914--48952	18	2.2	18	85	0	51	25	38	5	30	1.78
48959--49381	87	4.8	87	76	9	327	25	36	8	28	1.85
49239--49354	45	2.6	45	83	5	153	30	35	7	26	1.85

Tables:   1

The End!