genome.fa.s29.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000029.1 Hibiscus syriacus cultivar Beakdansim tig00000049_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101145

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470--514	23	2.0	23	86	8	65	48	0	6	44	1.29
2382--2429	23	2.1	23	84	0	60	16	20	20	41	1.90
10275--10311	17	2.2	17	90	9	58	35	0	0	64	0.94
10274--10321	23	2.0	24	84	8	62	35	0	2	62	1.07
13021--13122	52	2.0	52	94	3	179	26	6	3	62	1.38
19296--19770	181	2.6	182	87	4	672	41	14	16	28	1.87
19691--19729	20	2.0	20	85	10	53	53	7	15	23	1.67
21513--21572	24	2.8	22	76	23	65	48	0	5	46	1.24
21944--21987	21	2.1	21	86	0	61	40	6	31	20	1.79
22021--22086	33	2.0	33	87	0	96	33	0	43	22	1.54
23223--23267	17	2.6	17	73	13	56	31	8	8	51	1.64
23778--23823	19	2.4	19	96	0	83	32	0	8	58	1.28
24111--25206	201	5.6	201	89	5	1668	37	14	16	31	1.89
24483--24852	180	2.1	179	93	0	562	37	14	16	31	1.89
24283--25206	380	2.4	381	90	4	1413	37	14	16	31	1.89
26656--26691	18	2.0	18	88	0	54	47	11	22	19	1.80
29736--30440	200	3.5	199	80	8	682	39	14	16	29	1.88
30546--30610	23	2.8	23	95	0	121	36	21	7	33	1.82
30818--30844	2	13.5	2	100	0	54	48	0	0	51	1.00
36407--36451	21	2.2	21	88	4	65	48	4	4	42	1.43
39516--39550	17	2.1	17	94	0	61	57	0	11	31	1.34
39518--39556	17	2.3	17	86	0	51	56	5	10	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43561--43588	13	2.2	13	100	0	56	50	14	7	28	1.69
43622--43666	18	2.5	18	96	0	81	44	15	6	33	1.73
47686--47730	18	2.5	18	96	0	81	44	15	6	33	1.73
50348--50390	21	2.0	22	81	4	52	51	2	9	37	1.47
59864--59904	21	2.0	21	90	0	64	24	7	4	63	1.40
59952--59986	14	2.6	13	91	8	61	22	0	2	74	0.95
71436--71746	67	4.6	66	84	7	340	28	19	12	39	1.88
71436--71746	133	2.3	134	83	9	373	28	19	12	39	1.88
71625--71820	36	5.4	36	93	0	320	26	21	13	38	1.90
71700--71800	21	5.4	21	60	26	64	25	22	11	39	1.88
73410--73449	21	1.9	21	84	0	53	20	10	5	65	1.42
73493--73531	18	2.2	18	86	9	53	25	0	2	71	0.98
77281--77493	105	2.0	105	100	0	426	29	19	16	33	1.94
79388--79435	23	2.1	23	96	0	87	39	45	4	10	1.58
83456--83503	7	6.7	7	85	4	69	47	0	0	52	1.00
83445--83503	14	4.1	14	82	8	66	45	0	1	52	1.10
83469--83520	22	2.4	22	87	6	70	51	0	0	48	1.00
95311--95396	23	3.7	23	84	3	102	17	25	24	32	1.97
98064--98106	17	2.6	16	78	7	50	34	0	25	39	1.56
98960--99002	22	2.0	22	90	0	68	27	25	27	18	1.98
100383--100466	23	3.7	23	80	3	89	17	25	22	34	1.96

Tables:   1

The End!