genome.fa.s290.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000290.1 Hibiscus syriacus cultivar Beakdansim tig00000534_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176468

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766--799	16	2.1	17	88	5	52	47	5	2	44	1.42
1090--1872	407	1.9	404	82	8	982	43	8	9	38	1.67
3653--3731	40	2.0	41	97	2	151	29	6	22	41	1.78
9537--9566	15	2.0	15	93	0	51	33	23	20	23	1.97
12389--12438	23	2.1	24	92	7	84	32	26	20	22	1.98
16755--16805	23	2.2	23	89	6	77	33	21	15	29	1.94
23248--23277	15	2.0	15	93	0	51	33	23	20	23	1.97
24005--24055	23	2.2	23	82	0	66	25	27	19	27	1.99
24483--24530	23	2.1	23	100	0	96	31	8	8	52	1.61
27742--27783	15	2.6	17	82	17	54	45	0	11	42	1.41
33138--33165	14	2.0	14	100	0	56	14	21	14	50	1.78
34925--35025	51	2.0	51	92	0	166	32	19	11	35	1.89
37250--37277	14	2.0	14	100	0	56	14	21	14	50	1.78
38712--38749	16	2.5	15	88	12	60	63	13	7	15	1.51
38818--38849	16	2.0	16	93	0	55	62	21	6	9	1.47
38831--38860	10	3.0	10	100	0	60	60	20	10	10	1.57
39949--40014	24	2.8	24	92	0	114	48	24	18	9	1.76
39948--39997	14	3.9	14	77	20	63	48	24	20	8	1.76
39941--40003	14	4.8	14	71	15	53	49	22	17	11	1.78
40340--40364	13	1.9	13	100	0	50	80	0	0	20	0.72
49477--49533	24	2.3	24	82	8	71	33	22	24	19	1.97
49501--49626	23	5.3	23	75	8	85	33	22	25	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49726--49829	45	2.3	45	85	3	129	38	20	4	36	1.74
59819--59900	21	3.9	21	74	12	69	14	25	36	23	1.93
76361--76399	16	2.4	16	91	0	60	20	35	0	43	1.52
77600--78104	54	9.4	54	85	3	561	26	19	19	34	1.95
77600--78104	162	3.1	161	83	3	638	26	19	19	34	1.95
78451--78482	15	2.2	15	94	5	57	25	28	18	28	1.98
79864--80139	54	5.2	54	86	6	325	29	18	19	32	1.96
79864--80139	108	2.6	108	85	6	359	29	18	19	32	1.96
82018--82188	86	2.0	88	89	3	265	33	10	11	43	1.75
84418--84480	21	3.0	21	85	0	90	25	22	26	25	2.00
90172--90222	20	2.5	20	100	0	102	29	25	19	25	1.99
90777--90837	21	2.9	21	85	0	86	22	18	27	31	1.97
91718--91758	21	1.9	21	85	5	55	36	17	21	24	1.94
99011--99050	16	2.4	16	87	4	53	27	0	7	65	1.20
103362--103400	16	2.3	18	83	16	57	66	2	5	25	1.25
104440--104999	105	5.4	105	93	2	880	21	17	26	34	1.95
105174--105487	104	3.1	104	90	3	471	36	11	21	31	1.89
105394--105540	39	3.6	39	70	20	102	36	14	22	27	1.93
105396--105553	86	1.8	86	94	2	282	38	13	21	25	1.91
106729--107265	183	2.9	183	95	1	943	30	21	20	27	1.98
113803--114505	356	2.0	355	90	0	1120	35	17	19	27	1.94
117797--117845	3	16.7	3	87	4	73	63	0	4	32	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121725--121765	15	2.9	14	85	7	55	36	2	2	58	1.24
121839--121891	19	2.9	19	71	21	51	58	1	1	37	1.20
121867--121931	23	2.8	23	78	2	76	55	4	1	38	1.30
121994--122025	2	16.0	2	100	0	64	50	0	0	50	1.00
122125--122180	3	18.7	3	75	14	53	39	1	0	58	1.08
123411--123468	25	2.3	25	82	8	73	58	1	3	36	1.25
130988--131071	1	84.0	1	68	0	51	84	0	3	11	0.74
130966--131093	6	21.3	6	76	9	66	80	0	10	9	0.91
130996--131064	12	5.9	12	86	6	106	84	0	2	13	0.74
130984--131083	40	2.6	38	84	9	130	83	0	7	10	0.82
130988--131071	14	5.7	14	80	15	82	84	0	3	11	0.74
130966--131083	52	2.2	55	84	7	152	81	0	8	10	0.88
133866--133920	20	2.8	20	82	0	74	29	23	20	27	1.99
133760--134613	119	7.2	119	93	0	1422	36	14	17	30	1.90
133985--134039	20	2.8	20	88	0	83	32	20	20	27	1.97
133760--135079	238	5.7	237	89	5	1885	37	14	17	30	1.90
134223--134277	20	2.8	20	85	0	74	34	21	18	25	1.96
134342--134396	20	2.8	20	82	0	74	30	21	18	29	1.97
134461--134509	20	2.5	20	86	0	62	32	24	14	28	1.94
134362--135049	218	3.2	218	92	0	1178	37	14	17	30	1.90
134481--134930	99	4.3	99	78	11	488	38	14	17	29	1.90
134679--134728	20	2.5	20	86	0	64	36	24	14	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134580--134827	119	2.1	119	93	0	415	37	16	16	29	1.90
134897--134951	20	2.8	20	85	0	74	30	21	20	27	1.98
134798--135079	119	2.4	119	93	1	485	36	14	17	31	1.91
135015--135064	20	2.5	20	86	0	64	30	24	14	32	1.94
135216--135269	3	17.7	3	81	7	56	40	1	0	57	1.09
135214--135269	14	3.7	14	78	21	60	41	1	0	57	1.09
135207--135270	21	3.0	22	81	9	71	42	3	0	54	1.16
135207--135269	26	2.4	25	79	10	72	41	3	0	55	1.16
135222--135275	26	2.1	26	82	6	65	46	1	0	51	1.11
142165--142216	27	1.9	27	84	7	70	25	13	17	44	1.85
144018--144058	16	2.6	16	88	3	57	29	21	12	36	1.90
149947--150007	24	2.8	20	85	9	68	49	4	1	44	1.33
151311--151421	3	37.0	3	78	10	102	56	0	3	39	1.17
151590--151813	99	2.3	99	84	4	299	33	17	14	34	1.90
152440--152491	22	2.4	22	83	6	70	42	11	7	38	1.70
152581--152722	54	2.6	54	94	0	248	33	22	5	38	1.78
157864--157917	26	2.1	26	85	0	72	48	18	3	29	1.65
158442--158536	25	3.7	25	72	8	91	35	12	2	49	1.53
158439--158556	53	2.2	53	98	0	227	38	11	1	47	1.50
158464--158578	53	2.2	51	84	9	142	38	13	4	44	1.63
159366--159410	22	2.0	22	95	0	81	46	4	11	37	1.60
159374--159423	22	2.2	22	82	7	55	56	6	10	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160711--160762	14	3.6	14	79	7	59	38	7	17	36	1.78
160921--160995	22	3.1	25	70	16	68	46	0	0	53	1.00
160920--160995	25	3.3	23	82	12	93	46	0	0	53	1.00
160940--160985	12	3.8	12	77	5	56	43	0	0	56	0.99
160940--161035	25	3.7	25	75	21	81	45	0	2	52	1.12
160948--161034	31	3.1	27	78	15	72	44	0	2	52	1.13
161259--161315	28	2.0	28	100	0	114	10	22	17	49	1.77
161266--161326	28	2.2	28	84	0	77	16	18	18	47	1.83
167702--167794	31	3.0	31	76	7	89	34	12	10	41	1.78
167831--167951	56	2.1	57	82	10	142	32	18	7	42	1.78
169497--169542	18	2.3	20	82	17	53	54	19	6	19	1.66
171037--171069	2	16.5	2	100	0	66	48	0	0	51	1.00
174037--174079	23	1.9	22	95	4	77	25	25	23	25	2.00
174770--174801	15	2.1	16	88	11	50	25	21	15	37	1.93
174861--174894	13	2.6	13	90	0	50	35	8	14	41	1.77

Tables:   1

The End!