genome.fa.s2903.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002903.1 Hibiscus syriacus cultivar Beakdansim tig00005994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86523

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140--281	71	2.0	69	91	5	232	26	19	10	44	1.82
4593--4642	17	3.1	17	69	16	52	52	20	6	22	1.68
6076--6108	12	2.6	13	85	9	50	36	0	0	63	0.95
6591--6658	32	2.2	32	83	2	84	36	30	13	19	1.90
7173--7233	25	2.5	24	82	7	79	54	0	11	34	1.37
13538--13577	3	12.7	3	89	5	53	40	0	0	60	0.97
13536--13589	20	2.7	21	82	8	67	44	0	0	55	0.99
13541--13582	9	4.6	9	83	13	50	42	0	0	57	0.99
14797--14844	16	3.0	17	85	8	57	29	6	4	60	1.40
15051--15400	135	2.6	136	82	8	412	36	7	8	48	1.62
15255--15330	16	4.8	15	73	16	64	38	2	2	56	1.27
20814--20887	7	10.7	7	86	4	89	82	0	17	0	0.67
20805--20887	7	12.8	6	77	18	62	83	0	16	0	0.65
20804--20881	32	2.4	33	95	2	140	83	0	16	0	0.65
20804--20887	40	2.1	40	91	2	134	83	0	16	0	0.65
25295--25352	22	2.6	22	88	0	89	32	13	13	39	1.85
27901--27969	23	3.0	23	89	0	111	17	24	26	31	1.97
29317--29773	46	10.0	46	92	4	721	23	23	19	33	1.97
29317--29773	136	3.3	137	93	3	742	23	23	19	33	1.97
29724--29973	73	3.4	73	94	1	430	26	18	22	31	1.97
30107--30160	24	2.2	24	87	6	74	46	0	0	53	1.00
31420--31459	19	2.1	19	90	9	64	22	0	5	72	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31426--31501	11	6.5	11	76	18	66	27	2	2	67	1.18
31427--31486	19	2.9	19	79	18	59	26	1	3	68	1.15
31612--31964	135	2.6	136	84	8	456	37	7	8	46	1.63
31962--32009	21	2.3	20	80	16	53	50	4	0	45	1.21
37553--37657	53	2.0	53	86	0	147	40	22	11	25	1.88
41890--42569	338	2.0	339	97	0	1299	28	21	18	32	1.96
45658--45714	16	3.6	16	80	0	60	1	28	17	52	1.54
46071--46130	3	20.0	3	89	0	84	60	0	0	40	0.97
46062--46130	21	3.3	21	91	4	104	57	0	0	42	0.98
46062--46130	24	2.9	25	91	8	117	57	0	0	42	0.98
46450--46719	135	2.0	133	96	3	497	28	16	30	25	1.96
47113--47173	16	3.8	16	80	0	68	42	3	9	44	1.54
47111--47195	16	5.2	16	80	4	64	38	3	14	43	1.62
51762--51867	34	3.1	34	70	5	104	41	18	16	23	1.90
51796--51848	24	2.2	24	90	3	81	41	16	16	24	1.89
54013--54352	168	2.0	168	98	0	653	34	13	20	31	1.92
56808--56836	15	1.9	15	100	0	58	20	13	24	41	1.89
58129--58230	23	4.5	23	91	2	152	41	18	16	23	1.90
58135--58223	45	2.0	45	93	0	151	38	19	17	24	1.93
58224--58294	30	2.4	30	87	0	106	60	19	4	15	1.51
64138--64253	30	3.9	30	93	2	200	37	10	31	21	1.87
73404--73451	23	2.1	23	84	7	62	60	0	6	33	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73723--73937	41	5.2	42	78	8	226	32	20	17	30	1.95
73740--73942	82	2.4	83	88	2	291	32	19	17	30	1.95
73740--73970	82	2.8	81	78	11	227	32	19	17	30	1.95
73957--74035	42	1.9	41	82	10	99	39	17	13	29	1.89
75495--75564	34	2.1	34	83	0	86	18	11	10	60	1.58
80750--80820	21	3.4	21	65	20	58	32	11	12	43	1.78
80991--81059	23	3.3	23	61	23	60	31	14	14	39	1.86
81151--81219	23	3.3	23	62	29	62	31	13	14	40	1.84
80750--81306	40	13.9	40	93	1	911	30	16	11	41	1.83
81344--81429	28	3.0	28	91	1	136	30	10	15	44	1.80
81430--81605	36	4.8	37	68	8	110	27	21	14	36	1.92
81431--81677	73	3.4	73	87	3	311	27	20	13	38	1.91
81467--81604	37	3.8	35	69	6	96	28	19	13	37	1.90
82060--82339	105	2.6	105	86	5	357	41	16	18	23	1.90
82173--82587	117	3.6	118	83	6	468	40	14	20	24	1.90
82498--82673	91	1.9	91	89	2	273	42	14	18	25	1.88
86319--86392	36	2.1	36	92	7	125	43	5	5	45	1.49

Tables:   1

The End!