Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002904.1 Hibiscus syriacus cultivar Beakdansim tig00005995_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 150632
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
File 1 of 2
Found at i:4917 original size:2 final size:2
Alignment explanation
Indices: 4871--4902 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
4861 TCATCAACAA
4871 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4903 TATGAAATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5702 original size:3 final size:3
Alignment explanation
Indices: 5694--5757 Score: 119
Period size: 3 Copynumber: 21.3 Consensus size: 3
5684 TCTATTCCTT
*
5694 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
5742 TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
5758 GGTTTATATC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7117 original size:20 final size:20
Alignment explanation
Indices: 7092--7135 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
7082 TAGATTTGAT
7092 TAAAAA-ATAATTAATAAAAA
1 TAAAAATATAA-TAATAAAAA
*
7112 TAAAAATATAATAATAATAA
1 TAAAAATATAATAATAAAAA
7132 TAAA
1 TAAA
7136 TAGATGACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (20 bp):
TAAAAATATAATAATAAAAA
Found at i:9015 original size:17 final size:17
Alignment explanation
Indices: 8993--9038 Score: 67
Period size: 16 Copynumber: 2.8 Consensus size: 17
8983 GCGGGGTTAA
*
8993 TTTAAAAAAAAATATTT
1 TTTAAAATAAAATATTT
*
9010 TTT-AAATATAATATTT
1 TTTAAAATAAAATATTT
9026 TTTAAAATAAAAT
1 TTTAAAATAAAAT
9039 CTTTAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TTTAAAATAAAATATTT
Found at i:9024 original size:16 final size:16
Alignment explanation
Indices: 9003--9054 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
8993 TTTAAAAAAA
9003 AATATTTTTTAAATAT
1 AATATTTTTTAAATAT
9019 AATATTTTTTAAA-AT
1 AATATTTTTTAAATAT
* * *
9034 AAAATCTTTAAAATTAT
1 AATATTTTTTAAA-TAT
9051 AATA
1 AATA
9055 CAACACATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 12 0.40
16 13 0.43
17 5 0.17
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
AATATTTTTTAAATAT
Found at i:17434 original size:23 final size:24
Alignment explanation
Indices: 17399--17443 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
17389 AAAATAAGAA
*
17399 ATAAAAATCAAAATAATAAAAAGG
1 ATAAAAATCAAAATAAGAAAAAGG
17423 ATAAAAAT-AAAATAAGAAAAA
1 ATAAAAATCAAAATAAGAAAAA
17444 AGCAGAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.16
Consensus pattern (24 bp):
ATAAAAATCAAAATAAGAAAAAGG
Found at i:17444 original size:24 final size:24
Alignment explanation
Indices: 17399--17445 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
17389 AAAATAAGAA
*
17399 ATAAAAATCAAAATAATAAAAAGG
1 ATAAAAATCAAAATAAAAAAAAGG
17423 ATAAAAAT-AAAATAAGAAAAAAG
1 ATAAAAATCAAAATAA-AAAAAAG
17446 CAGAATAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.74, C:0.02, G:0.09, T:0.15
Consensus pattern (24 bp):
ATAAAAATCAAAATAAAAAAAAGG
Found at i:17647 original size:26 final size:25
Alignment explanation
Indices: 17600--17660 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
17590 TAAAAATAAT
17600 AATAAGTAATAAAACAAAATAAGAAA
1 AATAAGTAATAAAACAAAATAA-AAA
* *
17626 AATAAGTAGATAAAAC-AGATAAATA
1 AATAAGTA-ATAAAACAAAATAAAAA
17651 AATAA-TAATA
1 AATAAGTAATA
17661 TATATAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 3 0.09
24 2 0.06
25 7 0.22
26 13 0.41
27 7 0.22
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.20
Consensus pattern (25 bp):
AATAAGTAATAAAACAAAATAAAAA
Found at i:23846 original size:19 final size:17
Alignment explanation
Indices: 23814--23849 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
23804 ATAATTATTA
23814 AATTAAAATTTTAATTT
1 AATTAAAATTTTAATTT
23831 AATTAATAATTTTTAATTT
1 AATTAA-AA-TTTTAATTT
23850 TCTAATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 2 0.12
19 9 0.53
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTAAAATTTTAATTT
Found at i:24827 original size:20 final size:21
Alignment explanation
Indices: 24777--24832 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 21
24767 GGTACCACAT
*
24777 GAACAATATCGATACTGTTCA
1 GAACAATATCGATACTGTTAA
* * *
24798 -TATAACATCGATACTG-TAA
1 GAACAATATCGATACTGTTAA
*
24817 GAACAATATCGGTACT
1 GAACAATATCGATACT
24833 ACGTTCGTGA
Statistics
Matches: 26, Mismatches: 8, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (21 bp):
GAACAATATCGATACTGTTAA
Found at i:26072 original size:5 final size:5
Alignment explanation
Indices: 26062--26087 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26052 CAATTTTATC
26062 TTTAA TTTAA TTTAA TTTAA TTTAA T
1 TTTAA TTTAA TTTAA TTTAA TTTAA T
26088 AAATTAACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTTAA
Found at i:28140 original size:49 final size:50
Alignment explanation
Indices: 28060--28155 Score: 158
Period size: 49 Copynumber: 1.9 Consensus size: 50
28050 GCAAAACTCC
* *
28060 CCTTAATAAAATGTTTAATGAAAAAGATATCAATTGTTGAAAAATATCCA
1 CCTTAATAAAATGATTAATGAAAAAAATATCAATTGTTGAAAAATATCCA
*
28110 CCTTAATAAAAT-ATTAATGAAAAAAATATCAATTGTTGGAAAATAT
1 CCTTAATAAAATGATTAATGAAAAAAATATCAATTGTTGAAAAATAT
28156 TTGAAAATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
49 31 0.72
50 12 0.28
ACGTcount: A:0.50, C:0.08, G:0.09, T:0.32
Consensus pattern (50 bp):
CCTTAATAAAATGATTAATGAAAAAAATATCAATTGTTGAAAAATATCCA
Found at i:33259 original size:3 final size:3
Alignment explanation
Indices: 33239--33289 Score: 66
Period size: 3 Copynumber: 16.7 Consensus size: 3
33229 TGGTATTTGA
* * *
33239 AAT AATT AAT ACT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AAG
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
33285 AAT AA
1 AAT AA
33290 GCCATCGTCC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:33570 original size:2 final size:2
Alignment explanation
Indices: 33563--33600 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
33553 CTAGTTTTGA
33563 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33601 TGTTAATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:35873 original size:2 final size:2
Alignment explanation
Indices: 35866--35895 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
35856 AAAAACAACC
35866 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
35896 AGTGTATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36868 original size:60 final size:60
Alignment explanation
Indices: 36775--36898 Score: 151
Period size: 60 Copynumber: 2.1 Consensus size: 60
36765 ATGTCAAGGT
* * * * * *
36775 TATTTAATGATAGAGAATGTGAAATATAAATGGCCCTT-ATGTTTGGGTTGCTATGCTCCA
1 TATTTAATCAAAGAGAATATGAAAGATAAATGGCCCTTCA-GTTTAGGTTGCTAGGCTCCA
* * *
36835 TATTTAATCAAAGAGAATATGGAAGATATATGGCCCTTCAGTTTAGGTTGCTAGGCTCTA
1 TATTTAATCAAAGAGAATATGAAAGATAAATGGCCCTTCAGTTTAGGTTGCTAGGCTCCA
36895 TATT
1 TATT
36899 AGTTTTGGTG
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 53 0.98
61 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (60 bp):
TATTTAATCAAAGAGAATATGAAAGATAAATGGCCCTTCAGTTTAGGTTGCTAGGCTCCA
Found at i:38496 original size:30 final size:31
Alignment explanation
Indices: 38460--38540 Score: 83
Period size: 36 Copynumber: 2.5 Consensus size: 31
38450 GAAAATCGAA
38460 TTAAACGGGGACGGGA-AAAAATCGTTTATG
1 TTAAACGGGGACGGGAGAAAAATCGTTTATG
** *
38490 TTAAACGAAGACGGGGGATGGGGAAAATCGTTTATG
1 TTAAACGGGGAC--GGGA---GAAAAATCGTTTATG
38526 TTAAACGGGGACGGG
1 TTAAACGGGGACGGG
38541 GATGAGTTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
30 10 0.25
32 4 0.10
34 3 0.08
36 23 0.57
ACGTcount: A:0.33, C:0.10, G:0.36, T:0.21
Consensus pattern (31 bp):
TTAAACGGGGACGGGAGAAAAATCGTTTATG
Found at i:46885 original size:43 final size:42
Alignment explanation
Indices: 46825--47054 Score: 195
Period size: 43 Copynumber: 5.4 Consensus size: 42
46815 AAATTTTTAT
* * *
46825 TTTTTATATTTATAATTGAGGCCTCTAATTTTTGTAATCCCAC
1 TTTTTATCTTTATAATTGAGGCC-CTAATTTTTTTAATCTCAC
* * *
46868 CTTTTATCTTTATAATTG-GGCCCTTATTTTTTTTAATCAT-ATT
1 TTTTTATCTTTATAATTGAGGCCC-TAATTTTTTTAATC-TCA-C
* * * *
46911 TTTTTATATTTATAATTGATGACTCTAATTTTTTTCAATCTCAT
1 TTTTTATCTTTATAATTGA-GGCCCTAATTTTTTT-AATCTCAC
* *
46955 TTTTTACCTTTATAATTGAGGCCACTAA-GTTTTTAAT-TCAC
1 TTTTTATCTTTATAATTGAGGCC-CTAATTTTTTTAATCTCAC
*
46996 TTTTTA-CTTTTATAATTGAGGTCCCTAATTTTTTCAATCAT-AC
1 TTTTTATC-TTTATAATTGAGG-CCCTAATTTTTTTAATC-TCAC
47039 TTTTTA-CTTTTATAAT
1 TTTTTATC-TTTATAAT
47055 CTAATCCCCT
Statistics
Matches: 155, Mismatches: 19, Indels: 26
0.77 0.09 0.13
Matches are distributed among these distances:
40 1 0.01
41 27 0.17
42 29 0.19
43 57 0.37
44 33 0.21
45 8 0.05
ACGTcount: A:0.25, C:0.14, G:0.07, T:0.53
Consensus pattern (42 bp):
TTTTTATCTTTATAATTGAGGCCCTAATTTTTTTAATCTCAC
Found at i:47012 original size:41 final size:42
Alignment explanation
Indices: 46941--47054 Score: 144
Period size: 41 Copynumber: 2.7 Consensus size: 42
46931 GACTCTAATT
* *
46941 TTTTTCAATCTCATTTTTTACCTTTATAATTGAGG-CCACTAAG
1 TTTTTCAAT-TCACTTTTTACTTTTATAATTGAGGTCC-CTAAG
*
46984 TTTTT-AATTCACTTTTTACTTTTATAATTGAGGTCCCTAAT
1 TTTTTCAATTCACTTTTTACTTTTATAATTGAGGTCCCTAAG
47025 TTTTTCAA-TCATACTTTTTACTTTTATAAT
1 TTTTTCAATTC--ACTTTTTACTTTTATAAT
47055 CTAATCCCCT
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
41 34 0.53
42 7 0.11
43 23 0.36
ACGTcount: A:0.25, C:0.16, G:0.06, T:0.53
Consensus pattern (42 bp):
TTTTTCAATTCACTTTTTACTTTTATAATTGAGGTCCCTAAG
Found at i:48415 original size:31 final size:30
Alignment explanation
Indices: 48380--48461 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
48370 GTCCAATTGT
* *
48380 TATTTTATCTAAACTTTAGGAGTTAAAATGA
1 TATTTTATCTAAAATTTAGG-GTTAAAATAA
* ** * *
48411 TATTTCATCTAAAATCCAAGGTTAAATTAA
1 TATTTTATCTAAAATTTAGGGTTAAAATAA
*
48441 TATTTTATCTAAATTTTAGGG
1 TATTTTATCTAAAATTTAGGG
48462 ATGAAATTAA
Statistics
Matches: 39, Mismatches: 12, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
30 24 0.62
31 15 0.38
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.43
Consensus pattern (30 bp):
TATTTTATCTAAAATTTAGGGTTAAAATAA
Found at i:48954 original size:60 final size:60
Alignment explanation
Indices: 48883--49013 Score: 149
Period size: 60 Copynumber: 2.2 Consensus size: 60
48873 TAGAATGAAG
* * ** * *
48883 GTCATAGTTTAGGGATTA-AATTGAAATATTCAAATGTTTAAGGACTAACTTAGAAA-GATA
1 GTCATAATTTAGGGA-TACAATTAAAATATTCAAAAATTTAAGAACTAACTTA-AAATGAGA
* * *
48943 TTCATAATTTAGGGATACAATTAAAATATTTAAAAATTTAAGAACTAATTTAAAATGAGA
1 GTCATAATTTAGGGATACAATTAAAATATTCAAAAATTTAAGAACTAACTTAAAATGAGA
49003 GTCATAATTTA
1 GTCATAATTTA
49014 AGGTGCAAGT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
59 5 0.08
60 54 0.92
ACGTcount: A:0.45, C:0.06, G:0.14, T:0.35
Consensus pattern (60 bp):
GTCATAATTTAGGGATACAATTAAAATATTCAAAAATTTAAGAACTAACTTAAAATGAGA
Found at i:51906 original size:25 final size:25
Alignment explanation
Indices: 51878--51946 Score: 138
Period size: 25 Copynumber: 2.8 Consensus size: 25
51868 TATATATATA
51878 TCCCGAAGGACCGCGTAGAATATTG
1 TCCCGAAGGACCGCGTAGAATATTG
51903 TCCCGAAGGACCGCGTAGAATATTG
1 TCCCGAAGGACCGCGTAGAATATTG
51928 TCCCGAAGGACCGCGTAGA
1 TCCCGAAGGACCGCGTAGA
51947 CCCTCTACTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.28, C:0.26, G:0.29, T:0.17
Consensus pattern (25 bp):
TCCCGAAGGACCGCGTAGAATATTG
Found at i:53641 original size:21 final size:21
Alignment explanation
Indices: 53617--53661 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
53607 TGTTGTTCGT
* *
53617 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
53638 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
53659 TTG
1 TTG
53662 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:56802 original size:23 final size:23
Alignment explanation
Indices: 56776--56820 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
56766 CACCACAGCT
*
56776 CGTATAAATGCACCGAAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCG
* *
56799 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
56821 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCG
Found at i:58631 original size:21 final size:20
Alignment explanation
Indices: 58601--58644 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
58591 TGTTGTTCGT
* *
58601 TTGAAGGGTATCGGTTCCCC
1 TTGAAGGGTACCGATTCCCC
58621 TTGAATGGGTACCGATTCCCC
1 TTGAA-GGGTACCGATTCCCC
58642 TTG
1 TTG
58645 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.32
Consensus pattern (20 bp):
TTGAAGGGTACCGATTCCCC
Found at i:61458 original size:31 final size:31
Alignment explanation
Indices: 61420--61548 Score: 107
Period size: 31 Copynumber: 4.1 Consensus size: 31
61410 AGAACCTCAA
* *
61420 AAACTGTCCATAGGTCCCAAAAAACCTAGGT
1 AAACTGTCCATATGTCCCAAAAAACATAGGT
* ** *
61451 AAACTGTCCATATGTTCCTTAGAACATAGGT
1 AAACTGTCCATATGTCCCAAAAAACATAGGT
* * * *
61482 ATACTGTCCATATGTCCCGAAAGATATAGGT
1 AAACTGTCCATATGTCCCAAAAAACATAGGT
* ** *
61513 AATTA-TGTCCATATGTTCCGTAGAACATAGGT
1 AA--ACTGTCCATATGTCCCAAAAAACATAGGT
61545 AAAC
1 AAAC
61549 CCTCGACTCT
Statistics
Matches: 76, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
30 1 0.01
31 50 0.66
32 24 0.32
33 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (31 bp):
AAACTGTCCATATGTCCCAAAAAACATAGGT
Found at i:61543 original size:32 final size:32
Alignment explanation
Indices: 61446--61546 Score: 120
Period size: 31 Copynumber: 3.2 Consensus size: 32
61436 CCAAAAAACC
*
61446 TAGGTAA-ACTGTCCATATGTTCCTTAGAACA
1 TAGGTAATACTGTCCATATGTTCCGTAGAACA
* * *
61477 TAGGT-ATACTGTCCATATGTCCCG-AAAGATA
1 TAGGTAATACTGTCCATATGTTCCGTAGA-ACA
61508 TAGGTAATTA-TGTCCATATGTTCCGTAGAACA
1 TAGGTAA-TACTGTCCATATGTTCCGTAGAACA
61540 TAGGTAA
1 TAGGTAA
61547 ACCCTCGACT
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
30 3 0.05
31 27 0.47
32 24 0.41
33 4 0.07
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.32
Consensus pattern (32 bp):
TAGGTAATACTGTCCATATGTTCCGTAGAACA
Found at i:66172 original size:31 final size:31
Alignment explanation
Indices: 66134--66207 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
66124 AGAACCTCAG
66134 AAACTGTCCATAGGTCCCAAAGAACATAGGT
1 AAACTGTCCATAGGTCCCAAAGAACATAGGT
* * * **
66165 AAACTGTCTATATGTTCCTTAGAACATAGGT
1 AAACTGTCCATAGGTCCCAAAGAACATAGGT
* *
66196 ATACTGTTCATA
1 AAACTGTCCATA
66208 TATTCCGAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (31 bp):
AAACTGTCCATAGGTCCCAAAGAACATAGGT
Found at i:66255 original size:32 final size:31
Alignment explanation
Indices: 66154--66259 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
66144 TAGGTCCCAA
* ** *
66154 AGAACATAGGTAAACTGTCTATATGTTCCTT
1 AGAACATAGGTATACTGTAAATATGTTCCGT
** *
66185 AGAACATAGGTATACTGTTCATATATTCCG-
1 AGAACATAGGTATACTGTAAATATGTTCCGT
* **
66215 AAAGACATAGGTGATTTTGTAAATATGTTCCGT
1 AGA-ACATAGGT-ATACTGTAAATATGTTCCGT
66248 AGAACATAGGTA
1 AGAACATAGGTA
66260 AACCCTTGAC
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
30 2 0.03
31 34 0.57
32 22 0.37
33 2 0.03
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (31 bp):
AGAACATAGGTATACTGTAAATATGTTCCGT
Found at i:69270 original size:21 final size:21
Alignment explanation
Indices: 69244--69288 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
69234 GAGTTCTGGG
* *
69244 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
69265 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
69286 CAA
1 CAA
69289 ACGACAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:70208 original size:31 final size:31
Alignment explanation
Indices: 70144--70267 Score: 180
Period size: 31 Copynumber: 4.0 Consensus size: 31
70134 AGGGTCGAGG
*
70144 GTTTACCTATGTTCTTCGGGACATAT-GACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
70174 GTTTACCTATGTTCTTCGGAACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
* *
70205 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
* *
70236 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGAA-CATATGGACT
70267 G
1 G
70268 GTCCTTCGGG
Statistics
Matches: 85, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
30 25 0.29
31 59 0.69
32 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGAACATATGGACT
Found at i:72673 original size:21 final size:20
Alignment explanation
Indices: 72646--72744 Score: 81
Period size: 21 Copynumber: 4.8 Consensus size: 20
72636 AATCAGTTTC
72646 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
72667 TAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
72688 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
72708 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
72729 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
72745 ACACATAAAT
Statistics
Matches: 61, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
20 16 0.26
21 45 0.74
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.22
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:72773 original size:20 final size:20
Alignment explanation
Indices: 72711--72904 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
72701 CGATTTTCCA
* ** *
72711 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
72731 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
72751 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
72771 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
72791 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
72811 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
72831 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
72851 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
72871 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
72892 AAATCGCAACGCG
1 AAATCGCAACGCG
72905 ATATTTAAAG
Statistics
Matches: 146, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 126 0.86
21 17 0.12
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:72795 original size:60 final size:60
Alignment explanation
Indices: 72711--72904 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
72701 CGATTTTCCA
* ** * *
72711 AAATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* * *** *
72771 AAATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* **
72831 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGT
72892 AAATCGCAACGCG
1 AAATCGCAACGCG
72905 ATATTTAAAG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 81 0.72
61 31 0.28
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
Found at i:73326 original size:33 final size:33
Alignment explanation
Indices: 73287--73357 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
73277 TTCACTTAGA
* *
73287 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTACGAT
* *
73320 TTTCATTTCGCGTTGCTATTCTCTCGTTACGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTACGAT
73353 TTTCA
1 TTTCA
73358 AGTTAGTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.13, C:0.23, G:0.17, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTACGAT
Found at i:73481 original size:20 final size:20
Alignment explanation
Indices: 73437--73532 Score: 122
Period size: 21 Copynumber: 4.8 Consensus size: 20
73427 TGCAGAAGAG
*
73437 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGA-GAATGAAAA
***
73458 TCGCAACGAGAGAATGACTG
1 TCGCAACGAGAGAATGAAAA
73478 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAG-AATGAAAA
*
73499 TCGCAACGCGA-AATGAAAA
1 TCGCAACGAGAGAATGAAAA
73518 TCGCAACGAGAGAAT
1 TCGCAACGAGAGAAT
73533 CGCAACGCGA
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
19 18 0.28
20 20 0.31
21 26 0.41
ACGTcount: A:0.46, C:0.18, G:0.24, T:0.12
Consensus pattern (20 bp):
TCGCAACGAGAGAATGAAAA
Found at i:73494 original size:41 final size:40
Alignment explanation
Indices: 73435--73531 Score: 140
Period size: 41 Copynumber: 2.4 Consensus size: 40
73425 TTTGCAGAAG
* *
73435 AGTCGCAACGAGATAAATGAAAATCGCAACGAGAGAATGAC
1 AGTCGCAACGAGAGAAATGAAAATCGCAACGAGA-AATGAA
* *
73476 TGTCGCAACGAGAGAAATGAAAATCGCAACGCGAAATGAA
1 AGTCGCAACGAGAGAAATGAAAATCGCAACGAGAAATGAA
*
73516 AATCGCAACGAGAGAA
1 AGTCGCAACGAGAGAA
73532 TCGCAACGCG
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
40 19 0.38
41 31 0.62
ACGTcount: A:0.46, C:0.18, G:0.25, T:0.11
Consensus pattern (40 bp):
AGTCGCAACGAGAGAAATGAAAATCGCAACGAGAAATGAA
Found at i:73577 original size:19 final size:19
Alignment explanation
Indices: 73550--73647 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
73540 CGAAACCAAA
*
73550 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
73569 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
73583 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
73602 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
73616 TCTCGTTGCGATTGTCATT
1 TCGCGTTGCGATTTTCATT
73635 TCGCGTTGCGATT
1 TCGCGTTGCGATT
73648 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.23, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:73591 original size:14 final size:14
Alignment explanation
Indices: 73572--73661 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
73562 TTTCATTTCG
73572 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
73586 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
73605 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
73619 CGTTGCGATTGTCATTTCG
1 CGTTGCGA-T-TC---TCT
73638 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
73652 CGTTGCGATT
1 CGTTGCGATT
73662 TTCATTTCAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 1 0.02
16 5 0.08
17 5 0.08
18 1 0.02
19 20 0.32
ACGTcount: A:0.09, C:0.24, G:0.23, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:73597 original size:33 final size:33
Alignment explanation
Indices: 73555--73669 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
73545 CCAAATCGCA
73555 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
73588 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
73621 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
73654 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
73670 AACCAAAAGA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.10, C:0.23, G:0.21, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:75594 original size:185 final size:186
Alignment explanation
Indices: 75365--75832 Score: 913
Period size: 185 Copynumber: 2.5 Consensus size: 186
75355 TAGATTGCTT
75365 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
*
75430 TTTGTTTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
75495 GTGTATTCTTTAACACTGTG-AATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
75550 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
75615 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
75680 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
75736 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
75801 TTTGTCTTTGTTTTGTCTTTTGGTTG-AAGTAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
75833 TGCAATCCAT
Statistics
Matches: 281, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
185 155 0.55
186 126 0.45
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (186 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:75674 original size:93 final size:93
Alignment explanation
Indices: 75365--75832 Score: 913
Period size: 93 Copynumber: 5.1 Consensus size: 93
75355 TAGATTGCTT
75365 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
*
75430 TTTGTTTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
75458 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTG-AATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
75522 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
75550 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
75615 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
75643 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
75708 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
75736 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
75801 TTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
75828 AGTAA
1 AGTAA
75833 TGCAATCCAT
Statistics
Matches: 373, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
92 97 0.26
93 276 0.74
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:75920 original size:19 final size:19
Alignment explanation
Indices: 75880--76008 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
75870 TAGTTTACTT
* *
75880 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
75900 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
75919 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
75938 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
75952 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
75971 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
75985 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
76004 TCGCA
1 TCGCA
76009 TTGCGATTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 46 0.51
20 13 0.14
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:75959 original size:33 final size:32
Alignment explanation
Indices: 75916--76008 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
75906 CGCGAAACCA
**
75916 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
75948 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
75981 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
76009 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:76006 original size:52 final size:52
Alignment explanation
Indices: 75880--76008 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 52
75870 TAGTTTACTT
**
75880 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
75932 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
75985 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACACAAAATCGCA
76009 TTGCGATTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 42 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:76045 original size:14 final size:14
Alignment explanation
Indices: 76026--76082 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
76016 TTTCATTTCG
76026 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
76040 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
76057 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
76073 CGTTGCGATT
1 CGTTGCGATT
76083 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:76051 original size:33 final size:33
Alignment explanation
Indices: 76009--76101 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
75999 CAAAATCGCA
*
76009 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
76042 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
76075 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
76102 TTGGTTTCGT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:76109 original size:19 final size:19
Alignment explanation
Indices: 76004--76118 Score: 106
Period size: 19 Copynumber: 6.6 Consensus size: 19
75994 GAAACCAAAA
*
76004 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
76023 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
76039 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
76056 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
76072 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
76089 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
76108 TCGTGTTGCGA
1 TCGCGTTGCGA
76119 AAGTAAACTA
Statistics
Matches: 78, Mismatches: 8, Indels: 20
0.74 0.08 0.19
Matches are distributed among these distances:
14 15 0.19
16 11 0.14
17 11 0.14
19 41 0.53
ACGTcount: A:0.10, C:0.20, G:0.23, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:78062 original size:14 final size:14
Alignment explanation
Indices: 78043--78078 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
78033 ATTGTTTAAT
78043 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
78057 TGATTTGTATAAGT
1 TGATTTGTAAAAGA
78071 TGATTTGT
1 TGATTTGT
78079 GTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:78201 original size:19 final size:19
Alignment explanation
Indices: 78185--78282 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
78175 AAAAATGACT
78185 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
78204 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
78223 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
78237 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
78256 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
78276 ATCGCAA
1 ATCGCAA
78283 CGAGAGAATC
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 39 0.55
20 16 0.23
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:78314 original size:53 final size:53
Alignment explanation
Indices: 78185--78300 Score: 225
Period size: 53 Copynumber: 2.2 Consensus size: 53
78175 AAAAATGACT
78185 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
78237 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
78290 ATCGCAATGCG
1 ATCGCAATGCG
78301 TTTATAATTT
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 29 0.46
53 34 0.54
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:78353 original size:19 final size:19
Alignment explanation
Indices: 78329--78493 Score: 189
Period size: 19 Copynumber: 9.4 Consensus size: 19
78319 GATTCTCTCG
78329 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
78348 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
78367 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
78381 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
78400 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
78419 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
78433 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
78453 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
*
78467 TTGGGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
78486 TTGCGATT
1 TTGCGATT
78494 CTCTCGTTGC
Statistics
Matches: 124, Mismatches: 6, Indels: 32
0.77 0.04 0.20
Matches are distributed among these distances:
14 23 0.19
16 16 0.13
17 13 0.10
18 3 0.02
19 57 0.46
20 12 0.10
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:78364 original size:52 final size:52
Alignment explanation
Indices: 78307--78465 Score: 309
Period size: 52 Copynumber: 3.0 Consensus size: 52
78297 TGCGTTTATA
78307 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
78359 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
78411 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTC
78464 AT
1 AT
78466 GTTGGGATTT
Statistics
Matches: 106, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
52 89 0.84
53 17 0.16
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.46
Consensus pattern (52 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
Found at i:78515 original size:33 final size:33
Alignment explanation
Indices: 78307--78507 Score: 212
Period size: 33 Copynumber: 5.9 Consensus size: 33
78297 TGCGTTTATA
78307 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
*
78340 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 ATTTCGCATTGCGA--TTC-TCTCG--TTGCGATT-T-TC
* * * * *
78380 GTTGCG-ATTTTC-ATT-TCGCATTGCGATTTTC
1 ATTTCGCA-TTGCGATTCTCTCGTTGCGATTTTC
78411 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
* *
78444 ATTTCCGCATTGCGATTTTCAT-GTTGGGATTTTC
1 ATTT-CGCATTGCGATTCTC-TCGTTGCGATTTTC
78478 ATTTCGCATTGCGATTCTCTCGTTGCGATT
1 ATTTCGCATTGCGATTCTCTCGTTGCGATT
78508 GTAATTTCCG
Statistics
Matches: 138, Mismatches: 16, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
31 9 0.07
32 6 0.04
33 62 0.45
34 29 0.21
35 6 0.04
36 4 0.03
37 2 0.01
38 8 0.06
39 3 0.02
40 9 0.07
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.46
Consensus pattern (33 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
Found at i:80806 original size:12 final size:12
Alignment explanation
Indices: 80789--80813 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80779 TCTTCGGGGA
80789 CTTTTTCTTCTT
1 CTTTTTCTTCTT
80801 CTTTTTCTTCTT
1 CTTTTTCTTCTT
80813 C
1 C
80814 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:81022 original size:24 final size:24
Alignment explanation
Indices: 80988--81034 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
80978 CTGAAACATC
80988 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
81012 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
81035 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:81745 original size:20 final size:20
Alignment explanation
Indices: 81717--81946 Score: 228
Period size: 20 Copynumber: 11.5 Consensus size: 20
81707 AAATTTCAGT
* * *
81717 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
81737 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
81757 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
81777 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
*
81797 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* * *
81817 GTTGCGATATATGGATACGC
1 GTTGCGATTTACGGATTCGC
* ** *
81837 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATTCGC
* *
81857 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATTCGC
*
81877 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
81897 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
81917 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
81937 GTTGCGATTT
1 GTTGCGATTT
81947 TGGAAAATCG
Statistics
Matches: 180, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
20 179 0.99
21 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:81963 original size:21 final size:21
Alignment explanation
Indices: 81933--82015 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
81923 ATTTTCATAT
*
81933 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
81954 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
81975 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
81996 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
82016 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:82006 original size:42 final size:43
Alignment explanation
Indices: 81913--82011 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
81903 ATTTATGTGT
* *
81913 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
81954 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
81996 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
82012 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:90418 original size:21 final size:21
Alignment explanation
Indices: 90389--90441 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
90379 ATTCTGACTA
90389 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
90410 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
90431 TCGCAATGCGA
1 TCGCATTGCGA
90442 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:90456 original size:20 final size:20
Alignment explanation
Indices: 90431--90565 Score: 144
Period size: 20 Copynumber: 6.7 Consensus size: 20
90421 TTTTCCTAAT
90431 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* * ** *
90451 TCGCAACGTGAATTTGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
90472 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
*
90492 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
* * *
90512 TCGTAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
* *
90533 TCGCAATGCAAATACCTAAA
1 TCGCAATGCGAATACGTAAA
90553 TCGCAATGCGAAT
1 TCGCAATGCGAAT
90566 CTGACTATCG
Statistics
Matches: 92, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
20 62 0.67
21 30 0.33
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.23
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:90508 original size:61 final size:61
Alignment explanation
Indices: 90425--90565 Score: 201
Period size: 61 Copynumber: 2.3 Consensus size: 61
90415 TTGCGATTTT
* * * * *
90425 CCTAATTCGCAATGCGAATACGTAAATCGCAACGTGAATTTGGAAAATCGCAATGCGATTA
1 CCTAAATCGCAATGCGAATACGTAAATCGCAACGCGAATTAGGAAAATCGCAATGCAAATA
* * * *
90486 CGTAAATCGCAATGCGATTACGTAAATCGTAATGCGAATTAGGAAAATCGCAATGCAAATA
1 CCTAAATCGCAATGCGAATACGTAAATCGCAACGCGAATTAGGAAAATCGCAATGCAAATA
90547 CCTAAATCGCAATGCGAAT
1 CCTAAATCGCAATGCGAAT
90566 CTGACTATCG
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 69 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (61 bp):
CCTAAATCGCAATGCGAATACGTAAATCGCAACGCGAATTAGGAAAATCGCAATGCAAATA
Found at i:90534 original size:41 final size:41
Alignment explanation
Indices: 90469--90565 Score: 133
Period size: 41 Copynumber: 2.4 Consensus size: 41
90459 TGAATTTGGA
* * * *
90469 AAATCGCAATGCG-ATTACGTAAATCGCAATGCGATTACGT
1 AAATCGCAATGCGAATTACGAAAATCGCAATGCAAATACCT
* *
90509 AAATCGTAATGCGAATTAGGAAAATCGCAATGCAAATACCT
1 AAATCGCAATGCGAATTACGAAAATCGCAATGCAAATACCT
90550 AAATCGCAATGCGAAT
1 AAATCGCAATGCGAAT
90566 CTGACTATCG
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 12 0.24
41 37 0.76
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.23
Consensus pattern (41 bp):
AAATCGCAATGCGAATTACGAAAATCGCAATGCAAATACCT
Found at i:90581 original size:61 final size:61
Alignment explanation
Indices: 90425--90583 Score: 157
Period size: 61 Copynumber: 2.6 Consensus size: 61
90415 TTGCGATTTT
* * * * * * *
90425 CCTAATTCGCAATGCGAATAC-GTA-AATCGCAACGTGAATTTGGAAAATCGCAATGCGATTA
1 CCTAAATCGCAATGCGAAT-CTG-ACTATCGCAATGCGAATTAGGAAAATCGCAATGCAAATA
* *
90486 CGTAAATCGCAATGCG-AT-T-ACGTAAATCGTAATGCGAATTAGGAAAATCGCAATGCAAATA
1 CCTAAATCGCAATGCGAATCTGAC-T--ATCGCAATGCGAATTAGGAAAATCGCAATGCAAATA
90547 CCTAAATCGCAATGCGAATCTGACTATCGCAATGCGA
1 CCTAAATCGCAATGCGAATCTGACTATCGCAATGCGA
90584 TTTACATAGC
Statistics
Matches: 79, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
57 1 0.01
60 2 0.03
61 70 0.89
62 2 0.03
63 2 0.03
64 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.23
Consensus pattern (61 bp):
CCTAAATCGCAATGCGAATCTGACTATCGCAATGCGAATTAGGAAAATCGCAATGCAAATA
Found at i:91158 original size:21 final size:21
Alignment explanation
Indices: 91117--91175 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
91107 TTCTAAACTT
91117 AAAATCGCAAT-ACGA-AAATG
1 AAAATCGCAATGA-GAGAAATG
**
91137 ACTATCGCAATGAGAGAAATG
1 AAAATCGCAATGAGAGAAATG
*
91158 AAAATCGCAACGAGAGAA
1 AAAATCGCAATGAGAGAA
91176 TCGCAACGCG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 11 0.34
21 21 0.66
ACGTcount: A:0.51, C:0.15, G:0.20, T:0.14
Consensus pattern (21 bp):
AAAATCGCAATGAGAGAAATG
Found at i:91179 original size:14 final size:14
Alignment explanation
Indices: 91157--91215 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
91147 TGAGAGAAAT
91157 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
91171 GAGAATCGCAACGCGAAA
1 GAAAATCGCAA--CG--A
91189 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
*
91204 GATAATCGCAAC
1 GAAAATCGCAAC
91216 AAAGACAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
14 21 0.57
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.27
ACGTcount: A:0.46, C:0.22, G:0.22, T:0.10
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:91191 original size:33 final size:33
Alignment explanation
Indices: 91152--91215 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
91142 CGCAATGAGA
91152 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
91185 GAAATGAAAATCGCAACGAGATAATCGCAAC
1 GAAATGAAAATCGCAACGAGAGAATCGCAAC
91216 AAAGACAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.47, C:0.20, G:0.22, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:91253 original size:14 final size:14
Alignment explanation
Indices: 91230--91280 Score: 93
Period size: 14 Copynumber: 3.6 Consensus size: 14
91220 ACAAAACAGT
91230 GTTGCGATTCTCTC
1 GTTGCGATTCTCTC
*
91244 GTTACGATTCTCTC
1 GTTGCGATTCTCTC
91258 GTTGCGATTCTCTC
1 GTTGCGATTCTCTC
91272 GTTGCGATT
1 GTTGCGATT
91281 TTCATTTCGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.10, C:0.25, G:0.22, T:0.43
Consensus pattern (14 bp):
GTTGCGATTCTCTC
Found at i:91339 original size:20 final size:19
Alignment explanation
Indices: 91271--91347 Score: 109
Period size: 20 Copynumber: 3.9 Consensus size: 19
91261 GCGATTCTCT
91271 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
**
91290 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTTTCATTT-CG
*
91310 CGTTGCGATTTTCATTATCT
1 CGTTGCGATTTTCATT-TCG
91330 CGTTGCGATTTTCATTTC
1 CGTTGCGATTTTCATTTC
91348 AACCAAAAGA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
19 17 0.33
20 33 0.65
21 1 0.02
ACGTcount: A:0.13, C:0.22, G:0.19, T:0.45
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:93203 original size:94 final size:94
Alignment explanation
Indices: 93031--93312 Score: 475
Period size: 94 Copynumber: 3.1 Consensus size: 94
93021 TAGATTGCTT
* * *
93031 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAAC--TGT-TT-ATTAACACTGTGAAGTTAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
93092 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
93121 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
93186 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* * *
93215 AGTAAATTTGTTCGTTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
93280 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
93308 AGTAA
1 AGTAA
93313 TGCAATCCAT
Statistics
Matches: 182, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
90 34 0.19
92 3 0.02
93 8 0.04
94 137 0.75
ACGTcount: A:0.22, C:0.12, G:0.19, T:0.47
Consensus pattern (94 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:93452 original size:20 final size:20
Alignment explanation
Indices: 93429--93466 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
93419 CGAGAGAATG
93429 AAAATCGCAACGCGAAACCA
1 AAAATCGCAACGCGAAACCA
93449 AAAATCGCAACGCGAAAC
1 AAAATCGCAACGCGAAAC
93467 TATAATCGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.29, G:0.16, T:0.05
Consensus pattern (20 bp):
AAAATCGCAACGCGAAACCA
Found at i:93494 original size:19 final size:20
Alignment explanation
Indices: 93472--93526 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
93462 GAAACTATAA
93472 TCGCGTTGCGATTTTCA-TT
1 TCGCGTTGCGATTTTCATTT
**
93491 TCGCGTTGCGATAGTCATTTT
1 TCGCGTTGCGATTTTCA-TTT
*
93512 TCACGTTGCGATTTT
1 TCGCGTTGCGATTTT
93527 AAGTTCCAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 15 0.52
21 14 0.48
ACGTcount: A:0.13, C:0.20, G:0.22, T:0.45
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATTT
Found at i:95091 original size:14 final size:14
Alignment explanation
Indices: 95072--95107 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
95062 ATTGTTTAAT
95072 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
95086 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
95100 TGATTTGT
1 TGATTTGT
95108 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:95289 original size:19 final size:19
Alignment explanation
Indices: 95214--95279 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
95204 AAAAATGACT
*
95214 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
95233 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
95247 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
95266 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
95280 CTAAATTCGC
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
14 10 0.25
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 24 0.60
ACGTcount: A:0.45, C:0.21, G:0.23, T:0.11
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:95331 original size:33 final size:33
Alignment explanation
Indices: 95289--95448 Score: 275
Period size: 33 Copynumber: 4.8 Consensus size: 33
95279 ACTAAATTCG
*
95289 CGTTGCGATTTTCATTTCGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
95322 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
95355 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
* *
95388 CGTTGCGATTTTCATTTCGCATTGCAATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
95421 CGTTGCGATTTTCATTTTGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
95449 AGTCATTTCC
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 122 1.00
ACGTcount: A:0.12, C:0.24, G:0.18, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:95395 original size:14 final size:14
Alignment explanation
Indices: 95310--95430 Score: 53
Period size: 14 Copynumber: 7.6 Consensus size: 14
95300 TCATTTCGCT
*
95310 TTGCGATTCCCTCG
1 TTGCGATTCTCTCG
*
95324 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
*
95341 CATTGCGATTCCCTCG
1 --TTGCGATTCTCTCG
*
95357 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
95374 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
*
95390 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
*
95407 CATTGCAATTCTCTCG
1 --TTGCGATTCTCTCG
95423 TTGCGATT
1 TTGCGATT
95431 TTCATTTTGC
Statistics
Matches: 81, Mismatches: 11, Indels: 30
0.66 0.09 0.25
Matches are distributed among these distances:
14 25 0.31
16 20 0.25
17 19 0.23
19 17 0.21
ACGTcount: A:0.12, C:0.26, G:0.18, T:0.44
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:95467 original size:20 final size:20
Alignment explanation
Indices: 95442--95514 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
95432 TCATTTTGCA
*
95442 TTGCGATAGTCATTTCCGCG
1 TTGCGATAGTCATTTCCGTG
* **
95462 TTGCGATAGACA-TTAAGATG
1 TTGCGATAGTCATTTCCG-TG
95482 ATTGCGA-ACGTCATTTCCGTG
1 -TTGCGATA-GTCATTTCCGTG
95503 TTGCGATAGTCA
1 TTGCGATAGTCA
95515 AATGAATGCC
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.07
20 23 0.56
21 12 0.29
22 3 0.07
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (20 bp):
TTGCGATAGTCATTTCCGTG
Found at i:98904 original size:20 final size:20
Alignment explanation
Indices: 98881--98987 Score: 126
Period size: 20 Copynumber: 5.3 Consensus size: 20
98871 AGAATCTCAT
98881 TGCGATTTAC-TAAATCGCAA
1 TGCGA-TTACGTAAATCGCAA
* *
98901 TGCGAATACGTAAATTGCAA
1 TGCGATTACGTAAATCGCAA
*
98921 TACGATTACGTAAATCGCAA
1 TGCGATTACGTAAATCGCAA
98941 TGCGATTACGTAAATCGCAA
1 TGCGATTACGTAAATCGCAA
* ** *
98961 CGCGAATTTGGGAAATCGCAA
1 TGCG-ATTACGTAAATCGCAA
98982 TGCGAT
1 TGCGAT
98988 AGTCAGAATC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
19 3 0.04
20 55 0.74
21 16 0.22
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (20 bp):
TGCGATTACGTAAATCGCAA
Found at i:99209 original size:25 final size:25
Alignment explanation
Indices: 99177--99244 Score: 136
Period size: 25 Copynumber: 2.7 Consensus size: 25
99167 AAAATAAAAT
99177 AAAATAAAATAAAATAAATCAAAGG
1 AAAATAAAATAAAATAAATCAAAGG
99202 AAAATAAAATAAAATAAATCAAAGG
1 AAAATAAAATAAAATAAATCAAAGG
99227 AAAATAAAATAAAATAAA
1 AAAATAAAATAAAATAAA
99245 AATATATCAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.75, C:0.03, G:0.06, T:0.16
Consensus pattern (25 bp):
AAAATAAAATAAAATAAATCAAAGG
Found at i:99248 original size:6 final size:5
Alignment explanation
Indices: 99167--99387 Score: 115
Period size: 5 Copynumber: 44.4 Consensus size: 5
99157 CAAAAGGGGA
**
99167 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT CAAAGG AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT
** * * **
99217 -AAAT CAAAGG AAAAT AAAAT AAAAT AAAA- ATATAT CAAAT -AAAT CAAAGG
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT A-AAAT AAAAT AAAAT -AAAAT
** *
99267 AAAA- AATGT AAAAAT AAACAT -AAA- AAAAT AAAA- AAAAT AAAAT ATAA-
1 AAAAT AAAAT -AAAAT AAA-AT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
* ** *
99314 AGAAT AAAA- AAATAT AAAGG AAAAT -AAAT CAAATAT AAAAAT GAAAT
1 AAAAT AAAAT AAA-AT AAAAT AAAAT AAAAT -AAA-AT -AAAAT AAAAT
*
99361 AAAAT AAAA- ATAAT AAAAAT AAAAT AA
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AA
99388 TAAATGAATC
Statistics
Matches: 164, Mismatches: 30, Indels: 44
0.69 0.13 0.18
Matches are distributed among these distances:
4 36 0.22
5 101 0.62
6 22 0.13
7 5 0.03
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:99295 original size:14 final size:14
Alignment explanation
Indices: 99276--99391 Score: 81
Period size: 16 Copynumber: 7.6 Consensus size: 14
99266 GAAAAAATGT
*
99276 AAAAATAAACATAA
1 AAAAATAAAAATAA
*
99290 AAAAATAAAAAAAA
1 AAAAATAAAAATAA
99304 TAAAATATAAAGAATAA
1 -AAAA-ATAAA-AATAA
**
99321 AAAAATATAAAGGAA
1 AAAAATA-AAAATAA
*
99336 AATAAATCAAATATAA
1 AA-AAAT-AAAAATAA
99352 AAATGAA-ATAAAATAA
1 AAA--AATA-AAAATAA
99368 AAATAATAAAAATAA
1 AAA-AATAAAAATAA
*
99383 AATAATAAA
1 AAAAATAAA
99392 TGAATCAAAG
Statistics
Matches: 81, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
14 18 0.22
15 25 0.31
16 31 0.38
17 7 0.09
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (14 bp):
AAAAATAAAAATAA
Found at i:99302 original size:23 final size:23
Alignment explanation
Indices: 99276--99331 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
99266 GAAAAAATGT
*
99276 AAAAATAAACATAAAAAAATAAA
1 AAAAATAAAAATAAAAAAATAAA
*
99299 AAAAAT-AAAATATAAAGAATAAA
1 AAAAATAAAAATA-AAAAAATAAA
99322 AAAATATAAA
1 AAAA-ATAAA
99332 GGAAAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 5 0.18
23 19 0.68
24 2 0.07
25 2 0.07
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (23 bp):
AAAAATAAAAATAAAAAAATAAA
Found at i:99380 original size:9 final size:9
Alignment explanation
Indices: 99286--99382 Score: 50
Period size: 8 Copynumber: 11.1 Consensus size: 9
99276 AAAAATAAAC
99286 ATAAAAA-A
1 ATAAAAATA
*
99294 ATAAAAAAA
1 ATAAAAATA
99303 AT-AAAAT-
1 ATAAAAATA
99310 ATAAAGAATA
1 ATAAA-AATA
99320 A-AAAAAT-
1 ATAAAAATA
99327 ATAAAGGAA-A
1 ATAAA--AATA
99337 ATAAATCAA-A
1 ATAAA--AATA
*
99347 TATAAAAATG
1 -ATAAAAATA
*
99357 A-AATAA-A
1 ATAAAAATA
99364 ATAAAAATA
1 ATAAAAATA
99373 ATAAAAATA
1 ATAAAAATA
99382 A
1 A
99383 AATAATAAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 23
0.70 0.07 0.23
Matches are distributed among these distances:
7 4 0.06
8 27 0.39
9 23 0.33
10 11 0.16
11 5 0.07
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (9 bp):
ATAAAAATA
Found at i:100433 original size:3 final size:3
Alignment explanation
Indices: 100425--100478 Score: 74
Period size: 3 Copynumber: 17.7 Consensus size: 3
100415 AAAAAAGAAT
*
100425 TAA TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA GTAA TAG
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
100471 TAA TAA TA
1 TAA TAA TA
100479 TATATTCTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 2 0.04
3 39 0.85
4 5 0.11
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:100502 original size:23 final size:25
Alignment explanation
Indices: 100471--100517 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
100461 AAAGTAATAG
*
100471 TAATAATATATA-TTCTAAAATATA
1 TAATAATATATATTTCAAAAATATA
100495 TAAT-ATATATATTTCAAAAATAT
1 TAATAATATATATTTCAAAAATAT
100518 TTTTTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
TAATAATATATATTTCAAAAATATA
Found at i:100703 original size:37 final size:37
Alignment explanation
Indices: 100555--100844 Score: 360
Period size: 37 Copynumber: 7.8 Consensus size: 37
100545 AAAAATTTCC
* *
100555 AAAACTATATATTTTAT-AGTTTTCAAAAAT-TATTTT
1 AAAACTATATATTATATAATTTTTCAAAAATGT-TTTT
100591 -AAA--A-ATATTATATAAGTTTTTCAAAAAAATGTTTTT
1 AAAACTATATATTATATAA-TTTTTC--AAAAATGTTTTT
*
100627 AAAATTATATATTATATAATTTTTCAAAAAATGTTTTT
1 AAAACTATATATTATATAATTTTTC-AAAAATGTTTTT
*
100665 AAAACTATATGTTATATAATTTTTCAAAAATGTTTTT
1 AAAACTATATATTATATAATTTTTCAAAAATGTTTTT
*
100702 AAAACTATATATTATATAATTTTTCAAAAATATTTTT
1 AAAACTATATATTATATAATTTTTCAAAAATGTTTTT
* *
100739 AAAACTATATATTATATAATTTTTCACAAATGTTTTA
1 AAAACTATATATTATATAATTTTTCAAAAATGTTTTT
* * * *
100776 AAAACTATATACTATATAAGTTTTC-AAATTGTTTTA
1 AAAACTATATATTATATAATTTTTCAAAAATGTTTTT
*
100812 AAAACTATATAATATATAAATGTTTTCAAAAAT
1 AAAACTATATATTATAT-AAT-TTTTCAAAAAT
100845 ATATATTATA
Statistics
Matches: 226, Mismatches: 16, Indels: 21
0.86 0.06 0.08
Matches are distributed among these distances:
32 8 0.04
33 2 0.01
34 5 0.02
35 3 0.01
36 35 0.15
37 110 0.49
38 41 0.18
39 11 0.05
40 11 0.05
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (37 bp):
AAAACTATATATTATATAATTTTTCAAAAATGTTTTT
Found at i:100835 original size:27 final size:27
Alignment explanation
Indices: 100805--100856 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
100795 GTTTTCAAAT
100805 TGTTTT-AAAAACTATATAATATATAAA
1 TGTTTTCAAAAA-TATATAATATATAAA
*
100832 TGTTTTCAAAAATATATATTATATA
1 TGTTTTCAAAAATATATAATATATA
100857 TATTTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (27 bp):
TGTTTTCAAAAATATATAATATATAAA
Found at i:100836 original size:63 final size:62
Alignment explanation
Indices: 100766--100905 Score: 169
Period size: 63 Copynumber: 2.2 Consensus size: 62
100756 AATTTTTCAC
** * *
100766 AAATGTTTTAAAAACTATATACTATATA-AGTTTTCAAAT-TGTTTTAAAAACTATATAATATAT
1 AAATGTTTTAAAAA-TATATACTATATATA-TTTAAAAATAT-TTTCAAAAACTATATAACATAT
*
100829 AAATGTTTTCAAAAATATATATTATATATATTTAAAAATATTTTCAAAAACTATATAACATAT
1 AAATGTTTT-AAAAATATATACTATATATATTTAAAAATATTTTCAAAAACTATATAACATAT
*
100892 AAAT-TTTCAAAAAT
1 AAATGTTTTAAAAAT
100906 TATTTTTTGA
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
61 6 0.09
62 3 0.04
63 52 0.76
64 7 0.10
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.41
Consensus pattern (62 bp):
AAATGTTTTAAAAATATATACTATATATATTTAAAAATATTTTCAAAAACTATATAACATAT
Found at i:100857 original size:36 final size:36
Alignment explanation
Indices: 100817--100885 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 36
100807 TTTTAAAAAC
* *
100817 TATATA-ATATATAAATGTTTTCAAAAA-TATATAT
1 TATATATATATAAAAATATTTTCAAAAACTATATAT
*
100851 TATATATATTTAAAAATATTTTCAAAAACTATATA
1 TATATATATATAAAAATATTTTCAAAAACTATATA
100886 ACATATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 6 0.20
35 18 0.60
36 6 0.20
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (36 bp):
TATATATATATAAAAATATTTTCAAAAACTATATAT
Found at i:100892 original size:36 final size:37
Alignment explanation
Indices: 100829--100911 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 37
100819 TATAATATAT
* ** *
100829 AAATGTTTTCAAAAATATATATTATATATA-TTT-AA
1 AAATATTTTCAAAAATATATAACATATAAATTTTCAA
100864 AAATATTTTCAAAAACTATATAACATATAAATTTTCAA
1 AAATATTTTCAAAAA-TATATAACATATAAATTTTCAA
100902 AAATTATTTT
1 AAA-TATTTT
100912 TTGAAAATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
35 14 0.35
36 12 0.30
37 3 0.08
38 5 0.12
39 6 0.15
ACGTcount: A:0.49, C:0.06, G:0.01, T:0.43
Consensus pattern (37 bp):
AAATATTTTCAAAAATATATAACATATAAATTTTCAA
Found at i:101705 original size:84 final size:84
Alignment explanation
Indices: 101616--102246 Score: 707
Period size: 84 Copynumber: 7.6 Consensus size: 84
101606 GTTTACCTCT
* * *
101616 GAGCTGAGTGTAATCGAACTCGAAGGT-TTTCGGTTGGCAGATAGCCC-TCATCGACTTAAGCTA
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTT-GGTTGGCAGATAACCCTTC-TCGACTTAAGCTA
*
101679 TGCTGTAAATGATGTGCCTTG
64 TGCTGCAAATGATGTGCCTTG
* *
101700 GAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGCTATG
* *
101765 TTGCAAATGATGTGTCTTG
66 CTGCAAATGATGTGCCTTG
* *
101784 GAGCTGAGCGTAGTCGAACTCGAAGGTATTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGCTATG
* *
101849 CTACAAATGATATGCCTTG
66 CTGCAAATGATGTGCCTTG
* * * * *
101868 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTAT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTCGACTTAAGCTAT
* * *
101932 GCTGTAAATAATGTGCCCTCG
65 GCTGCAAATGATGTG-CCTTG
* * * * *
101953 AAGCTGAGTGTAATCGAACTTGAGGGTC--T--TTGGCAGATAACCCTTCTCGACTTAAGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGCTATG
*
102014 CTGCAAATGATGTGTCTTG
66 CTGCAAATGATGTGCCTTG
* * * * * * *
102033 GAGCTGAGCATAGTCGAACTCAAAGGTCTTTGGTT-ACAGATAACCCTTCTAGCCTTGAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGCTATG
* *
102097 CTGTAAATGATGTGCCCTCG
66 CTGCAAATGATGTG-CCTTG
* * * * * *
102117 AAGCT-ATGTGTAATCGAACTC-AAGGGTC--T--TTGGCAGATATCCCTTTTAGACTTAAGCTA
1 GAGCTGA-GCGTAGTCGAACTCGAA-GGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGCTA
*
102176 TGCTGCAAATAATGTGCCTTG
64 TGCTGCAAATGATGTGCCTTG
*
102197 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTT-ATTGGCAGATAACCCTTCT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCT
102247 AGCCTTGAGT
Statistics
Matches: 458, Mismatches: 71, Indels: 37
0.81 0.13 0.07
Matches are distributed among these distances:
80 50 0.11
81 76 0.17
82 4 0.01
83 56 0.12
84 235 0.51
85 37 0.08
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (84 bp):
GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGCTATG
CTGCAAATGATGTGCCTTG
Found at i:101810 original size:168 final size:166
Alignment explanation
Indices: 101563--102258 Score: 836
Period size: 164 Copynumber: 4.2 Consensus size: 166
101553 GACTAATTTA
* * * * * **
101563 TTGACAGATAGCCCTTCTTGCCTTGAGCTATTCTGTAAAT-TTGGTTTACCTCTG-AGCTGAGTG
1 TTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT-G-TGCCCTC-GAAGCTGAGTG
* * *
101626 TAATCGAACTCGAAGGTTTTCGGTTGGCAGATAGCCC-TCATCGACTTAAGCTATGCTGTAAATG
63 TAATCGAACTCGAAGG--GTC-GTTGGCAGATAACCCTTC-TCGACTTAAGCTATGCTGCAAATG
*
101690 ATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGG
124 ATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
* * * * * * * * * * * * *
101733 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGTTGCAAATGATGTG-TCTTGGAGCTGAGCGTAG
1 TTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAA
* * * * *
101797 TCGAACTCGAAGGTATTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATAT
66 TCGAACTCGAAGG---GTCGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGT
101862 GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGG
128 GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGG
*
101902 -TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATAATGTGCCCTCGAAGCTGAGTGTAA
1 TTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAA
* * *
101966 TCGAACTTG-AGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGTC
66 TCGAACTCGAAGGGTCGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
* *
102030 TTGGAGCTGAGCATAGTCGAACTCAAAGGTCTTTGG
131 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
102066 TT-ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCT-ATGTGTA
1 TTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGA-GTGTA
* * * * *
102129 ATCGAACTC-AAGGGTCTTTGGCAGATATCCCTTTTAGACTTAAGCTATGCTGCAAATAATGTGC
65 ATCGAACTCGAAGGGTCGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGC
*
102193 CTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT-A
130 CTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
*
102229 TTGGCAGATAACCCTTCTAGCCTTGAGTTA
1 TTGACAGATAACCCTTCTAGCCTTGAGTTA
102259 CACTGCAAAT
Statistics
Matches: 460, Mismatches: 56, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
163 3 0.01
164 179 0.39
165 75 0.16
167 1 0.00
168 135 0.29
169 32 0.07
170 34 0.07
171 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (166 bp):
TTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAA
TCGAACTCGAAGGGTCGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
Found at i:105144 original size:17 final size:16
Alignment explanation
Indices: 105122--105155 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
105112 TAAAAACAGT
105122 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
105139 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
105155 A
1 A
105156 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:115252 original size:17 final size:16
Alignment explanation
Indices: 115230--115263 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
115220 TAAAAACAGT
115230 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
115247 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
115263 A
1 A
115264 TCCCCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:118032 original size:17 final size:17
Alignment explanation
Indices: 118010--118051 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
118000 CTGTTGACTG
118010 TTGACCGGCGTTAACCA
1 TTGACCGGCGTTAACCA
*
118027 TTGACCGGCGTTAACCG
1 TTGACCGGCGTTAACCA
118044 TTGACCGG
1 TTGACCGG
118052 GCATTAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (17 bp):
TTGACCGGCGTTAACCA
Found at i:120567 original size:80 final size:80
Alignment explanation
Indices: 120434--120593 Score: 311
Period size: 80 Copynumber: 2.0 Consensus size: 80
120424 TCAGTCAACA
120434 AACTCTTCTAATAGTGATTCTAATTTCCGACACTCTATCGGTAAACTGAAGATTTGTGTTTCTCT
1 AACTCTTCTAATAGTGATTCTAATTTCCGACACTCTATCGGTAAACTGAAGATTTGTGTTTCTCT
120499 GCCCGATAAGATTAT
66 GCCCGATAAGATTAT
*
120514 AACTCTTCTAATAGTGATTCTAATTTCCGGCACTCTATCGGTAAACTGAAGATTTGTGTTTCTCT
1 AACTCTTCTAATAGTGATTCTAATTTCCGACACTCTATCGGTAAACTGAAGATTTGTGTTTCTCT
120579 GCCCGATAAGATTAT
66 GCCCGATAAGATTAT
120594 CTTGTATCTC
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (80 bp):
AACTCTTCTAATAGTGATTCTAATTTCCGACACTCTATCGGTAAACTGAAGATTTGTGTTTCTCT
GCCCGATAAGATTAT
Found at i:120751 original size:24 final size:24
Alignment explanation
Indices: 120669--120763 Score: 75
Period size: 24 Copynumber: 4.0 Consensus size: 24
120659 ATTTTTTATT
* * *
120669 TGAATCATGTTTTGACATCTGATT
1 TGAATTATGTTTTGATATCTGATC
* * * * *
120693 TGAAATCTGTTCTGAT-TCCTAACC
1 TGAATTATGTTTTGATAT-CTGATC
* *
120717 TGGATTCTGTTTTGATATCTGATC
1 TGAATTATGTTTTGATATCTGATC
*
120741 TGAATTATGTTTTGATTTCTGAT
1 TGAATTATGTTTTGATATCTGAT
120764 ATCTCGGTTT
Statistics
Matches: 53, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
23 1 0.02
24 51 0.96
25 1 0.02
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.47
Consensus pattern (24 bp):
TGAATTATGTTTTGATATCTGATC
Found at i:122215 original size:5 final size:5
Alignment explanation
Indices: 122205--122256 Score: 61
Period size: 5 Copynumber: 10.2 Consensus size: 5
122195 CAAAAGGGGA
**
122205 AAAAT AAAAT AAAAT AAAAT -AAAT CAAAGG AAAAT AAAAT AAAAT GAAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT -AAAAT
122256 A
1 A
122257 TATCAAATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
4 4 0.10
5 29 0.73
6 7 0.17
ACGTcount: A:0.75, C:0.02, G:0.06, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:122289 original size:40 final size:41
Alignment explanation
Indices: 122204--122403 Score: 110
Period size: 40 Copynumber: 4.9 Consensus size: 41
122194 GCAAAAGGGG
122204 AAAAATAAAATAAAATAAAATAAATCAAAGGAAAATAAAAT
1 AAAAATAAAATAAAATAAAATAAATCAAAGGAAAATAAAAT
* * * **
122245 -AAAATGAAAAT-ATATCAAATAAATCAAAGGGAAA-AATGT
1 AAAAAT-AAAATAAAATAAAATAAATCAAAGGAAAATAAAAT
* * ** *
122284 AAAAATAAACATAAAAAATAAGATAAA-GAATAAAAAAATATAAAG
1 AAAAATAAA-AT--AAAATAAAATAAATCAA-AGGAAAATA-AAAT
* * * * *
122329 GAAAAT-AAATCAAATAGAA-AAATGAAA-TAAAATAAAA-
1 AAAAATAAAATAAAATAAAATAAATCAAAGGAAAATAAAAT
* *
122366 AATAATAATAATAAAATAATAAATGAATCAAAGGAAAA
1 AAAAATAA-AATAAAAT-A-AAATAAATCAAAGGAAAA
122404 AATGAATATT
Statistics
Matches: 116, Mismatches: 27, Indels: 30
0.67 0.16 0.17
Matches are distributed among these distances:
37 4 0.03
38 4 0.03
39 19 0.16
40 37 0.32
41 16 0.14
42 8 0.07
43 19 0.16
44 3 0.03
45 6 0.05
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (41 bp):
AAAAATAAAATAAAATAAAATAAATCAAAGGAAAATAAAAT
Found at i:122366 original size:17 final size:16
Alignment explanation
Indices: 122286--122389 Score: 72
Period size: 17 Copynumber: 6.2 Consensus size: 16
122276 AAAAATGTAA
122286 AAATAAACATAAAAAAT
1 AAATAAA-ATAAAAAAT
*
122303 AAGATAAAGA-ATAAAA-
1 AA-ATAAA-ATAAAAAAT
**
122319 AAATATAAA-GGAAAAT
1 AAATA-AAATAAAAAAT
*
122335 AAATCAAATAGAAAAAT
1 AAATAAAATA-AAAAAT
122352 GAAATAAAATAAAAAAT
1 -AAATAAAATAAAAAAT
122369 -AATAATAATAAAATAAT
1 AAATAA-AATAAAA-AAT
122386 AAAT
1 AAAT
122390 GAATCAAAGG
Statistics
Matches: 70, Mismatches: 8, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
15 16 0.23
16 15 0.21
17 21 0.30
18 18 0.26
ACGTcount: A:0.73, C:0.02, G:0.06, T:0.19
Consensus pattern (16 bp):
AAATAAAATAAAAAAT
Found at i:122399 original size:70 final size:68
Alignment explanation
Indices: 122261--122403 Score: 157
Period size: 70 Copynumber: 2.0 Consensus size: 68
122251 AAAATATATC
* * * *
122261 AAATAAATCAAAGGGAAAAATGTAAAAATAAACATAAAAAATAAGATAAAGAATAAAAAAATATA
1 AAATAAATCAAAGAGAAAAATG--AAAATAAACATAAAAAATAAAATAAAAAATAAAAAAATACA
122326 AAGGA
64 AAGGA
*
122331 AAATAAATCAAATAGAAAAATG-AAATAAA-ATAAAAAATAATAATAATAAAATAATAAATGAAT
1 AAATAAATCAAAGAGAAAAATGAAAATAAACATAAAAAATAA-AATAA-AAAATAA-AAA--AAT
122394 -CAAAGGA
61 ACAAAGGA
122401 AAA
1 AAA
122404 AATGAATATT
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
66 11 0.17
67 11 0.17
68 6 0.10
69 3 0.05
70 29 0.46
71 3 0.05
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.17
Consensus pattern (68 bp):
AAATAAATCAAAGAGAAAAATGAAAATAAACATAAAAAATAAAATAAAAAATAAAAAAATACAAA
GGA
Found at i:123436 original size:3 final size:3
Alignment explanation
Indices: 123425--123466 Score: 50
Period size: 3 Copynumber: 13.7 Consensus size: 3
123415 AAAAAAGAAT
*
123425 TAA TAAA TAA TAA TAA TAA TAA TAA -AA GTAA TAG TAA TAA TA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TA
123467 TATATTCTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 27 0.79
4 5 0.15
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:123490 original size:23 final size:25
Alignment explanation
Indices: 123459--123505 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
123449 AAAGTAATAG
*
123459 TAATAATATATA-TTCTAAAATATA
1 TAATAATATATATTTCAAAAATATA
123483 TAAT-ATATATATTTCAAAAATAT
1 TAATAATATATATTTCAAAAATAT
123506 TTTTTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
TAATAATATATATTTCAAAAATATA
Found at i:123517 original size:38 final size:37
Alignment explanation
Indices: 123475--123816 Score: 190
Period size: 37 Copynumber: 9.5 Consensus size: 37
123465 TATATATTCT
*
123475 AAAATATATAATATATATATTTCAAAAATATTTTTTTA
1 AAAATATATATTATATATATTTCAAAAA-ATTTTTTTA
**
123513 AAAAT-TATA--AGT-TATA-TT-AAAAAA--TTTCCA
1 AAAATATATATTA-TATATATTTCAAAAAATTTTTTTA
* *
123543 AAACTATATATTGTATAGT-TTTC--AAAATTTATTTT-
1 AAAATATATATTATATA-TATTTCAAAAAATTT-TTTTA
* *
123578 AAAATAT-TA-TATA-AGTTTTTCAAAAAATGTTTTTA
1 AAAATATATATTATATA-TATTTCAAAAAATTTTTTTA
* * * *
123613 AAATTATATATTATATAATTTTTTAAAAAATGTTTTTA
1 AAAATATATATTATAT-ATATTTCAAAAAATTTTTTTA
* ** *
123651 AAACTATATATTATATA-ATTTTTTAAAAATGTTTTTA
1 AAAATATATATTATATATA-TTTCAAAAAATTTTTTTA
* * *
123688 AAACTATATATTATATAATTTTTC-AAAAATATTTTTA
1 AAAATATATATTATAT-ATATTTCAAAAAATTTTTTTA
* * * *
123725 AAATTATATATTATATAATTTTTC-ACAAA-TGTTTTA
1 AAAATATATATTATAT-ATATTTCAAAAAATTTTTTTA
*
123761 AAAACTATATACTATATA-AGTTTTC--AAAA-TTTTTTA
1 AAAA-TATATATTATATATA--TTTCAAAAAATTTTTTTA
*
123797 AAAACTATATAATATATATA
1 AAAA-TATATATTATATATA
123817 AATATTTTCA
Statistics
Matches: 251, Mismatches: 27, Indels: 53
0.76 0.08 0.16
Matches are distributed among these distances:
30 8 0.03
31 4 0.02
32 5 0.02
33 18 0.07
34 11 0.04
35 24 0.10
36 40 0.16
37 97 0.39
38 43 0.17
39 1 0.00
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (37 bp):
AAAATATATATTATATATATTTCAAAAAATTTTTTTA
Found at i:123673 original size:37 final size:37
Alignment explanation
Indices: 123581--123814 Score: 310
Period size: 37 Copynumber: 6.3 Consensus size: 37
123571 TTATTTTAAA
*
123581 ATATTATATAAGTTTTTCAAAAAATGTTTTTAAAATTAT
1 ATATTATATAA-TTTTT-AAAAAATGTTTTTAAAACTAT
123620 ATATTATATAATTTTTTAAAAAATGTTTTTAAAACTAT
1 ATATTATATAA-TTTTTAAAAAATGTTTTTAAAACTAT
*
123658 ATATTATATAATTTTTTAAAAATGTTTTTAAAACTAT
1 ATATTATATAATTTTTAAAAAATGTTTTTAAAACTAT
* * *
123695 ATATTATATAATTTTTCAAAAATATTTTTAAAATTAT
1 ATATTATATAATTTTTAAAAAATGTTTTTAAAACTAT
* * *
123732 ATATTATATAATTTTTCACAAATGTTTTAAAAACTAT
1 ATATTATATAATTTTTAAAAAATGTTTTTAAAACTAT
* * *
123769 ATACTATATAAGTTTT-CAAAAT-TTTTTAAAAACTAT
1 ATATTATATAATTTTTAAAAAATGTTTTT-AAAACTAT
*
123805 ATAATATATA
1 ATATTATATA
123815 TAAATATTTT
Statistics
Matches: 178, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
35 4 0.02
36 21 0.12
37 106 0.60
38 31 0.17
39 16 0.09
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.48
Consensus pattern (37 bp):
ATATTATATAATTTTTAAAAAATGTTTTTAAAACTAT
Found at i:123755 original size:74 final size:72
Alignment explanation
Indices: 123542--123918 Score: 332
Period size: 74 Copynumber: 5.2 Consensus size: 72
123532 AAAAATTTCC
* * * *
123542 AAAACTATATATTGTAT-AGTTTTC-AAAATTTATTTTAAAATAT-TATATA-AGTTTTTCAAAA
1 AAAACTATATATTATATAATTTTTCAAAAATAT-TTTTAAAATATATATATATAATTTTTC-AAA
123603 AATGTTTTT
64 AATGTTTTT
* * * *
123612 AAAATTATATATTATATAATTTTTTAAAAAATGTTTTTAAAACTATATATTATATAATTTTTTAA
1 AAAACTATATATTATATAA-TTTTTCAAAAATATTTTTAAAA-TATATA-TATATAATTTTTCAA
123677 AAATGTTTTT
63 AAATGTTTTT
*
123687 AAAACTATATATTATATAATTTTTCAAAAATATTTTTAAAATTATATATTATATAATTTTTCACA
1 AAAACTATATATTATATAATTTTTCAAAAATATTTTTAAAA-TATATA-TATATAATTTTTCAAA
*
123752 AATGTTTTA
64 AATGTTTTT
* * * *
123761 AAAACTATATACTATATAAGTTTTC-AAAAT-TTTTTAAAA-ACTATATA-AT-A--TAT-ATAA
1 AAAACTATATATTATATAATTTTTCAAAAATATTTTTAAAATA-TATATATATAATTTTTCAAAA
* *
123818 ATATTTTC
65 ATGTTTTT
* * * *
123826 AAAACTATATATTATAT-ATATTT-AAAAATATTTTCAAAAGCTATATAACATATAAATTTTCAA
1 AAAACTATATATTATATAATTTTTCAAAAATATTTTTAAAA--TATAT-ATATATAATTTTTCAA
*
123889 AAATCTTTTTCT
63 AAAT-GTTTT-T
*
123901 GAAAATTATATATTATAT
1 -AAAACTATATATTATAT
123919 TTTGACAAAA
Statistics
Matches: 255, Mismatches: 30, Indels: 38
0.79 0.09 0.12
Matches are distributed among these distances:
64 9 0.04
65 33 0.13
66 2 0.01
67 3 0.01
68 4 0.02
69 4 0.02
70 19 0.07
71 5 0.02
72 23 0.09
73 19 0.07
74 78 0.31
75 34 0.13
76 22 0.09
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (72 bp):
AAAACTATATATTATATAATTTTTCAAAAATATTTTTAAAATATATATATATAATTTTTCAAAAA
TGTTTTT
Found at i:123819 original size:29 final size:29
Alignment explanation
Indices: 123787--123845 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
123777 TAAGTTTTCA
*
123787 AAATTTTTTAAAAACTATATAATATATAT
1 AAATATTTTAAAAACTATATAATATATAT
* *
123816 AAATATTTTCAAAACTATATATTATATAT
1 AAATATTTTAAAAACTATATAATATATAT
123845 A
1 A
123846 TTTAAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (29 bp):
AAATATTTTAAAAACTATATAATATATAT
Found at i:123833 original size:65 final size:65
Alignment explanation
Indices: 123751--123879 Score: 163
Period size: 65 Copynumber: 2.0 Consensus size: 65
123741 AATTTTTCAC
* * * *
123751 AAATGTTTTAAAAACTATATACTATATA-AGTTTTCAAAAT-TTTTTAAAAACTATATAATATAT
1 AAATATTTTAAAAACTATATACTATATATA--TTTAAAAATATTTTCAAAAACTATATAACATAT
123814 AT
64 AT
* * *
123816 AAATATTTTCAAAACTATATATTATATATATTTAAAAATATTTTCAAAAGCTATATAACATATA
1 AAATATTTTAAAAACTATATACTATATATATTTAAAAATATTTTCAAAAACTATATAACATATA
123880 AATTTTCAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
64 8 0.15
65 46 0.84
66 1 0.02
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (65 bp):
AAATATTTTAAAAACTATATACTATATATATTTAAAAATATTTTCAAAAACTATATAACATATAT
Found at i:123853 original size:24 final size:24
Alignment explanation
Indices: 123808--123853 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
123798 AAACTATATA
*
123808 ATATATATAAATATTTTCAAAACT
1 ATATATATAAATATTTTAAAAACT
*
123832 ATATAT-TATATATATTTAAAAA
1 ATATATATAAATAT-TTTAAAAA
123854 TATTTTCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (24 bp):
ATATATATAAATATTTTAAAAACT
Found at i:123879 original size:36 final size:35
Alignment explanation
Indices: 123816--123884 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
123806 TAATATATAT
** *
123816 AAATATTTTCAAAACTATATATTATATATATTTAA
1 AAATATTTTCAAAACTATATAACATATAAATTTAA
123851 AAATATTTTCAAAAGCTATATAACATATAAATTT
1 AAATATTTTCAAAA-CTATATAACATATAAATTT
123885 TCAAAAATCT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 14 0.47
36 16 0.53
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.42
Consensus pattern (35 bp):
AAATATTTTCAAAACTATATAACATATAAATTTAA
Found at i:126541 original size:2 final size:2
Alignment explanation
Indices: 126536--126573 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
126526 GAAAAACTTG
126536 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
126574 CTTGAACACA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:130787 original size:83 final size:83
Alignment explanation
Indices: 130645--130823 Score: 349
Period size: 83 Copynumber: 2.2 Consensus size: 83
130635 AAATTTATGA
130645 ACCATTTATCGATTCCCCTCTTATTTCTTTAAAACGAAAATATTAGATTGAAAGCAATACATATA
1 ACCATTTATCGATTCCCCTCTTATTTCTTTAAAACGAAAATATTAGATTGAAAGCAATACATATA
130710 TGTGATCAATATTATTAG
66 TGTGATCAATATTATTAG
*
130728 ACCATTTATCGATTCCCCTCTTATTTCTTTAAAACGAAAATATTAGATTGAAAGTAATACATATA
1 ACCATTTATCGATTCCCCTCTTATTTCTTTAAAACGAAAATATTAGATTGAAAGCAATACATATA
130793 TGTGATCAATATTATTAG
66 TGTGATCAATATTATTAG
130811 ACCATTTATCGAT
1 ACCATTTATCGAT
130824 AACTAGATGG
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 95 1.00
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (83 bp):
ACCATTTATCGATTCCCCTCTTATTTCTTTAAAACGAAAATATTAGATTGAAAGCAATACATATA
TGTGATCAATATTATTAG
Found at i:134612 original size:21 final size:21
Alignment explanation
Indices: 134588--134652 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
134578 AATACAAGCA
*
134588 AGAGTCGAAGAGAAGCTTGAG
1 AGAGTCGAAGAGAAACTTGAG
134609 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
134630 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
134651 AG
1 AG
134653 GCATAAGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.40, C:0.11, G:0.34, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:137171 original size:201 final size:201
Alignment explanation
Indices: 136842--137941 Score: 1541
Period size: 201 Copynumber: 5.6 Consensus size: 201
136832 ACATATGCAT
* ** * * *
136842 CCATAAGTATAATGTAATAGGTAAATTTTTAATGTAACTGGTATAAATATATCGGTTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* * *
136907 GAATATGTTTACAACATGTATCGACACTTTTTTAATTTTGTATCGATACTTTTGGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
*
136972 ATGCCAAAAAGGGTGAACGCATAAAATGTCGATACATTTTCAAAAAGTGTCGATTCCAGAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATTCCAGAAACAT
137037 CGAAAC
196 CGAAAC
* * * *
137043 CCATAATTATAATGTAATAGGTAAATTTACAATATAACCGGTATAAATATATCAAATTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
*
137108 TAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
* * *
137173 ATACCAAAAAGGGTGAACGCATAAAGTGTCGAT-C----CCAGAAA----C-A-T-CA-AAAC--
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATTCCAGAAACAT
*
137223 CTATAA-
196 CGA-AAC
** * ** * * *
137229 TTATAATGTA-ATAGGTAA-ATTTACAATGT--AAC-----CGGTATAAATATATCGATTTTATG
1 CCATAAT-TATA-ATGTAATAGGTA-AATTTACAATGTAACCGGTATAAATATACCGATTTTATG
*
137285 AGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGCCGATACTTTTGGTCCAGAA
63 AGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAA
* *
137350 TGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTTAAAAAGTGTCGATCCCAGAAA
128 TGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATTCCAGAAA
137415 CATCGAAAC
193 CATCGAAAC
* *
137424 CCATAATTATAATGTAATATGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAAA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* *
137489 GAATAGGTCTACAATATGTATCGACATTTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATG
66 GAATAGGTCTACAACATGTATCGACA-CTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATG
137554 GATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGA-TCCTAGAAAC
130 GATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATTCC-AGAAAC
137618 ATCGAAAC
194 ATCGAAAC
* * * *
137626 CCATAATTATAATGTAATAGCTAAATTCACAATGTAATCGGTATAAATATGCCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* *
137691 GAATAGGTCTACAACATGTATCGACACGTTTTTAATTTTGTGTCGATACTTTTGGTCCAAAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
* * *
137756 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAATGTCGATCCCAAAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATTCCAGAAACAT
*
137821 CAAAAC
196 CGAAAC
* *
137827 CCATAATTATAATGTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
*
137892 GAATAGGTCTACAACATGTATCGACACATTTTTAATTTTGTGTCGATACT
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACT
137942 AATTTAAATA
Statistics
Matches: 799, Mismatches: 68, Indels: 64
0.86 0.07 0.07
Matches are distributed among these distances:
180 120 0.15
181 1 0.00
185 6 0.01
186 11 0.01
187 13 0.02
188 4 0.01
189 3 0.00
190 2 0.00
191 1 0.00
192 3 0.00
193 4 0.01
194 13 0.02
195 12 0.02
196 7 0.01
200 1 0.00
201 409 0.51
202 189 0.24
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (201 bp):
CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATTCCAGAAACAT
CGAAAC
Found at i:139434 original size:12 final size:12
Alignment explanation
Indices: 139414--139465 Score: 77
Period size: 12 Copynumber: 4.3 Consensus size: 12
139404 CAAGCGGTCA
*
139414 ATGAAGATGAAG
1 ATGACGATGAAG
139426 ATGACGATGAAG
1 ATGACGATGAAG
*
139438 ATGATGATGAAG
1 ATGACGATGAAG
*
139450 ATGACGATGATG
1 ATGACGATGAAG
139462 ATGA
1 ATGA
139466 TGATCCAAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.42, C:0.04, G:0.33, T:0.21
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:139437 original size:18 final size:18
Alignment explanation
Indices: 139414--139465 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
139404 CAAGCGGTCA
* *
139414 ATGAAGATGAAGATGACG
1 ATGAAGATGATGATGAAG
139432 ATGAAGATGATGATGAAG
1 ATGAAGATGATGATGAAG
*
139450 ATGACGATGATGATGA
1 ATGAAGATGATGATGA
139466 TGATCCAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.42, C:0.04, G:0.33, T:0.21
Consensus pattern (18 bp):
ATGAAGATGATGATGAAG
Found at i:139469 original size:6 final size:6
Alignment explanation
Indices: 139414--139465 Score: 68
Period size: 6 Copynumber: 8.7 Consensus size: 6
139404 CAAGCGGTCA
* * * *
139414 ATGAAG ATGAAG ATGACG ATGAAG ATGATG ATGAAG ATGACG ATGATG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
139462 ATGA
1 ATGA
139466 TGATCCAAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.42, C:0.04, G:0.33, T:0.21
Consensus pattern (6 bp):
ATGAAG
Found at i:141162 original size:251 final size:251
Alignment explanation
Indices: 140736--141229 Score: 710
Period size: 251 Copynumber: 2.0 Consensus size: 251
140726 CTTAAAGTTT
* *
140736 CCCATAAAGTGGCGATCCATATATAAAAAGTAACGACCCAAAAAACATCGAAACCCATAATTATA
1 CCCATAAAGTAGCGATACATATATAAAAAGTAACGACCCAAAAAACATCGAAACCCATAATTATA
* * *
140801 ATGTAATGGGTAATTTTTCAATATAACCAGTATAAATATATCGGTTTTATGAAAAATATGTCTAC
66 ATGTAATCGGTAATTTTTCAACATAACCAGTATAAATATACCGGTTTTATGAAAAATATGTCTAC
* *
140866 AACATTTATCGACACTTATTAGTATTGTGTCGATACATTTTGTCCATAATGGATGCCAAAAAGGG
131 AACATGTATCGACACTTATTAATATTGTGTCGATACATTTTGTCCATAATGGATGCCAAAAAGGG
* *
140931 GGAAC-CTACAAAGTGTCGATACAGTTTCATAAAGTTTCGAT-CCAAAAGGGTTGCA
196 GGAACGC-ACAAAGTGTCGATACAGTTTCAAAAAGTGTCGATCCCAAAAGGGTTGCA
* * * **
140986 CCCATAAAGTATCGATACATTTATTAAAAGTGTCGATCCC-AAAAACATCGAAACCCATAATTAT
1 CCCATAAAGTAGCGATACATATATAAAAAGTAACGA-CCCAAAAAACATCGAAACCCATAATTAT
* * *
141050 AATGTAATCGGTAATTTTGT-AACATAACCGGTATACATATACCGGTTTTATGAGAGAATATGTC
65 AATGTAATCGGTAATTTT-TCAACATAACCAGTATAAATATACCGGTTTTATGA-AAAATATGTC
* *
141114 TATAATATGTATCGACACTTATTAATATTGTGTCGATA-ATTTTTGTCCATAATGGATGCCAAAA
128 TACAACATGTATCGACACTTATTAATATTGTGTCGATACA-TTTTGTCCATAATGGATGCCAAAA
* * *
141178 AGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAA
192 AGGGGGAACGCACAAAGTGTCGATACAGTTTCAAAAAGTGTCGATCCCAAAA
141230 ATATCGAAAC
Statistics
Matches: 216, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
250 100 0.46
251 109 0.50
252 7 0.03
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (251 bp):
CCCATAAAGTAGCGATACATATATAAAAAGTAACGACCCAAAAAACATCGAAACCCATAATTATA
ATGTAATCGGTAATTTTTCAACATAACCAGTATAAATATACCGGTTTTATGAAAAATATGTCTAC
AACATGTATCGACACTTATTAATATTGTGTCGATACATTTTGTCCATAATGGATGCCAAAAAGGG
GGAACGCACAAAGTGTCGATACAGTTTCAAAAAGTGTCGATCCCAAAAGGGTTGCA
Found at i:144350 original size:200 final size:196
Alignment explanation
Indices: 143865--144595 Score: 733
Period size: 201 Copynumber: 3.6 Consensus size: 196
143855 ACCTAAATAT
* * *
143865 GTGTCGATACATTT-TATACAAGTATCGA-CCCAAAAAACATCAAAACCAATAATTATAATGTAA
1 GTGTCGATACATTTATA-AAAAGTATCGATCCC-AAAAACATCGAAACCGATAATTATAATGTAA
* * * * * * *
143928 TAGGTAAATTAACAATGTAAACGGTATAAATATACCAGTTAATTAGAAAACATGTCAACATAATG
64 TAGGTAAATTTACAATGTAACCGGTATAAATATACCATTTTATGAGAAAATAGGTC-ACATAATG
* * *
143993 TATCGACACTTGTGTAATTGGTGTCGATACTTATTGTCCA-AGATGAAT-GCACAAATGAGGTGC
128 TATCGACACTTGT-TAATTTGTGTCGATACTT-TTGTCCAGA-ATGAATACCA-AAAAG-GGTGC
144056 -ACTCATAAA
188 AAC-CATAAA
* *
144065 GTGTCGATACATTTATTAAAAGTATTCGATCCCAAAAACATCGAAACCGATAATTATAATGTATT
1 GTGTCGATACATTTATAAAAAGTA-TCGATCCCAAAAACATCGAAACCGATAATTATAATGTAAT
* * *
144130 AGGTAAATTTACAATGTAACCGATATAAATATACCAATTTTATGATAAAATAGGTCAGCATAAAG
65 AGGTAAATTTACAATGTAACCGGTATAAATATACC-ATTTTATGAGAAAATAGGTCA-CATAATG
*
144195 TATCGACACTTGATAAATTTGTGTCGATACTTTTGGTCCAGAATGAATACCAAAAAGGGTGCAAC
128 TATCGACACTTG-TTAATTTGTGTCGATACTTTT-GTCCAGAATGAATACCAAAAAGGGTGCAAC
144260 CATAAA
191 CATAAA
* * * *
144266 GTGTCGATACATTTATAAAAAGTATTGATCCCGAAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
* * * * *
144331 GGTAAATTTTCAATGTAACCGGTAT-ATTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGT
66 GGTAAATTTACAATGTAACCGGTATAAATATACC-ATTTTATGAGAAAATAGGTC-ACATAATGT
* * *
144395 ATCGACACGTTGTTAGTTTATGTCGATACTTTT-TCCAGAATGAAATATGAATGCCAAACCA-GG
129 ATCGACAC-TTGTTAATTTGTGTCGATACTTTTGTCCAGAATG--A-AT--A--CCAAA-AAGGG
*
144458 TGCAAGCATAAA
185 TGCAACCATAAA
* ** ** * * *
144470 GTGTTGATACATTTA-AAATTGTATCGATCTAAAAAACATCGTAACCGATAATAATAATGTTATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
* * * ** **
144534 GGTAAATTTACAATATTACTGGTATAAATATACCGGTTTACTTCGAAAATAGGTCAACATAA
66 GGTAAATTTACAATGTAACCGGTATAAATATACCATTTTA-TGAGAAAATAGGTC-ACATAA
144596 GCGCTACCTA
Statistics
Matches: 447, Mismatches: 62, Indels: 40
0.81 0.11 0.07
Matches are distributed among these distances:
197 9 0.02
199 57 0.13
200 85 0.19
201 103 0.23
202 69 0.15
203 68 0.15
204 55 0.12
205 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.30
Consensus pattern (196 bp):
GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
GGTAAATTTACAATGTAACCGGTATAAATATACCATTTTATGAGAAAATAGGTCACATAATGTAT
CGACACTTGTTAATTTGTGTCGATACTTTTGTCCAGAATGAATACCAAAAAGGGTGCAACCATAA
A
Found at i:144695 original size:87 final size:87
Alignment explanation
Indices: 144592--144752 Score: 304
Period size: 87 Copynumber: 1.9 Consensus size: 87
144582 ATAGGTCAAC
*
144592 ATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTTCC
1 ATAAGCGCTACATATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTTCC
144657 GGTTAAATGCCTATTTTATTAT
66 GGTTAAATGCCTATTTTATTAT
*
144679 ATAAGCGCTACATATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCC
1 ATAAGCGCTACATATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTTCC
144744 GGTTAAATG
66 GGTTAAATG
144753 ATACAACATT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (87 bp):
ATAAGCGCTACATATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTTCC
GGTTAAATGCCTATTTTATTAT
Done.