genome.fa.s2905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002905.1 Hibiscus syriacus cultivar Beakdansim tig00006001_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  233955

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1400--1454	24	2.3	25	81	6	60	32	16	21	29	1.95
5367--5410	11	4.1	10	82	11	52	15	11	0	72	1.11
10013--10042	12	2.5	12	100	0	60	23	6	0	70	1.11
10318--10357	12	3.3	12	82	10	55	67	0	15	17	1.23
10319--10364	23	2.0	22	88	12	67	67	0	13	19	1.23
13649--13681	16	2.1	16	100	0	66	33	18	6	42	1.75
19107--19161	24	2.3	25	81	6	60	32	16	21	29	1.95
24262--24305	14	3.0	15	81	15	56	77	11	11	0	1.00
24268--24310	19	2.3	19	88	8	61	81	6	11	0	0.87
24493--24545	16	3.3	15	80	19	54	15	15	0	69	1.19
24498--24551	17	3.1	17	82	17	58	14	14	0	70	1.17
28901--28946	18	2.6	17	83	10	56	82	4	8	4	0.93
35200--35243	6	7.2	6	80	14	54	81	2	15	0	0.78
35197--35243	25	1.9	24	87	12	69	80	4	14	0	0.85
35197--35243	12	3.8	12	83	10	60	80	4	14	0	0.85
35200--35240	19	2.3	19	83	8	50	82	2	14	0	0.76
37717--37761	20	2.2	20	84	4	54	28	15	6	48	1.70
39425--39467	16	2.8	16	86	10	54	74	6	16	2	1.14
41253--41357	36	2.9	36	84	0	156	27	35	3	33	1.75
41737--41783	25	2.0	24	84	16	62	74	8	17	0	1.05
45778--45883	37	2.9	36	84	2	158	27	36	3	32	1.75
54500--54564	33	2.0	33	81	6	78	27	1	36	33	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54537--54649	36	3.2	36	87	1	156	27	2	35	34	1.71
54554--54649	13	7.9	12	70	18	56	29	2	35	33	1.69
64531--64560	13	2.3	13	94	0	51	43	0	23	33	1.54
64698--64738	17	2.4	17	91	0	64	4	4	9	80	1.00
69465--69495	15	2.0	16	93	6	55	12	25	0	61	1.32
69795--69837	16	2.8	16	86	10	54	74	6	16	2	1.14
78503--78573	8	9.0	8	79	11	76	83	11	5	0	0.81
78505--78572	7	9.9	7	73	10	52	83	10	5	0	0.79
78504--78573	22	3.0	22	78	17	79	84	10	5	0	0.78
78527--78565	11	3.5	11	78	0	51	82	7	10	0	0.86
78513--78573	21	2.7	22	90	7	88	83	9	6	0	0.80
78520--78584	20	3.2	20	82	6	78	80	10	9	0	0.92
85973--86041	33	2.1	33	83	5	86	31	1	36	30	1.67
97509--97573	33	2.0	33	81	6	78	27	1	36	33	1.67
97546--97658	36	3.2	36	87	1	156	27	2	35	34	1.71
97563--97658	13	7.9	12	70	18	56	29	2	35	33	1.69
109651--109681	11	2.8	11	100	0	62	16	19	0	64	1.29
112527--112630	33	3.1	33	82	9	95	30	36	1	30	1.69
113043--113088	11	4.3	11	75	13	51	78	2	15	4	1.01
116999--117078	35	2.3	33	83	10	90	31	37	2	28	1.71
124259--124304	19	2.3	20	85	3	58	34	15	6	43	1.72
128119--128165	20	2.4	19	80	13	51	40	10	6	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129585--129611	12	2.2	12	100	0	54	44	7	33	14	1.73
129635--129685	23	2.3	22	83	9	68	60	13	13	11	1.59
129677--129710	10	3.3	10	92	8	59	82	0	17	0	0.67
129645--129710	21	3.0	21	80	4	51	66	9	16	7	1.42
134972--135013	20	2.1	19	86	8	57	0	9	9	80	0.89
134972--135045	36	2.1	34	83	14	89	0	8	10	81	0.89
134986--135042	15	3.8	15	86	9	73	0	7	10	82	0.84
141830--141941	36	3.2	35	83	3	127	27	33	4	34	1.77
141830--141917	35	2.5	36	87	3	108	28	35	4	31	1.77
142334--142374	13	3.2	12	83	10	55	80	0	19	0	0.71
144330--144442	36	3.2	36	92	1	174	32	36	3	27	1.74
144330--144428	13	8.3	11	71	23	67	31	36	3	29	1.73
144342--144481	36	4.1	33	83	9	97	30	36	2	30	1.72
152453--152528	36	2.2	35	90	4	118	28	34	5	31	1.80
152453--152540	35	2.5	36	87	3	108	28	35	4	31	1.77
152946--152992	22	2.1	22	84	7	60	76	2	21	0	0.89
152954--152995	11	3.6	11	84	12	57	78	0	21	0	0.75
155601--155639	13	2.9	13	82	17	53	76	0	23	0	0.78
161442--161513	17	4.2	16	72	12	54	38	12	11	37	1.79
169659--169694	15	2.4	15	95	0	63	52	0	25	22	1.47
169855--169940	13	7.2	12	72	22	58	29	3	37	30	1.74
169837--169941	36	2.9	36	95	1	185	28	4	36	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173946--173988	19	2.2	20	84	15	56	0	13	6	79	0.93
173949--173990	21	2.0	22	90	4	68	0	14	7	78	0.95
174364--174466	36	2.9	36	92	1	163	30	4	33	31	1.79
174549--175677	560	2.0	560	97	0	2141	30	17	23	29	1.96
177980--178028	16	2.9	16	84	6	53	16	22	0	61	1.34
181021--181063	20	2.2	20	87	4	61	34	9	6	48	1.62
182610--182661	24	2.2	24	90	6	81	59	13	17	9	1.60
182619--182667	24	2.1	23	88	3	71	63	12	16	8	1.51
182651--182693	5	9.0	5	85	10	63	79	0	20	0	0.74
182651--182693	9	4.5	10	91	5	63	79	0	20	0	0.74
185215--185247	14	2.4	14	94	0	57	42	12	27	18	1.85
189075--189164	2	45.0	2	100	0	180	50	0	0	50	1.00
190762--190807	24	1.9	24	90	0	74	73	2	17	6	1.14
203825--203860	2	18.5	2	94	5	65	50	0	0	50	1.00
205468--205539	34	2.2	31	85	11	92	72	4	18	5	1.21
208660--208713	24	2.3	23	84	6	72	18	7	9	64	1.45
209940--209981	11	3.8	11	81	6	50	69	4	11	14	1.34
214262--214326	20	3.2	20	82	10	87	0	4	13	81	0.84
214262--214327	21	3.2	21	81	12	91	0	4	13	81	0.83
214269--214337	10	6.7	10	85	9	86	0	2	11	85	0.70
214279--214338	31	1.9	32	93	3	104	0	3	13	83	0.77
214668--214709	11	3.8	11	81	6	50	69	4	11	14	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215961--216016	28	2.0	28	96	0	103	44	12	17	25	1.84
216287--216342	27	2.1	27	82	0	67	19	16	30	33	1.94
218694--218738	11	4.1	11	82	5	56	71	4	11	13	1.29
218694--218735	22	1.9	22	90	9	68	69	4	11	14	1.34
231202--231234	17	1.9	17	93	0	57	45	6	9	39	1.61

Tables:   1

The End!