genome.fa.s2906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002906.1 Hibiscus syriacus cultivar Beakdansim tig00006005_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35611

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3781--3827	23	2.0	23	83	0	58	63	2	2	31	1.18
4081--4295	41	5.2	42	78	8	226	32	20	17	30	1.95
4098--4300	82	2.4	83	88	2	291	32	19	17	30	1.95
5851--5920	34	2.1	34	83	0	86	18	11	10	60	1.58
11091--11161	21	3.4	21	65	20	58	32	11	12	43	1.78
11332--11400	23	3.3	23	61	23	60	31	14	14	39	1.86
11492--11560	23	3.3	23	62	29	62	31	13	14	40	1.84
11091--11647	40	13.9	40	93	1	911	30	16	11	41	1.83
11685--11770	28	3.0	28	91	1	136	30	10	15	44	1.80
11771--11946	36	4.8	37	68	8	110	27	21	14	36	1.92
11772--12018	73	3.4	73	87	3	311	27	20	13	38	1.91
11808--11945	37	3.8	35	69	6	96	28	19	13	37	1.90
12401--12680	105	2.6	105	86	5	357	41	16	18	23	1.90
12514--12928	117	3.6	118	83	6	468	40	14	20	24	1.90
12839--13010	91	1.9	87	87	4	245	41	14	18	25	1.89
16712--16788	37	2.1	37	100	0	154	41	5	7	45	1.55
31651--31709	24	2.4	24	91	5	91	20	13	32	33	1.91
32569--32670	42	2.5	41	80	3	123	31	22	22	23	1.98
32769--32884	20	5.7	20	64	13	56	30	24	23	22	1.99
32779--32884	42	2.6	41	83	3	140	31	23	22	22	1.99
32396--33257	214	4.0	214	94	1	1422	33	19	15	32	1.92
32987--33098	42	2.7	41	79	4	125	31	23	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33243--33327	36	2.3	37	86	6	120	23	17	23	35	1.95
34063--34366	126	2.4	125	86	3	423	24	27	15	32	1.96

Tables:   1

The End!