genome.fa.s2907.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002907.1 Hibiscus syriacus cultivar Beakdansim tig00006007_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93715

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8464--8500	19	1.9	19	94	0	65	51	16	16	16	1.77
8884--8928	18	2.5	18	88	0	72	33	13	31	22	1.92
10567--10624	25	2.1	27	78	15	66	50	6	1	41	1.39
11186--11220	14	2.5	14	90	9	54	28	0	0	71	0.86
12248--12283	19	1.9	18	88	5	54	33	25	19	22	1.97
12340--12589	42	6.0	42	88	5	341	20	19	23	37	1.94
12396--12600	21	9.7	21	74	16	158	20	20	23	36	1.95
13438--13616	21	8.7	21	75	8	172	34	24	20	20	1.97
13438--13625	61	3.1	61	83	6	204	34	23	20	21	1.97
13438--13633	103	1.9	101	94	2	347	35	23	20	20	1.96
13629--13678	21	2.4	21	96	0	91	18	20	32	30	1.96
13884--13923	15	2.7	15	88	0	53	42	2	0	55	1.13
13911--14017	29	3.8	28	72	11	92	50	6	2	40	1.43
14382--14408	6	4.5	6	100	0	54	14	0	33	51	1.43
15869--15908	15	2.7	15	88	0	53	42	2	0	55	1.13
30026--30110	37	2.3	36	83	15	104	45	3	3	47	1.37
40609--40771	65	2.5	65	83	3	213	26	15	26	30	1.96
40988--41027	20	2.0	21	85	14	57	47	5	5	42	1.47
47226--47265	21	1.9	21	85	10	55	35	10	2	52	1.48
49215--49377	65	2.5	65	84	3	222	26	15	26	30	1.96
49594--49633	20	2.0	21	85	14	57	47	5	5	42	1.47
58380--58574	78	2.6	76	80	7	209	41	4	11	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58425--58685	36	7.2	36	74	14	216	44	4	7	43	1.53
58576--58705	28	4.4	28	68	20	86	47	5	3	43	1.44
58558--58685	66	2.0	66	83	4	163	46	4	4	43	1.45
58556--58846	159	1.8	157	81	11	360	46	4	4	43	1.46
58724--58792	30	2.3	31	82	10	88	46	7	4	42	1.51
60123--60158	19	1.9	18	88	5	54	13	5	2	77	1.05
60139--60182	13	3.4	13	87	6	63	15	4	4	75	1.14
60138--60199	26	2.3	26	81	15	74	17	3	3	75	1.07
65354--66268	84	11.1	81	79	6	811	29	25	20	24	1.99
65379--66303	248	3.7	246	88	3	1198	29	25	20	24	1.99
65354--66300	165	5.7	163	81	4	963	29	25	20	24	1.99
66985--67222	34	6.7	36	73	16	185	43	4	7	44	1.50
67113--67242	28	4.4	28	68	20	86	47	5	3	43	1.44
67119--67289	91	1.8	92	86	8	247	46	5	4	43	1.46
67095--67233	66	2.1	66	81	5	167	47	4	4	43	1.42
67095--67383	159	1.8	157	80	12	351	46	4	4	43	1.45
68658--68693	19	1.9	18	88	5	54	13	5	2	77	1.05
68674--68717	13	3.4	13	87	6	63	15	4	4	75	1.14
68673--68734	26	2.3	26	81	15	74	17	3	3	75	1.07
70965--70998	16	2.1	16	94	0	59	79	0	0	20	0.73
75769--75841	37	2.0	37	86	5	103	46	2	6	43	1.44
75870--76160	36	7.8	36	83	8	350	43	3	6	45	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75870--76160	75	3.9	73	87	5	361	43	3	6	45	1.48
77520--77558	17	2.2	17	86	9	51	20	2	0	76	0.90
77543--77600	24	2.4	24	80	13	73	8	12	0	79	0.94
77556--77606	24	2.1	24	89	7	77	1	15	0	82	0.76
77556--77599	8	5.4	8	86	2	61	2	15	0	81	0.78
83183--83224	20	2.1	20	90	0	66	16	4	26	52	1.63
83234--83333	46	2.2	45	89	1	146	38	8	24	30	1.84
83904--83951	22	2.1	23	88	3	71	20	29	14	35	1.93
84329--84558	87	2.7	89	85	8	298	30	18	20	30	1.96
85307--86483	421	2.8	421	87	2	1569	33	24	18	24	1.96
85307--86469	169	6.9	169	87	3	1427	33	24	18	23	1.96
87189--87455	39	7.0	37	80	11	274	44	3	6	45	1.47
87205--87455	75	3.3	75	89	3	351	43	3	6	46	1.47
87447--87471	6	4.2	6	100	0	50	16	0	0	84	0.63
88321--88346	2	13.0	2	100	0	52	50	0	50	0	1.00
88738--88813	17	4.6	16	82	11	91	14	3	1	80	0.92
88738--88830	32	2.9	30	80	16	100	15	5	1	78	0.98
88741--88838	17	5.7	17	72	18	62	13	6	1	79	0.96
88764--88839	26	2.8	26	82	11	75	14	5	0	80	0.88
90465--90500	13	2.6	14	86	8	56	83	0	0	16	0.65
91655--91749	24	4.0	24	95	0	163	27	23	27	22	1.99
91700--91783	41	2.0	41	88	4	125	28	23	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91724--91766	17	2.5	17	92	7	70	25	23	27	23	2.00
91686--91807	65	1.9	65	82	0	154	28	21	23	26	1.99
91769--91830	23	2.6	24	87	2	90	29	17	16	37	1.92
93153--93191	13	3.0	13	85	11	53	7	0	43	48	1.31
93259--93298	7	5.7	7	81	0	53	20	0	40	40	1.52
93132--93346	109	2.0	107	84	8	285	26	7	21	44	1.79

Tables:   1

The End!