Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002908.1 Hibiscus syriacus cultivar Beakdansim tig00006008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54097

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5634--5694
30
2.0
30
96
0
113
26
26
16
31
1.96
7121--7182
26
2.4
26
86
0
79
35
8
16
40
1.78
16512--16584
15
5.1
15
73
15
73
43
2
1
52
1.24
16497--16585
42
2.1
42
95
0
160
42
3
3
50
1.35
17919--17976
21
2.8
21
78
5
64
20
36
29
13
1.91
18729--18765
20
1.9
19
89
10
58
45
10
24
18
1.81
22721--22779
21
2.8
21
84
0
82
10
28
40
20
1.85
23662--23697
7
5.1
7
100
0
72
27
0
13
58
1.36
24530--24572
19
2.3
19
87
0
68
32
6
2
58
1.38
26753--26862
54
2.0
54
98
0
211
35
15
13
35
1.87
27614--27650
13
2.8
13
91
0
56
81
8
0
10
0.89
27627--27672
13
3.7
13
77
8
51
71
10
6
10
1.30
27667--27707
20
2.0
20
90
9
66
75
12
0
12
1.05
27683--27742
26
2.4
24
80
8
66
71
13
1
13
1.22
27668--27716
20
2.6
19
84
12
57
73
12
0
14
1.10
27925--28014
16
5.8
15
71
9
65
70
6
5
17
1.30
28323--28826
103
5.0
103
84
8
577
35
3
26
35
1.73
28324--28826
206
2.5
201
84
9
638
35
3
26
35
1.73
29381--29450
14
4.8
14
75
16
70
38
2
10
48
1.51
29389--29460
32
2.3
31
88
4
101
38
2
9
48
1.51
29395--29460
18
3.8
18
76
19
68
37
3
9
50
1.50
31574--31756
7
27.6
7
68
18
81
42
1
9
46
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31540--31916
11
35.4
11
67
21
112
42
1
8
47
1.43
31784--31908
60
2.1
60
84
3
162
41
2
7
48
1.43
31607--31902
51
5.8
50
66
19
125
43
1
7
47
1.40
31607--31906
2
144.0
2
65
18
105
44
1
7
47
1.40
32134--32255
65
1.9
65
81
6
149
31
19
18
31
1.96
32408--32455
13
3.5
13
80
5
51
64
0
4
31
1.12
32661--32702
17
2.5
17
100
0
84
38
11
11
38
1.79
34074--34204
27
4.4
27
76
15
136
14
8
33
43
1.76
34068--34200
59
2.1
61
86
8
180
14
9
33
42
1.77
34068--34200
32
4.3
32
82
10
177
14
9
33
42
1.77
35003--35028
2
13.0
2
100
0
52
50
0
0
50
1.00
37637--37670
17
1.9
18
88
5
52
26
26
26
20
1.99
44548--44632
38
2.2
38
89
0
125
27
23
25
23
2.00
46612--46643
3
10.7
3
100
0
64
65
0
0
34
0.93
48009--48033
12
2.1
12
100
0
50
44
16
16
24
1.86
50787--50883
38
2.6
36
81
3
131
28
23
24
22
1.99
52582--52662
22
3.7
22
68
21
62
29
22
22
25
1.99
52586--52671
43
2.0
43
93
0
145
29
22
23
25
1.99

Tables:   1

The End!