genome.fa.s291.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000291.1 Hibiscus syriacus cultivar Beakdansim tig00000535_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159095

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12350--12383	16	2.1	16	94	0	59	32	26	8	32	1.87
13788--13847	31	2.0	31	83	6	79	35	5	8	51	1.54
13812--14219	198	2.1	197	87	0	600	37	5	8	48	1.57
14263--14303	21	2.0	21	85	0	55	46	2	4	46	1.37
14299--14363	29	2.3	28	82	10	71	60	6	0	33	1.22
17867--17909	20	2.2	20	86	0	59	37	23	9	30	1.86
26732--26777	18	2.7	18	78	18	53	34	8	32	23	1.86
28281--28323	20	2.2	20	86	0	59	32	23	13	30	1.93
28827--28851	11	2.3	11	100	0	50	16	0	0	84	0.63
29196--30037	416	2.0	415	86	4	1158	44	8	9	38	1.66
29835--30292	183	2.5	180	79	8	439	38	11	9	41	1.73
30299--30328	15	1.9	16	93	6	53	40	6	6	46	1.56
32231--32289	29	2.0	30	90	3	93	38	10	18	32	1.84
32465--32503	20	2.0	20	94	0	69	38	30	17	12	1.88
32465--32503	9	4.1	9	81	12	51	38	30	17	12	1.88
32510--32613	29	3.6	29	92	0	154	16	28	31	23	1.96
33046--33134	41	2.2	41	78	8	92	42	1	10	46	1.45
33074--33205	45	3.0	45	80	14	134	40	0	12	47	1.41
33366--33412	16	3.0	16	84	9	53	29	0	10	59	1.31
33387--33417	15	2.1	14	94	5	53	38	0	6	54	1.26
35563--35595	17	1.9	17	93	0	57	45	12	6	36	1.66
35580--35648	22	3.0	22	73	19	77	47	7	4	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35820--35859	21	1.9	21	100	0	80	40	30	10	20	1.85
37564--37622	26	2.3	24	78	16	64	40	3	8	47	1.51
38433--38495	28	2.2	30	91	5	103	57	11	0	31	1.34
38437--38502	28	2.4	28	85	10	98	56	10	0	33	1.34
38472--38520	21	2.3	21	85	3	71	53	16	0	30	1.43
38889--38960	21	3.3	21	66	21	58	30	26	26	16	1.97
38883--38971	44	2.0	44	97	0	169	31	26	23	17	1.97
39074--39111	20	1.9	20	94	0	67	21	50	13	15	1.78
39100--39137	20	1.9	20	88	0	58	26	50	7	15	1.72
39197--39300	29	3.6	29	94	0	181	17	36	30	15	1.91
41341--41388	21	2.3	21	92	0	78	41	14	18	25	1.88
43456--43487	15	2.1	16	94	5	57	37	6	6	50	1.53
45105--45152	21	2.3	21	96	0	87	41	12	18	27	1.86
47137--47231	41	2.3	41	88	0	145	23	16	23	36	1.94
47219--47332	44	2.7	43	77	11	110	27	15	20	36	1.93
51470--51539	21	3.3	21	75	0	59	40	20	37	2	1.67
51506--51572	21	3.2	21	82	0	62	43	19	34	2	1.66
51515--51574	21	2.9	21	84	0	66	43	20	33	3	1.68
51912--51994	44	1.9	44	87	2	123	31	21	16	30	1.96
51981--52293	43	7.3	43	70	9	188	30	23	18	27	1.98
52103--52287	87	2.1	86	86	4	248	30	24	20	24	1.98
65024--65158	71	1.9	70	85	8	184	31	17	11	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65018--65636	70	8.8	70	71	15	291	31	17	10	40	1.83
65258--65548	36	8.1	36	71	13	161	30	17	10	40	1.84
65369--65428	19	3.3	19	70	21	56	25	18	11	45	1.83
80397--80446	14	3.5	14	91	2	73	32	8	16	44	1.76
81888--81913	13	2.0	13	100	0	52	30	15	30	23	1.95
86020--86439	149	2.8	149	82	5	447	35	17	11	36	1.86
87104--87189	26	3.3	26	78	0	82	33	6	18	40	1.78
88680--88753	37	2.0	36	86	2	103	45	4	1	48	1.29
90535--90564	15	2.0	15	100	0	60	20	26	33	20	1.97
94959--95009	16	3.2	16	85	0	66	33	11	25	29	1.91
96230--96290	21	3.2	21	65	29	64	42	21	4	31	1.74
96191--96296	35	3.0	35	94	4	178	46	18	5	29	1.72
100811--100912	35	2.9	35	94	2	168	46	15	5	32	1.70
104058--104093	16	2.2	17	90	5	56	33	11	11	44	1.75
105243--105287	16	2.8	16	89	0	72	24	17	22	35	1.95
110187--110236	17	2.9	17	78	0	55	36	12	18	34	1.87
112342--112380	20	2.0	20	84	0	51	69	12	0	17	1.19
113283--113320	17	2.2	18	90	4	60	2	28	5	63	1.30
113756--113789	15	2.3	15	90	5	52	38	0	2	58	1.13
113788--113852	3	21.7	3	93	0	112	66	0	1	32	1.01
113989--114857	115	7.6	115	93	3	1251	30	20	12	36	1.90
113989--114857	343	2.5	343	89	4	1297	30	20	12	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115493--115876	83	4.6	83	94	1	689	36	22	15	25	1.93
124259--124291	15	2.1	16	88	5	50	51	3	0	45	1.16
129342--129378	17	2.2	17	90	0	56	0	29	8	62	1.24
129812--129845	15	2.3	15	90	5	52	38	0	2	58	1.13
129844--129899	3	18.7	3	100	0	112	66	0	0	33	0.92
133901--133927	2	13.5	2	100	0	54	51	0	0	48	1.00
137818--137865	23	2.1	23	84	7	62	41	2	12	43	1.54
138194--138236	23	2.0	23	86	9	63	62	0	2	34	1.08
140578--140632	18	3.2	18	71	23	64	32	27	14	25	1.95
141243--141315	7	10.0	7	80	16	78	2	17	0	79	0.85
141244--141301	16	3.9	15	84	13	75	3	15	0	81	0.83
141270--141317	6	7.2	6	80	19	51	0	20	0	79	0.74
141242--141315	29	2.5	30	80	12	91	2	18	0	78	0.87
141246--141318	24	2.9	24	79	18	69	2	19	0	78	0.88
145002--145078	38	2.1	37	80	9	86	46	1	3	48	1.28
145217--145260	20	2.3	19	88	11	72	18	25	9	47	1.77
145223--145260	20	1.9	20	100	0	76	18	23	10	47	1.79
149208--149688	55	8.7	55	89	3	619	28	24	18	28	1.98
149699--149811	37	3.1	36	84	7	138	23	19	20	37	1.95
150032--150066	17	2.1	17	89	10	54	28	25	2	42	1.69
151099--151164	24	2.7	25	79	6	73	6	18	1	74	1.10
151153--151268	8	13.2	8	77	15	72	6	15	0	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151124--151267	43	3.5	43	72	19	119	5	17	0	76	1.02
151170--151216	19	2.5	19	76	13	60	10	14	0	74	1.07

Tables:   1

The End!