Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002910.1 Hibiscus syriacus cultivar Beakdansim tig00006017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61078

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1281--1330
19
2.7
19
84
3
66
48
12
14
26
1.78
1586--1663
25
3.2
25
63
23
65
44
11
14
29
1.80
1567--1678
49
2.3
49
96
0
206
41
11
14
33
1.82
1568--1644
24
3.2
24
63
23
61
41
7
15
35
1.76
4876--4922
23
2.0
23
88
8
69
21
31
8
38
1.83
9353--9410
17
3.4
17
85
2
80
20
44
22
12
1.84
9391--9416
13
2.0
13
100
0
52
15
46
23
15
1.83
9508--9563
29
1.9
29
88
0
85
32
7
25
35
1.83
9424--9583
28
5.7
29
76
2
139
27
6
26
40
1.80
9457--9569
56
2.0
56
85
3
154
30
6
26
36
1.81
11272--11312
16
2.4
17
84
12
57
46
12
0
41
1.41
12067--12095
12
2.3
13
94
5
51
37
0
3
58
1.15
12674--12716
18
2.4
18
92
0
68
20
6
0
72
1.08
12815--12882
21
3.5
21
67
19
65
16
4
2
76
1.07
12816--12882
16
3.9
16
71
19
55
16
4
2
76
1.08
12868--12976
40
3.0
34
71
22
96
22
7
0
69
1.18
20137--20344
86
2.4
86
91
1
328
32
24
22
21
1.98
20411--21191
200
3.9
199
84
2
942
33
19
19
26
1.96
22178--22264
22
4.0
21
69
15
52
16
6
0
77
0.98
22208--22259
17
3.1
16
81
10
59
19
1
0
78
0.84
22211--22258
25
1.9
25
87
8
71
20
2
0
77
0.88
22182--22259
8
9.2
8
71
15
59
17
5
0
76
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22220--22266
15
3.1
15
77
14
51
19
4
0
76
0.95
28760--28799
21
1.9
21
94
0
71
25
0
0
75
0.81
28760--28802
11
4.1
11
82
5
54
27
0
0
72
0.85
38506--38550
3
14.7
3
90
4
63
35
0
2
62
1.08
40772--40859
46
1.9
46
88
4
133
39
13
19
27
1.89
42546--42586
7
6.0
7
81
13
50
14
14
12
58
1.63
42550--42593
13
3.2
13
87
6
52
13
11
11
63
1.52
42646--42715
35
2.0
34
86
2
95
18
12
8
60
1.58
45090--45223
72
1.9
72
88
1
207
29
19
17
34
1.94
47512--47679
75
2.2
75
84
2
212
33
15
19
30
1.93
48553--48754
54
3.7
54
85
1
271
37
12
21
28
1.90
48551--48754
108
1.9
108
89
4
322
37
13
21
27
1.90
48698--49110
211
1.9
214
85
1
562
32
14
20
32
1.93
50088--50676
45
13.1
45
94
0
1000
22
22
21
33
1.97
50832--50876
3
14.7
3
86
4
54
37
0
2
60
1.09
51389--51446
25
2.4
24
75
8
64
50
0
5
44
1.24
51615--51692
27
3.0
26
80
12
88
60
0
0
39
0.97
51680--51749
9
7.4
9
75
21
56
62
4
0
32
1.14
51680--51750
20
3.7
20
75
20
71
61
5
0
32
1.19
53127--53190
26
2.3
28
89
7
96
53
3
0
43
1.16
53125--53193
29
2.4
30
83
16
92
53
2
0
43
1.15
53426--53481
17
3.2
17
69
18
51
19
19
8
51
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53556--54096
113
4.8
112
91
2
881
26
20
16
36
1.94
53676--53720
22
2.0
22
83
12
56
15
28
6
48
1.70
53556--54096
222
2.4
225
94
1
946
26
20
16
36
1.94
54452--54505
22
2.5
22
90
0
81
35
16
12
35
1.87
58518--58652
72
1.9
72
92
0
225
37
20
18
24
1.94

Tables:   1

The End!