genome.fa.s2911.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002911.1 Hibiscus syriacus cultivar Beakdansim tig00006018_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121235

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4959--5156	96	2.0	98	93	1	337	32	14	14	39	1.85
7653--7692	17	2.4	17	91	0	62	27	20	2	50	1.61
7661--7699	17	2.3	17	100	0	78	23	23	0	53	1.46
12565--12593	2	15.0	2	92	7	51	48	0	0	51	1.00
18715--18794	23	3.5	23	96	0	151	36	12	28	22	1.91
19900--19964	24	2.7	24	83	9	80	13	9	16	60	1.59
29650--29782	3	44.7	3	89	1	187	33	1	0	64	1.03
42583--42621	10	3.8	10	86	6	60	82	0	15	2	0.79
42580--42624	14	2.9	15	83	12	56	82	0	15	2	0.77
43575--43677	52	2.0	52	96	0	188	24	15	22	37	1.93
43718--43821	52	2.0	52	90	3	165	23	15	24	37	1.93
43583--43956	135	2.8	135	96	1	671	25	14	22	36	1.93
43718--44077	187	1.9	187	95	1	650	25	14	23	37	1.93
43853--44008	52	3.0	52	96	1	287	22	16	25	36	1.94
44633--45307	114	5.9	114	89	5	1018	37	12	20	29	1.90
44641--45307	233	2.9	233	95	1	1195	37	12	20	29	1.89
45555--45684	3	43.7	3	89	1	190	33	1	0	65	1.02
47961--47985	8	3.1	8	100	0	50	24	0	24	52	1.48
49296--49326	16	1.9	16	93	0	53	64	0	3	32	1.09
49540--49619	2	42.0	2	79	18	82	48	0	2	48	1.14
52297--52604	154	2.0	154	98	0	589	32	19	12	35	1.89
54617--54651	17	2.0	18	88	5	54	28	5	28	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54730--54865	31	4.3	32	77	5	100	30	19	16	33	1.94
55402--55446	18	2.6	17	80	10	56	46	24	4	24	1.71
61613--61656	23	2.0	23	86	4	63	65	6	2	25	1.28
61717--61765	21	2.3	21	82	10	55	57	4	2	36	1.30
67092--67133	6	6.7	6	91	8	66	16	2	0	80	0.81
69362--69414	21	2.5	21	90	0	79	22	26	16	33	1.96
69383--69478	41	2.3	41	81	0	120	31	20	19	28	1.97
69404--69477	20	3.7	20	80	3	94	35	20	21	22	1.96
73123--73171	20	2.5	20	89	0	71	18	18	26	36	1.94
73139--73193	20	2.8	20	91	0	83	10	16	23	49	1.77
73158--73201	20	2.2	20	87	0	61	13	13	20	52	1.74
75070--75200	34	3.4	38	80	13	144	40	19	20	19	1.92
75070--75200	20	6.8	20	83	11	175	40	19	20	19	1.92
75261--75376	20	6.2	20	76	11	111	18	19	19	42	1.90
77466--77561	33	2.8	33	87	3	129	43	19	21	14	1.87
77570--77661	19	4.8	19	98	0	175	17	20	15	46	1.84
77554--77634	38	2.1	38	83	0	99	22	23	14	39	1.91
77668--77759	20	4.6	20	91	2	150	18	21	25	34	1.96
80164--80217	24	2.2	24	93	0	90	40	20	18	20	1.91
81079--81225	20	7.3	20	86	3	206	21	19	20	38	1.94
81222--81267	21	2.2	21	88	0	65	36	17	28	17	1.92
83106--83154	21	2.3	21	89	6	73	22	36	18	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83560--83624	34	1.9	34	87	0	94	36	12	24	26	1.91
86290--86346	21	3.0	18	83	14	78	29	12	8	49	1.70
103460--103496	17	2.3	16	90	9	58	18	0	27	54	1.44
105717--105757	20	2.0	21	90	4	66	46	0	4	48	1.23
115819--115914	35	2.7	35	86	0	129	41	29	1	28	1.63
116859--116939	35	2.3	36	87	6	112	30	2	23	43	1.67

Tables:   1

The End!